Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005270.1 Hibiscus syriacus cultivar Beakdansim tig00011915_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 56091
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Found at i:1892 original size:2 final size:2
Alignment explanation
Indices: 1885--1931 Score: 51
Period size: 2 Copynumber: 23.0 Consensus size: 2
1875 CACCTCAGAT
* *
1885 TA TA TA TA TA TA TA TA TA TA TG CA -A TGA GTA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T-A -TA TA TA TA TA TA TA
1928 TA TA
1 TA TA
1932 CATGCAATGA
Statistics
Matches: 39, Mismatches: 3, Indels: 6
0.81 0.06 0.12
Matches are distributed among these distances:
1 1 0.03
2 35 0.90
3 2 0.05
4 1 0.03
ACGTcount: A:0.47, C:0.02, G:0.06, T:0.45
Consensus pattern (2 bp):
TA
Found at i:1923 original size:29 final size:29
Alignment explanation
Indices: 1885--1942 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
1875 CACCTCAGAT
*
1885 TATATATATATATATATATATGCAATGAG
1 TATATATATATATATATACATGCAATGAG
1914 TATATATATATATATATACATGCAATGAG
1 TATATATATATATATATACATGCAATGAG
1943 GGGTATACAC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.45, C:0.05, G:0.10, T:0.40
Consensus pattern (29 bp):
TATATATATATATATATACATGCAATGAG
Found at i:2305 original size:41 final size:43
Alignment explanation
Indices: 2202--2313 Score: 131
Period size: 41 Copynumber: 2.7 Consensus size: 43
2192 GTTTAGCGGC
* * * *
2202 GTTTTCTTCACAAACGCCGCAGTAGATGTTTATTTTACCGGCAT
1 GTTTTCCT-ACAAACGCCGCAGAAGATGTTGATATTACCGGCAT
* *
2246 -TTTTCCTACAAACACCGCAGAAGATGTTGATATTAGC-G-AT
1 GTTTTCCTACAAACGCCGCAGAAGATGTTGATATTACCGGCAT
*
2286 GTTTTCCTACAAACGCCGCAGAATATGT
1 GTTTTCCTACAAACGCCGCAGAAGATGT
2314 CTTGAGATTT
Statistics
Matches: 59, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
40 2 0.03
41 26 0.44
42 25 0.42
43 6 0.10
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (43 bp):
GTTTTCCTACAAACGCCGCAGAAGATGTTGATATTACCGGCAT
Found at i:2754 original size:21 final size:21
Alignment explanation
Indices: 2730--2790 Score: 63
Period size: 21 Copynumber: 3.0 Consensus size: 21
2720 ATATATTACT
2730 TCTCTCTGTTCTGCCGCTGCC
1 TCTCTCTGTTCTGCCGCTGCC
* * *
2751 TCTCTCTGTACTG-CACTGCT
1 TCTCTCTGTTCTGCCGCTGCC
*
2771 TCTCTCT-TTGCTTCCGCTGC
1 TCTCTCTGTT-CTGCCGCTGC
2791 TGCTCTAGCT
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
19 1 0.03
20 14 0.44
21 17 0.53
ACGTcount: A:0.03, C:0.39, G:0.16, T:0.41
Consensus pattern (21 bp):
TCTCTCTGTTCTGCCGCTGCC
Found at i:2824 original size:21 final size:21
Alignment explanation
Indices: 2778--2826 Score: 55
Period size: 21 Copynumber: 2.3 Consensus size: 21
2768 GCTTCTCTCT
* *
2778 TTGCTTCCGCTGCTGCTCTAG
1 TTGCTTCCACTGCTGCTCCAG
*
2799 CTGCTTCCACTGCTGCTTCCA-
1 TTGCTTCCACTGCTGC-TCCAG
2820 TTGCTTC
1 TTGCTTC
2827 ATTTTCCGCT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 20 0.87
22 3 0.13
ACGTcount: A:0.06, C:0.37, G:0.18, T:0.39
Consensus pattern (21 bp):
TTGCTTCCACTGCTGCTCCAG
Found at i:11902 original size:81 final size:81
