genome.fa.s5267.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005267.1 Hibiscus syriacus cultivar Beakdansim tig00011912_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86259

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
429--831	112	3.6	111	83	5	492	35	15	19	29	1.92
802--1065	120	2.2	118	84	7	333	40	16	18	24	1.91
1216--1271	3	18.0	3	82	14	69	39	0	0	60	0.97
1220--1269	13	4.1	13	76	23	63	40	0	0	60	0.97
6836--6881	11	3.9	12	80	11	51	50	0	0	50	1.00
7154--7190	18	2.1	18	100	0	74	24	5	10	59	1.52
8065--8121	24	2.4	24	85	8	73	38	8	3	49	1.51
8727--8787	29	2.1	30	84	3	79	40	6	18	34	1.76
14951--15009	30	2.0	30	100	0	118	32	23	20	23	1.98
14951--15023	30	2.4	30	90	0	101	30	23	21	24	1.99
20423--20495	30	2.4	30	95	0	128	30	24	20	24	1.99
20481--20545	31	2.1	31	85	0	85	33	23	18	24	1.96
25899--25948	20	2.5	21	81	15	61	34	6	14	46	1.69
26164--26219	16	3.5	16	100	0	112	39	7	5	48	1.54
28560--28591	16	2.0	16	93	0	55	78	0	0	21	0.76
30582--31468	75	11.8	75	86	2	1156	38	10	18	31	1.85
30573--31464	224	4.0	224	86	2	1166	38	10	18	31	1.85
36749--36773	5	5.0	5	100	0	50	80	0	0	20	0.72
38291--38337	24	2.0	24	95	0	85	31	10	19	38	1.86
39617--39657	5	7.8	5	89	8	55	75	0	0	24	0.80
41163--41209	24	2.0	24	95	0	85	31	10	19	38	1.86
44750--44796	24	2.0	24	95	0	85	34	12	17	36	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43914--46159	750	3.0	750	98	0	4262	35	12	20	32	1.89
45500--45546	24	2.0	24	95	0	85	34	12	17	36	1.87
67261--67390	45	2.9	45	89	1	197	24	20	8	46	1.79
67406--67653	80	3.1	80	87	0	352	32	20	11	36	1.88
67793--68315	55	9.5	55	86	1	683	27	19	18	34	1.95
68563--68652	15	6.0	15	94	0	153	50	0	0	50	1.00
68640--68787	22	6.6	21	69	16	100	37	0	10	52	1.40
68593--68747	67	2.3	69	80	11	189	41	0	6	50	1.32
68674--69215	54	10.1	49	70	22	259	33	0	12	53	1.41
68775--68825	26	2.0	25	96	3	93	33	0	7	58	1.27
68822--68938	21	5.1	21	77	17	108	33	0	14	52	1.42
68877--69215	54	6.0	54	76	14	353	33	0	12	53	1.39
68903--69000	32	2.9	34	85	11	107	34	0	9	56	1.31
68920--69198	32	8.5	32	78	13	232	33	0	12	53	1.39
68971--69044	22	3.2	22	67	20	60	27	0	17	55	1.42
68696--69166	166	3.0	162	89	8	710	33	0	12	53	1.39
69060--69102	22	2.0	22	95	0	77	37	0	11	51	1.39
69002--69288	144	2.0	141	84	10	368	32	0	13	53	1.41
68920--69278	198	1.8	198	98	0	700	32	0	13	53	1.40
69028--69278	86	3.0	86	84	9	281	33	0	13	52	1.40
68695--69246	166	3.4	159	82	11	612	33	0	13	53	1.40
69225--69288	32	2.0	32	100	0	128	34	0	12	53	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69483--69603	54	2.2	54	92	0	197	32	21	19	27	1.97
69878--70066	94	2.0	95	85	1	254	26	25	15	32	1.95
73603--73637	15	2.5	13	86	13	52	62	5	0	31	1.18
78640--78680	18	2.3	18	86	0	55	80	0	14	4	0.87
80664--80766	2	53.0	2	90	5	167	49	1	0	48	1.12
81664--81706	14	3.1	14	84	15	54	0	4	30	65	1.13
81708--81748	20	2.0	20	100	0	82	14	4	34	46	1.66
82257--82347	3	32.0	3	84	10	120	65	0	0	34	0.93
82258--82347	17	5.0	17	82	15	110	66	0	0	33	0.92
82257--82347	20	4.6	20	86	5	132	65	0	0	34	0.93
82469--83172	123	5.7	123	88	3	990	25	18	15	39	1.91
84440--84471	2	16.5	2	93	6	57	53	0	0	46	1.00

Tables:   1

The End!