Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005265.1 Hibiscus syriacus cultivar Beakdansim tig00011908_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71980

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
14558--14591
17
2.0
17
94
0
59
44
5
11
38
1.65
15979--16080
34
2.8
37
80
8
120
42
12
14
30
1.83
21271--21348
14
5.5
14
74
17
63
79
8
10
1
0.99
21295--21332
10
3.7
10
83
16
51
78
5
15
0
0.91
21281--21325
24
1.9
23
86
4
63
80
6
13
0
0.91
21274--21332
31
1.9
31
86
6
84
81
6
11
0
0.87
21274--21341
20
3.5
19
74
20
61
80
7
11
0
0.89
21275--21341
19
3.5
20
76
10
59
80
7
11
0
0.90
21961--22037
22
3.5
22
94
0
136
38
27
12
20
1.89
22836--23787
106
9.0
106
92
0
1490
33
25
18
22
1.96
24537--24638
34
2.8
37
83
8
138
41
13
14
30
1.85
24691--24734
21
2.0
22
82
4
54
56
22
18
2
1.52
25127--25164
20
1.9
20
88
0
58
26
7
2
63
1.35
28509--28899
55
7.2
55
84
6
483
33
10
19
35
1.87
28507--28899
110
3.6
110
86
3
535
33
10
19
35
1.87
35585--35798
55
3.9
55
87
3
297
35
11
20
33
1.89
37325--37405
32
2.5
32
82
5
101
17
27
27
28
1.97
37537--37565
14
2.1
14
100
0
58
44
0
6
48
1.29
38192--38231
19
2.2
19
86
13
57
72
2
22
2
1.09
38886--38954
28
2.4
29
82
2
86
43
33
2
20
1.67
40251--40358
57
1.9
57
84
0
144
34
7
16
41
1.76
42026--42127
43
2.4
43
94
0
177
33
17
16
32
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42342--42588
117
2.1
116
86
2
343
33
14
23
27
1.94
42895--42941
3
15.7
3
100
0
94
65
0
0
34
0.93
42940--42970
3
10.3
3
100
0
62
32
0
0
67
0.91
44375--44414
16
2.4
17
84
15
57
37
5
27
30
1.78
47209--47266
23
2.5
23
81
8
64
15
27
12
44
1.82
52350--52387
14
2.7
14
91
0
67
52
0
7
39
1.31
52356--52422
26
2.6
25
85
2
80
44
0
13
41
1.43
52475--52551
8
9.9
8
71
20
56
38
1
7
51
1.39
52475--52527
19
3.1
17
82
17
65
39
0
9
50
1.35
52512--52721
42
5.0
42
84
3
230
43
4
4
47
1.45
52510--52720
14
15.1
14
77
9
207
42
4
4
47
1.45
56204--56240
18
2.1
18
94
0
65
67
5
2
24
1.25
56642--56704
32
2.0
31
90
3
99
44
12
4
38
1.64
57165--57202
20
1.9
20
88
0
58
18
47
7
26
1.76
62779--62857
20
3.8
20
73
6
77
37
16
22
22
1.93
68623--68697
23
3.7
20
74
19
66
36
21
17
25
1.95
71628--71668
20
2.0
20
86
9
57
36
2
12
48
1.54
71847--71980
60
2.2
61
88
4
191
31
16
26
25
1.96

Tables:   1

The End!