genome.fa.s5258.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005258.1 Hibiscus syriacus cultivar Beakdansim tig00011895_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  123650

Tables:   1   

This is table  1  of  1  ( 71 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19311--19337	10	2.7	10	100	0	54	29	0	18	51	1.46
22693--22734	6	7.0	6	100	0	84	16	0	50	33	1.46
25214--25374	87	1.8	88	84	6	220	27	14	22	34	1.94
29747--29815	10	7.1	10	76	12	72	18	23	30	27	1.98
29747--29817	19	3.7	19	88	5	90	18	25	29	26	1.98
29824--29860	7	5.4	7	90	6	58	18	29	27	24	1.98
29824--29860	13	2.7	14	87	8	58	18	29	27	24	1.98
37015--37064	9	5.3	9	79	9	55	16	28	32	24	1.96
37014--37064	19	2.7	19	96	0	93	17	27	31	23	1.97
37014--37057	9	4.6	10	80	11	56	18	27	31	22	1.97
37071--37107	7	5.4	7	90	6	58	18	29	27	24	1.98
37071--37107	13	2.7	14	87	8	58	18	29	27	24	1.98
41550--41645	48	2.0	48	93	0	165	41	9	16	32	1.80
41868--41937	27	2.6	27	97	0	131	41	11	5	41	1.65
42541--42583	17	2.6	16	85	3	50	51	16	6	25	1.69
44073--44117	21	2.1	21	100	0	90	40	11	17	31	1.85
48608--48641	14	2.4	14	100	0	68	29	8	20	41	1.82
51129--51158	13	2.3	13	94	0	51	33	16	26	23	1.96
53234--53282	18	2.6	19	84	12	57	73	0	22	4	1.00
54682--54916	124	1.9	125	85	6	334	34	17	24	22	1.96
56671--58614	51	37.3	51	84	5	2190	31	18	26	23	1.98
56671--58603	156	12.4	156	84	6	2174	31	18	26	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56669--58614	210	9.3	208	89	4	2374	31	18	26	23	1.97
58597--58857	55	4.8	54	89	4	373	31	14	23	30	1.94
64562--64683	40	3.0	40	96	0	226	23	18	26	31	1.97
64788--64905	47	2.6	44	81	7	146	37	8	22	32	1.84
65404--65459	22	2.5	23	91	2	96	21	26	16	35	1.94
69186--69232	19	2.6	18	75	18	60	40	17	2	40	1.61
72427--72480	2	27.0	2	100	0	108	50	0	0	50	1.00
72470--73130	330	2.0	326	98	1	1286	42	4	9	42	1.58
88562--88609	23	2.1	23	88	0	69	35	12	18	33	1.89
89036--89098	23	2.7	23	92	0	99	38	20	4	36	1.74
89503--89589	39	2.2	39	95	0	156	17	13	20	48	1.81
89849--89885	18	2.1	18	89	0	56	51	10	5	32	1.60
90273--90323	25	2.0	25	92	0	84	39	19	7	33	1.81
90591--90663	23	3.2	23	82	0	83	41	19	5	34	1.74
90695--91172	229	2.1	229	93	0	823	39	7	8	45	1.62
92261--92325	25	2.6	25	97	2	123	23	13	7	55	1.64
92310--92341	16	2.0	16	100	0	64	31	6	6	56	1.49
92902--92926	11	2.3	11	100	0	50	48	0	0	52	1.00
98316--98356	18	2.3	18	91	4	66	29	4	2	63	1.28
100036--100075	18	2.2	18	90	0	62	25	32	20	22	1.98
100298--100322	9	2.8	9	100	0	50	12	28	12	48	1.76
100562--100633	23	3.0	24	73	21	69	25	6	2	65	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
106658--106706	16	3.3	15	75	8	55	59	4	0	36	1.17
106657--106706	15	3.2	16	72	8	50	60	4	0	36	1.16
106717--106808	44	2.1	44	81	6	105	56	5	2	35	1.34
107071--107445	20	18.6	20	71	13	164	29	25	13	31	1.93
107069--107393	143	2.3	142	80	4	350	30	25	13	31	1.93
107417--107465	18	2.6	19	83	9	64	30	24	8	36	1.85
108187--108220	12	2.8	12	90	0	50	55	29	0	14	1.40
110660--110695	18	2.0	18	94	0	63	55	25	2	16	1.55
110939--110986	20	2.4	20	82	0	60	50	22	14	12	1.77
112515--112555	21	2.0	21	95	0	73	24	14	41	19	1.89
112576--112622	21	2.2	21	84	0	58	31	10	34	23	1.89
112923--113019	42	2.3	43	77	8	110	37	32	9	20	1.85
112924--113065	21	6.8	21	67	15	87	35	33	10	20	1.87
113036--113085	21	2.4	21	82	0	55	36	30	14	20	1.91
112925--113076	63	2.4	63	78	6	164	35	34	10	19	1.86
113200--113303	42	2.5	42	82	6	113	16	22	33	27	1.95
113235--113298	21	3.0	22	71	17	71	12	25	34	28	1.92
114795--114868	20	3.7	20	79	1	67	51	13	12	22	1.74
114871--114933	20	3.5	19	73	24	64	14	14	22	49	1.79
114882--114915	14	2.4	14	90	0	50	11	17	23	47	1.81
115269--115319	22	2.3	22	89	0	75	17	19	45	17	1.86
115412--115461	26	1.9	26	83	0	64	36	14	18	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116438--116475	14	2.7	15	80	16	53	26	0	5	68	1.11
116456--116494	19	2.0	21	90	10	64	28	0	5	66	1.12
118021--118062	21	2.0	21	86	4	59	42	2	7	47	1.43
118102--118231	53	2.5	52	86	3	179	43	5	15	36	1.70
121578--121603	13	2.0	13	100	0	52	61	0	30	7	1.24

Tables:   1

The End!