Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005268.1 Hibiscus syriacus cultivar Beakdansim tig00011913_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  47218

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7872--7943
20
3.5
20
73
1
72
23
16
27
31
1.96
7968--8038
20
3.5
20
78
0
70
28
23
19
28
1.99
9097--9176
32
2.5
32
85
0
97
30
12
20
37
1.89
11139--11224
22
3.9
22
98
0
163
27
23
22
26
1.99
13729--13798
21
3.4
19
70
16
50
38
0
7
54
1.28
14332--14396
27
2.4
27
84
7
78
61
7
3
27
1.38
14926--14990
2
32.0
2
81
3
76
46
3
3
47
1.33
15029--15308
37
7.5
37
77
9
237
44
3
7
45
1.47
15061--15271
38
5.6
36
79
11
178
44
2
7
45
1.45
16468--16515
16
2.8
18
73
23
57
12
2
6
79
1.01
16607--16709
30
3.4
28
68
16
73
16
8
3
70
1.27
16596--16648
16
3.2
15
76
21
52
15
5
0
79
0.91
16739--16773
2
17.5
2
100
0
70
48
0
0
51
1.00
18170--18201
14
2.3
14
94
0
55
46
21
0
31
1.52
18211--18241
14
2.2
14
94
0
53
38
38
0
22
1.54
22335--22374
20
1.9
22
85
10
57
75
10
0
15
1.05
22345--22386
22
2.0
21
85
4
57
71
9
0
19
1.13
23610--23647
20
1.9
20
88
0
58
21
26
10
42
1.85
24667--24703
19
1.9
19
94
0
65
24
16
29
29
1.96
25847--25891
19
2.2
22
88
11
69
28
0
6
64
1.19
26960--27039
22
3.6
23
91
3
94
58
1
0
40
1.06
26979--27039
15
4.2
14
72
13
52
63
0
0
36
0.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29325--29370
14
3.0
15
82
17
67
28
0
0
71
0.86
31335--31375
21
2.0
21
85
9
57
48
2
0
48
1.14
32833--32859
14
1.9
14
100
0
54
37
0
3
59
1.15
32833--32873
18
2.3
18
87
4
57
41
0
2
56
1.13
32833--32885
14
3.9
14
79
18
51
41
0
1
56
1.10
34203--34250
19
2.3
21
82
10
55
50
2
2
45
1.25
34439--34469
11
2.8
11
100
0
62
32
9
0
58
1.31
36190--36238
19
2.7
17
84
9
53
26
20
28
24
1.99
36255--36306
19
2.7
19
100
0
104
17
21
34
26
1.95
36210--36372
84
2.0
83
84
8
215
25
19
26
28
1.98
45212--45698
55
8.9
55
89
1
717
30
17
18
33
1.94
46218--46268
20
2.6
19
82
14
59
27
23
17
31
1.97

Tables:   1

The End!