Alignment explanation
Indices: 11815--12088 Score: 383
Period size: 81 Copynumber: 3.4 Consensus size: 81
11805 GTTAAAATCA
* * * *
11815 ATTGCGGCGTTTACAGAAAAATGCCACTAATGTACGACCCATTTGCGGCGTTTCTTGTAAAACGC
1 ATTGCGGCGTTTATATAAAAACGCCACTAATGTACGACCCATTTGCGGTGTTTCTTGTAAAACGC
11880 CACTATAAACAACTCT
66 CACTATAAACAACTCT
* *
11896 ATTGCGGCATTTATATAAAAAGGCCACTAATGTACGACCCATTTGCGGTGTTTCTTGTAAAACGC
1 ATTGCGGCGTTTATATAAAAACGCCACTAATGTACGACCCATTTGCGGTGTTTCTTGTAAAACGC
11961 CACTATAAACAACTCT
66 CACTATAAACAACTCT
* * * * *
11977 ATTGCGGCGTTTATATAAAAACGCCGCTAAAT-TACTACTC-TATTGCGGTATTT-TTTTAGAAA
1 ATTGCGGCGTTTATATAAAAACGCCACT-AATGTACGACCCAT-TTGCGGTGTTTCTTGT--AAA
12039 ACGCCACTATAAACAACTCT
62 ACGCCACTATAAACAACTCT
*
12059 ATTGCGGCGTTTATATAAAAACGCCGCTAA
1 ATTGCGGCGTTTATATAAAAACGCCACTAA
12089 ATTACCACCC
Statistics
Matches: 177, Mismatches: 12, Indels: 8
0.90 0.06 0.04
Matches are distributed among these distances:
80 4 0.02
81 119 0.67
82 54 0.31
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.30
Consensus pattern (81 bp):
ATTGCGGCGTTTATATAAAAACGCCACTAATGTACGACCCATTTGCGGTGTTTCTTGTAAAACGC
CACTATAAACAACTCT
Found at i:12023 original size:41 final size:41
Alignment explanation
Indices: 11815--12111 Score: 204
Period size: 41 Copynumber: 7.3 Consensus size: 41
11805 GTTAAAATCA
* * * * *
11815 ATTGCGGCGTTTACAGAAAAATGCCACT-AATGTACGAC-CC
1 ATTGCGGCGTTTATATAAAAACGCCACTAAAT-TACAACTCT
* *
11855 ATTTGCGGCGTTTCT-TGTAAAACGCCACTATAA--ACAACTCT
1 A-TTGCGGCGTTTATAT-AAAAACGCCACTA-AATTACAACTCT
* * * *
11896 ATTGCGGCATTTATATAAAAAGGCCACT-AATGTACGAC-CC
1 ATTGCGGCGTTTATATAAAAACGCCACTAAAT-TACAACTCT
* * *
11936 ATTTGCGGTGTTTCT-TGTAAAACGCCACTATAA--ACAACTCT
1 A-TTGCGGCGTTTATAT-AAAAACGCCACTA-AATTACAACTCT
* *
11977 ATTGCGGCGTTTATATAAAAACGCCGCTAAATTACTACTCT
1 ATTGCGGCGTTTATATAAAAACGCCACTAAATTACAACTCT
** * *
12018 ATTGCGGTATTTTTTTAGAAAACGCCACTATAA--ACAACTCT
1 ATTGCGGCGTTTATATA-AAAACGCCACTA-AATTACAACTCT
* * *
12059 ATTGCGGCGTTTATATAAAAACGCCGCTAAATTACCACCCT
1 ATTGCGGCGTTTATATAAAAACGCCACTAAATTACAACTCT
*
12100 ATTACGGCGTTT
1 ATTGCGGCGTTT
12112 GTTGAAAAAA
Statistics
Matches: 197, Mismatches: 39, Indels: 41
0.71 0.14 0.15
Matches are distributed among these distances:
38 2 0.01
39 4 0.02
40 66 0.34
41 108 0.55
42 11 0.06
43 6 0.03
ACGTcount: A:0.31, C:0.23, G:0.16, T:0.30
Consensus pattern (41 bp):
ATTGCGGCGTTTATATAAAAACGCCACTAAATTACAACTCT
Found at i:12065 original size:82 final size:80
Alignment explanation
Indices: 11815--12125 Score: 349
Period size: 81 Copynumber: 3.8 Consensus size: 80
11805 GTTAAAATCA
* * * * * * *
11815 ATTGCGGCGTTTACAGAAAAATGCCACT-AATGTACGACCCATTTGCGGCGTTTCTTGTAAAACG
1 ATTGCGGCGTTTATATAAAAACGCCGCTAAAT-TACCACCTA-TTGCGGTGTTTCTTGTAAAACG
11879 CCACTATAAACAACTCT
64 CCACTATAAACAACTCT
* * * * *
11896 ATTGCGGCATTTATATAAAAAGGCCACT-AATGTACGACCCATTTGCGGTGTTTCTTGTAAAACG
1 ATTGCGGCGTTTATATAAAAACGCCGCTAAAT-TACCACCTA-TTGCGGTGTTTCTTGTAAAACG
11960 CCACTATAAACAACTCT
64 CCACTATAAACAACTCT
* * *
