genome.fa.s526.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000526.1 Hibiscus syriacus cultivar Beakdansim tig00001008_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100901

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3315--3413	25	4.0	25	89	2	146	20	21	24	34	1.97
3315--3461	25	6.1	24	82	7	140	19	22	23	34	1.97
3326--3466	47	2.9	48	82	10	146	21	21	23	34	1.97
4849--5203	139	2.6	139	83	4	459	43	12	11	32	1.79
4849--5240	138	2.8	137	84	3	473	43	13	12	31	1.80
7507--7536	3	10.0	3	100	0	60	66	0	0	33	0.92
8813--8876	33	1.9	33	87	0	92	42	12	0	45	1.42
9636--9708	27	2.7	26	79	10	67	30	2	5	61	1.32
18680--18719	20	2.0	20	90	0	62	37	0	7	55	1.29
18998--19022	2	12.5	2	100	0	50	48	0	0	52	1.00
19523--19573	26	2.0	25	84	3	66	19	7	5	66	1.38
20204--20249	23	2.0	23	91	0	74	19	17	13	50	1.78
22696--22759	6	10.7	6	79	14	62	81	0	18	0	0.70
22696--22755	7	8.7	7	80	7	61	80	0	20	0	0.72
22696--22757	14	4.4	14	85	2	79	80	0	19	0	0.71
25466--25505	20	2.0	21	85	5	55	40	12	5	42	1.64
28823--28905	21	3.9	21	80	7	87	25	34	24	15	1.95
33688--34312	123	5.1	123	91	0	928	39	16	18	25	1.91
34427--34479	3	17.7	3	84	7	72	32	0	0	67	0.91
37328--37386	29	2.0	29	100	0	118	32	23	16	27	1.96
44689--44736	19	2.5	19	100	0	96	22	20	39	16	1.92
44858--44932	3	25.0	3	80	0	78	56	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44834--44930	18	6.1	16	74	17	71	50	0	1	48	1.07
44854--44932	27	2.8	29	84	11	110	54	0	0	45	0.99
44866--44932	24	2.8	24	88	0	107	55	0	0	44	0.99
44864--44938	24	3.2	23	81	5	87	54	0	0	45	0.99
45078--45728	113	5.7	113	93	3	1052	26	20	15	37	1.92
45087--45728	231	2.8	227	93	3	1063	26	20	15	36	1.93
45078--45728	344	1.9	344	95	0	1169	26	20	15	37	1.92
46364--46863	51	9.8	52	95	1	890	38	23	14	24	1.92
46364--46863	103	4.9	103	95	1	884	38	23	14	24	1.92
47810--47871	12	4.8	13	81	15	65	3	14	0	82	0.80
47806--47872	25	2.7	23	80	17	73	2	14	0	82	0.79
47810--47872	27	2.5	24	87	12	83	3	14	0	82	0.79
47805--47867	19	3.6	17	78	16	58	3	15	0	80	0.83
47806--47869	16	3.9	16	73	10	58	3	14	0	82	0.78
60357--60404	19	2.5	19	100	0	96	22	20	39	16	1.92
60491--60541	19	2.6	21	76	17	56	39	0	1	58	1.09
60526--60600	3	25.0	3	80	0	69	54	0	0	45	0.99
60491--60599	21	5.2	21	72	20	86	47	0	0	51	1.07
60531--60603	24	2.9	25	85	8	103	54	0	0	45	0.99
60522--60600	27	2.8	28	84	7	97	53	0	0	46	1.00
60526--60600	15	5.2	15	80	9	84	54	0	0	45	0.99
61772--61942	60	2.9	59	79	8	170	30	22	2	43	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62101--62250	60	2.5	60	76	6	151	40	8	18	32	1.81
62866--63000	61	2.2	61	86	1	182	31	17	2	48	1.60
63605--63738	60	2.2	60	84	5	173	29	15	19	35	1.93
64377--64525	60	2.5	60	82	4	176	37	5	22	34	1.77
64993--65065	29	2.5	29	79	0	83	47	2	12	36	1.55
68236--68261	2	13.0	2	100	0	52	50	0	0	50	1.00
69790--69867	38	2.1	38	87	4	113	42	16	10	30	1.82
71656--71842	60	3.1	58	78	15	186	34	22	6	36	1.80
71963--72128	60	2.8	60	84	3	201	39	3	23	33	1.72
71969--72148	60	3.0	60	80	8	197	38	3	24	33	1.72
77485--77514	2	15.0	2	100	0	60	50	0	0	50	1.00
83816--83903	44	2.0	44	97	0	167	29	14	28	27	1.95
86065--86129	14	4.8	14	76	23	68	78	6	13	1	1.01
86071--86128	30	2.0	29	83	10	73	79	6	12	1	1.00
86057--86118	12	4.9	12	81	14	63	79	4	14	1	0.98
86048--86129	42	2.0	42	85	4	112	78	4	15	1	0.99
86065--86112	12	3.7	13	88	8	71	79	4	14	2	0.98
86994--87056	24	2.6	25	78	11	69	38	12	3	46	1.58
87194--87277	31	2.6	31	83	3	96	28	13	23	34	1.92
93011--93054	22	2.0	22	100	0	88	18	9	40	31	1.81
96233--96262	15	2.0	15	100	0	60	26	13	26	33	1.93
96555--96621	26	2.5	27	85	2	91	64	0	23	11	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96567--96610	14	3.3	14	75	12	56	72	0	15	11	1.11

Tables:   1

The End!