genome.fa.s5269.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005269.1 Hibiscus syriacus cultivar Beakdansim tig00011914_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55851

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1948--1977	9	3.3	9	90	0	51	70	0	0	30	0.88
7620--7654	12	2.9	12	86	0	52	31	2	28	37	1.72
8528--8561	14	2.4	14	100	0	68	58	14	14	11	1.63
8528--8572	14	3.2	14	90	0	54	55	15	15	13	1.69
9542--9577	17	2.1	17	94	0	63	50	13	0	36	1.43
15808--15868	13	4.3	13	77	18	68	16	47	21	14	1.82
15786--15862	18	4.6	18	81	15	110	16	50	20	11	1.76
15790--15868	31	2.5	31	95	0	149	16	48	21	13	1.81
15860--15898	7	5.4	7	93	6	69	12	33	28	25	1.93
15860--15897	15	2.6	15	95	4	69	13	34	26	26	1.93
15857--15898	22	1.9	22	100	0	84	14	33	28	23	1.94
18385--18483	24	4.2	23	73	8	83	23	13	17	46	1.82
20617--20686	18	4.2	18	77	17	87	17	48	20	14	1.81
20621--20701	31	2.5	31	86	4	117	16	44	22	17	1.86
20639--20675	13	2.8	13	87	0	56	16	45	21	16	1.84
20678--20709	7	4.4	7	92	7	55	12	34	28	25	1.92
20675--20708	15	2.3	15	100	0	68	14	35	26	23	1.94
23197--23296	24	4.2	24	74	5	94	23	13	17	47	1.82
25448--25523	13	5.3	13	77	17	71	15	44	22	17	1.86
25426--25502	18	4.6	18	81	15	110	16	50	20	11	1.76
25430--25508	31	2.5	31	95	0	149	16	48	21	13	1.81
25484--25523	8	5.5	8	77	22	52	15	40	25	20	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25430--25524	13	6.4	14	72	23	70	15	45	23	15	1.85
28009--28108	24	4.2	24	74	5	94	23	13	17	47	1.82
47345--47387	20	2.2	20	86	0	59	32	18	13	34	1.90
49807--49856	21	2.4	21	82	0	64	22	14	26	38	1.91
51463--51512	24	2.0	25	84	3	66	40	6	10	44	1.63
51491--51549	30	1.9	31	86	3	84	42	10	6	40	1.65
53480--53518	21	1.9	20	84	5	51	33	23	15	28	1.95
53606--53644	20	2.0	19	95	5	69	25	17	35	20	1.95

Tables:   1

The End!