genome.fa.s5257.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005257.1 Hibiscus syriacus cultivar Beakdansim tig00011894_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82813

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3482--3525	21	2.2	20	83	4	52	20	15	9	54	1.68
6341--6389	16	3.0	15	78	18	53	77	0	20	2	0.87
6352--6388	16	2.4	16	91	8	60	78	0	18	2	0.87
6845--6905	32	1.9	32	93	0	104	42	18	18	21	1.89
9383--9552	74	2.3	75	84	3	209	31	15	22	30	1.95
10423--10585	55	3.0	52	79	10	184	37	15	19	27	1.92
10951--11008	22	2.7	22	81	2	73	39	18	10	31	1.85
11743--11889	45	3.3	45	94	0	258	23	22	21	32	1.98
11907--12777	45	19.3	45	90	1	1215	24	22	18	34	1.96
11941--12194	25	11.2	24	59	19	71	23	22	18	35	1.96
15748--15781	17	1.9	18	88	5	52	0	23	2	73	0.97
25637--25697	17	3.3	18	71	24	56	14	13	6	65	1.45
27738--27763	13	2.0	13	100	0	52	76	0	0	23	0.78
46071--46095	12	2.1	12	100	0	50	36	40	16	8	1.77
46695--46772	40	2.0	40	94	5	140	30	23	29	16	1.96
54182--54258	22	3.7	21	76	8	77	0	9	14	76	1.01
54182--54247	31	2.1	30	83	10	80	0	10	13	75	1.04
54189--54238	12	4.3	12	78	19	52	0	12	12	76	1.04
57933--58287	174	2.0	174	94	2	624	33	16	16	33	1.92
58253--58380	34	3.8	34	91	0	202	32	19	18	29	1.96
58475--58552	37	2.1	37	87	0	111	37	19	16	26	1.93
58396--58629	116	2.0	116	89	3	355	32	23	19	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58634--59071	134	3.3	134	92	0	696	31	21	18	27	1.97
63823--63883	2	30.5	2	100	0	122	0	0	49	50	1.00
78939--78974	12	2.8	12	91	8	54	19	19	0	61	1.35
78939--79000	13	4.9	13	80	7	56	19	17	3	59	1.51
79033--79098	19	3.5	19	87	4	89	31	15	6	46	1.70
79033--79119	19	4.6	19	86	2	86	33	17	6	42	1.76
81623--81684	27	2.3	27	97	0	115	32	16	4	46	1.68
82238--82273	2	19.0	2	88	11	58	50	0	0	50	1.00

Tables:   1

The End!