genome.fa.s5266.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005266.1 Hibiscus syriacus cultivar Beakdansim tig00011909_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  103611

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5218--5254	2	18.5	2	100	0	74	51	0	0	48	1.00
7667--7695	14	2.1	14	93	6	51	68	3	6	20	1.27
8871--8922	23	2.3	23	82	0	68	26	15	25	32	1.95
10154--10263	31	3.4	31	74	18	107	40	20	20	19	1.92
10186--10298	35	3.4	34	72	18	110	38	23	23	15	1.93
10158--10342	66	2.8	66	86	3	257	38	22	19	20	1.94
17442--17530	33	2.7	33	78	15	94	40	8	5	44	1.59
21061--21109	22	2.2	22	85	7	64	36	22	20	20	1.95
22674--22730	23	2.5	23	94	0	105	54	8	7	29	1.58
24810--24843	18	1.9	17	88	5	50	23	8	17	50	1.74
25769--25837	21	3.4	20	82	9	77	17	31	27	23	1.97
25758--25837	20	4.0	20	79	11	92	17	27	32	22	1.96
29167--29271	21	5.1	20	79	11	97	17	25	38	19	1.93
29211--29251	18	2.2	19	86	4	57	14	26	34	24	1.94
29210--29271	19	3.2	19	77	8	61	16	25	37	20	1.93
30410--30450	20	2.0	20	85	9	55	51	29	0	19	1.47
40273--40392	57	2.1	57	90	0	186	20	22	24	32	1.98
45715--45783	23	3.0	23	93	0	120	28	21	14	34	1.93
47008--47052	17	2.7	18	80	12	53	42	0	4	53	1.21
54712--54741	15	1.9	16	93	6	53	20	23	0	56	1.42
61921--62071	20	7.7	19	79	8	151	33	27	9	30	1.88
61922--62071	39	3.8	40	80	8	148	33	26	9	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61925--62163	20	12.2	19	73	13	83	29	24	11	34	1.91
62756--62824	34	2.0	34	82	0	84	23	11	20	44	1.83
64183--64309	42	3.0	42	87	0	164	26	33	15	24	1.95
64439--64620	63	2.9	62	75	3	202	18	10	34	35	1.86
64409--64620	21	10.1	21	70	8	117	19	9	34	36	1.85
64959--64993	18	1.9	18	100	0	70	22	37	22	17	1.94
64905--65075	21	8.3	21	79	7	127	23	38	13	25	1.91
66612--66738	20	6.3	20	77	3	121	43	21	13	22	1.87
66612--66739	60	2.1	60	84	2	159	42	21	14	21	1.87
71866--72091	103	2.2	103	91	1	373	28	12	21	37	1.90
72099--72159	23	2.7	23	84	0	86	19	24	27	27	1.99
73536--73622	20	4.4	20	81	7	88	49	8	17	25	1.73
73536--73622	40	2.2	40	83	2	104	49	8	17	25	1.73
73536--73716	60	3.0	59	75	10	163	43	10	19	25	1.83
73548--73716	20	8.4	21	75	11	106	42	10	21	26	1.85
73640--73799	20	7.9	19	68	14	72	35	13	20	30	1.92
73689--73816	40	3.2	40	75	8	116	32	12	23	31	1.92
73723--73880	20	8.0	19	73	8	102	27	11	25	35	1.90
73700--73881	60	3.0	59	77	8	152	28	11	24	35	1.90
75814--75859	19	2.7	16	81	18	65	32	17	8	41	1.80
75822--75861	19	2.1	19	100	0	80	30	22	10	37	1.87
78177--78201	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81532--81559	13	2.2	13	100	0	56	35	7	14	42	1.73
84192--84225	2	17.0	2	100	0	68	50	0	0	50	1.00
86678--86706	2	14.5	2	100	0	58	51	0	0	48	1.00
95224--95463	129	1.9	129	84	3	331	33	18	14	33	1.91
96037--96135	44	2.2	45	82	5	121	21	29	22	27	1.99
101258--101304	18	2.7	17	79	20	53	17	31	25	25	1.97
102050--102136	44	2.1	42	85	10	117	31	16	8	44	1.76
102151--102227	39	2.0	39	92	0	127	19	28	23	28	1.98

Tables:   1

The End!