genome.fa.s5273.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005273.1 Hibiscus syriacus cultivar Beakdansim tig00011921_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92762

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4193--5176	106	9.4	104	89	4	1376	33	24	18	23	1.97
4943--5133	94	2.0	94	93	0	328	34	26	16	22	1.95
5297--5900	164	3.6	163	80	7	637	30	25	20	23	1.99
5297--5898	83	7.3	83	82	6	598	30	25	20	23	1.99
6120--6175	6	9.0	6	80	7	58	26	0	0	73	0.84
6124--6172	3	15.7	3	82	4	53	28	0	0	71	0.86
6123--6167	23	2.0	23	90	0	72	28	0	0	71	0.87
7823--7874	2	26.0	2	100	0	104	50	0	0	50	1.00
8610--8647	18	2.1	18	90	0	58	47	7	13	31	1.71
10087--10248	85	1.9	85	97	0	306	41	14	14	29	1.85
12380--12443	30	2.1	30	82	8	76	50	4	0	45	1.22
12432--12478	24	2.0	23	84	12	60	48	4	4	42	1.42
16280--16322	10	4.4	10	82	5	61	74	0	0	25	0.82
22330--22371	2	22.0	2	88	9	61	45	0	2	52	1.13
30057--30177	49	2.6	45	76	10	125	42	7	19	30	1.79
41996--42030	17	2.1	17	89	10	54	51	2	5	40	1.40
43560--43593	3	11.3	3	100	0	68	67	0	0	32	0.91
47732--47802	21	3.4	21	90	0	115	50	23	5	19	1.69
53522--53777	54	4.7	54	92	1	397	29	18	19	32	1.96
56095--56180	41	2.1	41	82	0	100	40	19	15	24	1.90
56340--56475	41	3.3	41	78	10	134	35	20	13	30	1.92
58922--58989	30	2.3	30	87	5	93	35	2	11	50	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59251--59279	14	2.0	15	93	6	51	37	0	0	62	0.96
60619--60711	21	4.5	21	78	4	100	39	18	24	17	1.91
60700--60834	20	6.7	20	73	3	90	36	22	17	23	1.95
60619--60711	41	2.3	41	100	0	186	39	18	24	17	1.91
60697--60815	41	2.9	41	93	0	193	40	21	15	22	1.91
60720--60795	21	3.7	21	67	3	64	44	18	15	21	1.86
61353--61432	18	4.5	18	74	17	78	46	25	17	11	1.81
61428--61611	19	10.1	19	75	15	165	11	22	22	43	1.85
61490--61586	33	2.9	33	89	3	142	11	23	25	39	1.88
61554--61611	20	2.9	20	80	10	64	13	24	18	43	1.87
62513--62550	20	1.9	20	88	0	58	50	21	15	13	1.78
62814--62857	22	2.0	22	95	0	79	18	15	45	20	1.85
63025--63120	20	4.6	22	71	12	69	22	16	21	38	1.93
63025--63122	41	2.4	41	84	0	133	22	16	21	39	1.92
63108--63241	20	6.5	21	77	4	139	17	24	17	40	1.91
63108--63241	41	3.3	41	100	0	241	17	24	17	40	1.91
63088--63241	82	1.9	82	90	5	249	18	24	18	38	1.92
63575--63599	3	8.3	3	100	0	50	0	0	32	68	0.90
65982--66049	27	2.5	27	95	0	118	19	11	17	51	1.75
66131--66171	21	2.0	21	95	0	73	41	0	17	41	1.49
67389--67492	29	3.6	29	74	5	93	35	5	9	49	1.60
67362--67481	58	2.1	58	87	1	170	30	9	13	47	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67385--67492	30	3.7	29	75	4	101	35	5	10	49	1.60
80010--80050	20	2.1	19	95	4	73	21	21	21	34	1.97
82460--82910	44	10.3	44	87	2	563	18	23	24	33	1.97
87222--87421	82	2.4	85	88	6	291	19	23	23	34	1.97
87222--87465	125	1.9	126	88	4	368	19	23	23	33	1.97
87222--87468	44	5.8	43	83	9	310	19	23	23	32	1.97

Tables:   1

The End!