11977 ATTGCGGCGTTTATATAAAAACGCCGCTAAATTACTACTCTATTGCGGTATTT-TTTTAGAAAAC
1 ATTGCGGCGTTTATATAAAAACGCCGCTAAATTACCAC-CTATTGCGGTGTTTCTTGT--AAAAC
12041 GCCACTATAAACAACTCT
63 GCCACTATAAACAACTCT
* * * *
12059 ATTGCGGCGTTTATATAAAAACGCCGCTAAATTACCACCCTATTACGGCGTTTGTTGAAAAAACG
1 ATTGCGGCGTTTATATAAAAACGCCGCTAAATTACCA-CCTATTGCGGTGTTTCTTG-TAAAACG
12124 CC
64 CC
12126 GCTAAAGTTT
Statistics
Matches: 205, Mismatches: 18, Indels: 13
0.87 0.08 0.06
Matches are distributed among these distances:
80 3 0.01
81 116 0.57
82 83 0.40
83 3 0.01
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.29
Consensus pattern (80 bp):
ATTGCGGCGTTTATATAAAAACGCCGCTAAATTACCACCTATTGCGGTGTTTCTTGTAAAACGCC
ACTATAAACAACTCT
Found at i:14869 original size:23 final size:23
Alignment explanation
Indices: 14843--14886 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
14833 AATTAGGCTC
* *
14843 GGGTTGGCTTGTATCTGGGTCTT
1 GGGTTGGCTTGCATATGGGTCTT
14866 GGGTTGGCTTGCATATGGGTC
1 GGGTTGGCTTGCATATGGGTC
14887 GGGTTTTGTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.07, C:0.14, G:0.41, T:0.39
Consensus pattern (23 bp):
GGGTTGGCTTGCATATGGGTCTT
Found at i:16855 original size:24 final size:24
Alignment explanation
Indices: 16823--16878 Score: 112
Period size: 24 Copynumber: 2.3 Consensus size: 24
16813 CTATTCTTTC
16823 GCTTCAATTGAGCTCAAATTTTAG
1 GCTTCAATTGAGCTCAAATTTTAG
16847 GCTTCAATTGAGCTCAAATTTTAG
1 GCTTCAATTGAGCTCAAATTTTAG
16871 GCTTCAAT
1 GCTTCAAT
16879 CGAACTTCTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.29, C:0.18, G:0.16, T:0.38
Consensus pattern (24 bp):
GCTTCAATTGAGCTCAAATTTTAG
Found at i:17135 original size:30 final size:30
Alignment explanation
Indices: 17099--17164 Score: 87
Period size: 30 Copynumber: 2.2 Consensus size: 30
17089 AGTGAACCGG
** *
17099 CGGTTCAAACCGGTTTTGTCGGTTTTCAGC
1 CGGTTCAAACCGGTTTTCCCGATTTTCAGC
**
17129 CGGTTCACCCCGGTTTTCCCGATTTTCAGC
1 CGGTTCAAACCGGTTTTCCCGATTTTCAGC
17159 CGGTTC
1 CGGTTC
17165 TTCCGGTTCT
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.11, C:0.30, G:0.24, T:0.35
Consensus pattern (30 bp):
CGGTTCAAACCGGTTTTCCCGATTTTCAGC
Found at i:17688 original size:39 final size:39
Alignment explanation
Indices: 17622--17696 Score: 107
Period size: 39 Copynumber: 1.9 Consensus size: 39
17612 TTATTCATAA
*
17622 TTCTCAAATTATTTCACTCCAATATTCTAAAATTTTAAT
1 TTCTCAAATTATTTCACTCCAACATTCTAAAATTTTAAT
* *
17661 TTCTCAAATTATTTCAACT-TAACATTCTAAATTTTT
1 TTCTCAAATTATTTC-ACTCCAACATTCTAAAATTTT
17697 TGAGATGGTT
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
39 29 0.91
40 3 0.09
ACGTcount: A:0.35, C:0.17, G:0.00, T:0.48
Consensus pattern (39 bp):
TTCTCAAATTATTTCACTCCAACATTCTAAAATTTTAAT
Found at i:20767 original size:14 final size:13
Alignment explanation
Indices: 20742--20787 Score: 65
Period size: 14 Copynumber: 3.4 Consensus size: 13
20732 TAACTTTTTG
20742 GTCAACGGTCAAA
1 GTCAACGGTCAAA
20755 GTCAACTGGTCAAA
1 GTCAAC-GGTCAAA
*
20769 GTCGACGGATCAAA
1 GTCAACGG-TCAAA
20783 GTCAA
1 GTCAA
20788 TGGGTTGACT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
