genome.fa.s5262.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005262.1 Hibiscus syriacus cultivar Beakdansim tig00011900_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  133646

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
844--882	20	2.0	20	100	0	78	30	5	12	51	1.62
3885--3922	19	2.0	20	94	5	69	57	15	21	5	1.57
10105--10184	26	3.1	26	96	0	142	38	40	8	12	1.74
10202--10339	69	2.0	69	98	0	267	23	26	21	28	1.99
16342--16399	30	1.9	30	89	3	89	41	0	3	55	1.17
16379--16433	16	3.5	15	78	9	56	41	0	0	58	0.98
17831--17879	2	24.5	2	100	0	98	48	0	0	51	1.00
19022--19059	3	13.0	3	86	5	51	0	34	0	65	0.93
51935--52039	15	7.5	13	69	17	50	76	0	15	8	1.02
53318--53387	37	1.9	36	85	8	97	42	17	18	21	1.89
53404--53810	109	3.8	110	82	8	448	28	17	25	29	1.97
53404--53810	55	7.6	55	84	8	425	28	17	25	29	1.97
60913--60971	30	2.0	30	96	0	109	49	13	15	22	1.79
66904--66948	21	2.1	21	87	0	63	31	28	24	15	1.96
67812--67965	31	5.0	31	93	1	256	22	20	20	37	1.95
70917--70961	21	2.1	21	87	0	63	31	28	24	15	1.96
71825--71975	31	4.9	31	92	1	241	22	19	20	37	1.94
78658--78716	20	2.9	20	82	10	66	44	1	3	50	1.28
83981--84039	29	2.0	29	100	0	118	23	13	13	49	1.78
88645--88703	29	2.0	29	100	0	118	23	13	13	49	1.78
91568--91759	96	2.0	96	94	0	339	28	15	27	29	1.96
100632--100675	21	2.1	21	83	8	54	50	2	0	47	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102340--102372	15	2.3	15	89	5	50	54	0	3	42	1.15
104796--104990	96	2.0	96	95	0	354	30	15	24	28	1.96
107351--107379	15	1.9	15	100	0	58	48	27	6	17	1.72
107504--107892	184	2.1	184	91	2	633	42	3	8	45	1.50
114335--114373	18	2.2	18	85	0	51	61	7	25	5	1.44
132889--132981	43	2.1	44	90	2	143	44	27	7	20	1.78

Tables:   1

The End!