Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005260.1 Hibiscus syriacus cultivar Beakdansim tig00011898_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70409

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2597--2892
55
5.4
54
87
4
362
29
24
18
28
1.98
2585--2892
110
2.8
108
86
4
402
28
25
17
28
1.98
2586--2892
165
1.9
165
88
2
474
28
25
17
28
1.98
4129--4214
45
1.9
45
80
4
102
16
27
17
38
1.91
4238--4370
11
12.0
11
72
17
89
9
15
0
74
1.10
4238--4370
23
6.0
22
70
19
80
9
15
0
74
1.10
4259--4295
19
1.9
19
88
0
56
13
10
0
75
1.04
4218--4307
30
2.9
29
76
20
92
8
13
1
76
1.06
4213--4428
63
3.4
60
73
23
158
10
14
0
73
1.14
4259--4379
31
3.7
30
75
16
93
9
16
0
73
1.13
4233--4382
76
2.0
75
79
10
162
8
16
0
74
1.09
24640--24747
20
5.1
20
72
18
76
76
0
18
3
0.98
24641--24731
46
2.0
46
85
8
123
78
1
18
2
0.92
24643--24733
28
3.3
27
83
10
87
79
1
17
2
0.90
26975--27161
75
2.5
76
85
2
250
21
22
30
25
1.99
29760--29799
21
1.9
21
89
0
62
10
25
40
25
1.86
33647--33686
21
1.9
21
85
10
55
35
10
2
52
1.48
35606--35808
74
2.7
74
86
2
253
21
24
31
22
1.98
36177--36236
21
2.9
21
100
0
120
35
10
30
25
1.88
37307--37373
16
4.3
16
92
3
111
59
17
10
11
1.60
38416--38471
14
4.3
14
76
17
66
51
23
14
10
1.73
38409--38470
24
2.6
24
89
0
97
53
22
12
11
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39663--39737
2
37.5
2
100
0
150
50
0
0
49
1.00
41352--41396
13
3.5
13
75
0
54
51
0
4
44
1.21
41357--41407
26
2.0
26
88
0
75
56
0
5
37
1.23
48398--48432
12
2.9
12
95
0
61
48
8
5
37
1.58
48370--48407
2
19.0
2
100
0
76
50
0
0
50
1.00
56981--57116
46
3.0
45
86
1
191
31
28
5
34
1.79
58424--58462
10
3.9
10
86
0
60
58
10
12
17
1.61
58425--58462
20
1.9
20
94
0
67
57
10
13
18
1.63
59652--59689
19
2.0
19
94
0
67
52
0
2
44
1.14
59952--60074
31
4.0
31
90
0
183
24
26
13
35
1.93

Tables:   1

The End!