13 8 0.28
14 21 0.72
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (13 bp):
GTCAACGGTCAAA
Found at i:27102 original size:31 final size:31
Alignment explanation
Indices: 27061--27132 Score: 108
Period size: 31 Copynumber: 2.3 Consensus size: 31
27051 AAAACATAAG
*
27061 ATATGATCACTTTTGTTTTTATTTAATTAAA
1 ATATGATCACTTTCGTTTTTATTTAATTAAA
* *
27092 ATATGGTCACTTTCGTTTTTATTTAATTAAG
1 ATATGATCACTTTCGTTTTTATTTAATTAAA
*
27123 ATGTGATCAC
1 ATATGATCAC
27133 CCCGAGTTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.29, C:0.10, G:0.11, T:0.50
Consensus pattern (31 bp):
ATATGATCACTTTCGTTTTTATTTAATTAAA
Found at i:27949 original size:27 final size:25
Alignment explanation
Indices: 27890--27976 Score: 78
Period size: 25 Copynumber: 3.5 Consensus size: 25
27880 TTTATATATA
*
27890 TTAACTTAAAATATTTT-TATATCAAC
1 TTAA-TTAAAATATTTTAT-TATTAAC
27916 TT-ATTAAACATATTTTATTATTAAC
1 TTAATTAAA-ATATTTTATTATTAAC
27941 TTAATTTAAAAATATTTTATT-TTAA-
1 TTAA-TT-AAAATATTTTATTATTAAC
27966 TT--TTAAAATAT
1 TTAATTAAAATAT
27977 ATAATTTATT
Statistics
Matches: 55, Mismatches: 1, Indels: 15
0.77 0.01 0.21
Matches are distributed among these distances:
21 7 0.13
22 2 0.04
24 5 0.09
25 18 0.33
26 8 0.15
27 12 0.22
28 3 0.05
ACGTcount: A:0.43, C:0.06, G:0.00, T:0.52
Consensus pattern (25 bp):
TTAATTAAAATATTTTATTATTAAC
Found at i:27966 original size:21 final size:23
Alignment explanation
Indices: 27941--27993 Score: 74
Period size: 25 Copynumber: 2.3 Consensus size: 23
27931 TATTATTAAC
27941 TTAATTTAAAA-ATAT-TTTATT
1 TTAATTTAAAATATATATTTATT
27962 TTAATTTTAAAATATATAATTTATT
1 TTAA-TTTAAAATATAT-ATTTATT
27987 TTAATTT
1 TTAATTT
27994 CTTAAAAGTA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
21 4 0.14
22 7 0.25
23 4 0.14
24 3 0.11
25 10 0.36
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (23 bp):
TTAATTTAAAATATATATTTATT
Found at i:28665 original size:18 final size:18
Alignment explanation
Indices: 28642--28676 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
28632 ATTTTTATTA
28642 AATAAAAATAATATTTTT
1 AATAAAAATAATATTTTT
* *
28660 AATAAATATATTATTTT
1 AATAAAAATAATATTTT
28677 GAGTCAGGTC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
AATAAAAATAATATTTTT
Found at i:28777 original size:38 final size:38
Alignment explanation
Indices: 28723--28796 Score: 94
Period size: 38 Copynumber: 1.9 Consensus size: 38
28713 AAACCGGATT
* * *
28723 GAGTTTAGGTCGGGTGGAAAATATATATTTTTCGGGTG
1 GAGTTCAGGTCAGGTGGAAAATATATAATTTTCGGGTG
** *
28761 GAGTTCAGGTCAGGTGGAGGATTTATAATTTTCGGG
1 GAGTTCAGGTCAGGTGGAAAATATATAATTTTCGGG
28797 ACGGGTAGGT
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
38 30 1.00
ACGTcount: A:0.23, C:0.07, G:0.35, T:0.35
Consensus pattern (38 bp):
GAGTTCAGGTCAGGTGGAAAATATATAATTTTCGGGTG
Found at i:29071 original size:11 final size:11
Alignment explanation
Indices: 29055--29110 Score: 103
Period size: 11 Copynumber: 5.1 Consensus size: 11
29045 CTAAACAATA
29055 TGAATCAAATG
1 TGAATCAAATG
