genome.fa.s5272.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005272.1 Hibiscus syriacus cultivar Beakdansim tig00011920_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69013

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4387--4448	21	2.9	22	76	13	74	35	19	16	29	1.93
5448--5502	20	2.6	22	88	5	78	29	16	29	25	1.97
5541--5622	21	3.9	21	83	9	96	30	15	29	24	1.96
5940--6284	59	5.9	59	91	1	525	33	12	22	31	1.91
12497--12558	21	3.0	20	71	17	54	33	16	25	24	1.95
12580--12626	19	2.5	19	96	0	85	36	4	25	34	1.76
12891--13241	59	5.9	59	91	0	524	34	11	21	32	1.89
15254--15301	11	4.2	12	79	12	57	27	0	0	72	0.84
15254--15301	16	2.9	16	87	6	60	27	0	0	72	0.84
16826--16850	7	3.6	7	100	0	50	72	0	0	28	0.86
19820--19877	12	4.4	12	78	18	62	15	39	24	20	1.91
19820--19879	13	4.5	13	82	12	68	16	38	25	20	1.93
22309--22440	48	2.8	48	74	13	128	22	16	18	42	1.89
22326--22440	24	4.8	24	86	6	153	23	17	18	40	1.91
24569--24616	9	5.0	9	76	14	51	12	18	31	37	1.88
24624--24658	13	2.7	13	86	0	52	17	45	20	17	1.85
24642--24686	8	5.5	8	80	15	56	15	40	24	20	1.91
24620--24686	31	2.1	32	88	5	100	16	43	20	19	1.88
24659--24687	15	1.9	15	100	0	58	13	34	27	24	1.93
24642--24706	33	1.9	35	84	6	89	16	35	26	21	1.95
27119--27250	48	2.8	48	74	13	128	22	16	18	42	1.89
27136--27250	24	4.8	24	86	6	153	23	17	18	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29671--29701	16	1.9	16	93	0	53	48	0	3	48	1.17
38829--38874	3	15.3	3	100	0	92	67	0	0	32	0.91
42335--42384	20	2.5	20	87	12	68	26	20	28	26	1.99
42424--42467	19	2.4	19	81	14	56	36	18	22	22	1.95
42679--42858	89	2.0	89	95	0	324	35	13	16	34	1.88
43597--43647	20	2.5	20	83	0	66	47	15	13	23	1.82
43924--43970	13	3.6	13	86	11	60	72	0	0	27	0.85
44204--44246	17	2.6	16	82	17	52	55	6	6	30	1.53
48077--48128	19	2.7	19	100	0	104	30	30	21	17	1.96
52172--52233	20	3.1	20	92	0	106	29	17	22	30	1.97
54259--54330	26	2.8	25	86	10	101	44	4	2	48	1.36
54300--54354	21	2.7	20	75	5	56	40	5	5	49	1.49
54369--54484	21	5.4	21	65	12	65	43	9	6	41	1.62
54486--54542	22	2.5	22	78	15	64	43	7	3	45	1.48
55503--55547	18	2.4	18	85	7	54	20	8	24	46	1.78
57471--57658	59	3.2	59	81	1	225	27	17	23	30	1.97
58905--58958	18	3.1	16	80	15	54	50	31	3	14	1.61
63152--63180	15	1.9	15	100	0	58	0	17	0	82	0.66
64171--64233	18	3.5	18	97	0	117	22	1	39	36	1.64

Tables:   1

The End!