*
29066 TGAATCAAATA
1 TGAATCAAATG
29077 TGAATCAAATG
1 TGAATCAAATG
29088 TGAATCAAATG
1 TGAATCAAATG
29099 TGAATCAAATG
1 TGAATCAAATG
29110 T
1 T
29111 TTATCTTATT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 43 1.00
ACGTcount: A:0.46, C:0.09, G:0.16, T:0.29
Consensus pattern (11 bp):
TGAATCAAATG
Found at i:36882 original size:31 final size:31
Alignment explanation
Indices: 36841--36912 Score: 108
Period size: 31 Copynumber: 2.3 Consensus size: 31
36831 AAAACATAAG
*
36841 ATATGATCACTTTTGTTTTTATTTAATTAAA
1 ATATGATCACTTTCGTTTTTATTTAATTAAA
* *
36872 ATATGGTCACTTTCGTTTTTATTTAATTAAG
1 ATATGATCACTTTCGTTTTTATTTAATTAAA
*
36903 ATGTGATCAC
1 ATATGATCAC
36913 CCCGAGTTAA
Statistics
Matches: 36, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 36 1.00
ACGTcount: A:0.29, C:0.10, G:0.11, T:0.50
Consensus pattern (31 bp):
ATATGATCACTTTCGTTTTTATTTAATTAAA
Found at i:37730 original size:27 final size:25
Alignment explanation
Indices: 37671--37757 Score: 78
Period size: 25 Copynumber: 3.5 Consensus size: 25
37661 TTTATATGTA
*
37671 TTAACTTAAAATATTTT-TATATCAAC
1 TTAA-TTAAAATATTTTAT-TATTAAC
37697 TT-ATTAAACATATTTTATTATTAAC
1 TTAATTAAA-ATATTTTATTATTAAC
37722 TTAATTTAAAAATATTTTATT-TTAA-
1 TTAA-TT-AAAATATTTTATTATTAAC
37747 TT--TTAAAATAT
1 TTAATTAAAATAT
37758 ATAATTTATT
Statistics
Matches: 55, Mismatches: 1, Indels: 15
0.77 0.01 0.21
Matches are distributed among these distances:
21 7 0.13
22 2 0.04
24 5 0.09
25 18 0.33
26 8 0.15
27 12 0.22
28 3 0.05
ACGTcount: A:0.43, C:0.06, G:0.00, T:0.52
Consensus pattern (25 bp):
TTAATTAAAATATTTTATTATTAAC
Found at i:37747 original size:21 final size:23
Alignment explanation
Indices: 37722--37774 Score: 74
Period size: 25 Copynumber: 2.3 Consensus size: 23
37712 TATTATTAAC
37722 TTAATTTAAAA-ATAT-TTTATT
1 TTAATTTAAAATATATATTTATT
37743 TTAATTTTAAAATATATAATTTATT
1 TTAA-TTTAAAATATAT-ATTTATT
37768 TTAATTT
1 TTAATTT
37775 CTTAAAAGTA
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
21 4 0.14
22 7 0.25
23 4 0.14
24 3 0.11
25 10 0.36
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (23 bp):
TTAATTTAAAATATATATTTATT
Found at i:38445 original size:18 final size:18
Alignment explanation
Indices: 38422--38456 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
38412 ATTTTTATTA
38422 AATAAAAATAATATTTTT
1 AATAAAAATAATATTTTT
* *
38440 AATAAATATATTATTTT
1 AATAAAAATAATATTTT
38457 GAGTCAGGTC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (18 bp):
AATAAAAATAATATTTTT
Found at i:38848 original size:11 final size:11
Alignment explanation
Indices: 38832--38887 Score: 103
Period size: 11 Copynumber: 5.1 Consensus size: 11
38822 CTAAACAATA
38832 TGAATCAAATG
1 TGAATCAAATG
*
38843 TGAATCAAATA
1 TGAATCAAATG
38854 TGAATCAAATG
1 TGAATCAAATG
38865 TGAATCAAATG
1 TGAATCAAATG
38876 TGAATCAAATG
1 TGAATCAAATG
38887 T
1 T
38888 TTATCTTATT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 43 1.00
ACGTcount: A:0.46, C:0.09, G:0.16, T:0.29
Consensus pattern (11 bp):
TGAATCAAATG
Done.