genome.fa.s5275.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005275.1 Hibiscus syriacus cultivar Beakdansim tig00011926_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  131275

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
589--774	49	3.8	50	73	13	170	51	11	8	29	1.66
956--1046	48	1.9	47	84	6	121	51	0	4	43	1.21
1537--1588	27	1.9	27	84	7	70	34	13	15	36	1.87
3597--3649	27	2.0	27	84	0	70	11	41	11	35	1.77
3989--4070	20	4.2	20	72	7	60	42	10	9	36	1.73
3990--4064	39	1.9	39	83	5	98	41	10	9	38	1.72
4331--4371	22	1.9	21	95	5	73	53	2	4	39	1.35
16577--16669	39	2.4	39	83	5	109	34	25	16	23	1.95
19204--19237	2	17.0	2	100	0	68	50	0	0	50	1.00
19769--19812	22	1.9	24	86	9	65	50	2	6	40	1.42
20132--20192	31	1.9	32	86	3	88	27	11	8	52	1.66
21326--21555	65	3.6	65	78	11	217	29	24	18	27	1.98
27303--27364	20	3.2	20	84	9	92	20	20	33	24	1.97
35296--35329	16	2.1	17	88	5	52	14	11	14	58	1.63
36636--36762	64	2.0	65	85	4	177	29	24	19	26	1.99
41138--41167	2	15.0	2	100	0	60	50	0	0	50	1.00
46579--46618	16	2.5	16	87	0	53	47	25	2	25	1.64
46964--47279	107	3.0	103	82	5	400	31	16	11	41	1.83
47293--47384	36	2.6	36	89	0	139	30	18	13	38	1.89
47684--47746	33	1.9	33	86	0	90	30	14	12	42	1.82
47667--47831	29	5.6	29	74	11	120	30	13	12	44	1.80
47772--47826	28	2.0	27	86	6	76	30	9	12	47	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47858--47930	29	2.6	28	83	12	87	34	12	12	41	1.80
47766--47970	93	2.2	92	85	5	261	31	13	13	42	1.82
48218--48292	39	1.9	38	89	2	114	21	37	16	25	1.93
48207--48564	133	2.7	133	88	0	509	26	32	16	24	1.96
48762--48799	3	12.7	3	89	10	60	34	0	0	65	0.93
48755--48795	12	3.4	12	90	10	66	31	0	0	68	0.90
54031--54061	4	7.8	4	100	0	62	77	0	0	22	0.77
54642--55778	136	8.4	136	84	1	1289	27	22	16	34	1.95
54642--55791	408	2.8	405	83	2	1428	27	22	16	34	1.95
57245--57286	18	2.3	18	88	8	59	42	0	2	54	1.13
57245--57294	15	3.5	15	84	12	54	42	0	2	56	1.11
58329--58367	13	2.8	13	88	7	51	25	2	0	71	0.98
58507--58550	23	2.0	23	86	4	63	38	6	0	54	1.27
67453--67561	40	2.8	39	84	1	155	32	16	17	33	1.92
67453--67568	20	5.8	20	80	6	137	30	18	17	34	1.93
67742--68087	35	9.9	35	84	0	415	35	15	20	28	1.94
68281--68327	3	15.7	3	86	8	69	36	0	2	61	1.08
68266--68325	18	3.3	18	82	13	70	40	0	1	58	1.08
71855--71890	16	2.3	16	90	4	56	2	8	8	80	0.99
74397--74431	18	1.9	18	88	0	52	17	17	34	31	1.93
75907--75937	15	2.1	15	100	0	62	12	25	35	25	1.92
79811--79835	2	12.5	2	100	0	50	52	48	0	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79835--79893	2	29.5	2	100	0	118	50	0	0	49	1.00
82226--82268	17	2.3	18	80	15	52	65	2	2	30	1.18
86109--87246	106	10.8	106	95	0	1971	23	17	25	34	1.96
86109--87246	316	3.6	318	94	1	1980	23	17	25	34	1.96
86109--87246	422	2.7	423	94	0	2010	23	17	25	34	1.96
89328--89377	26	1.9	26	87	0	73	64	2	14	20	1.39
91002--91030	6	4.8	6	100	0	58	51	0	0	48	1.00
97865--97906	19	2.2	19	95	0	75	38	21	2	38	1.67
103065--103116	5	10.0	5	78	19	54	76	0	1	21	0.87
103054--103107	12	4.2	13	84	15	69	75	0	0	24	0.80
103054--103115	26	2.4	25	89	5	97	75	0	1	22	0.88
107837--108568	68	10.8	68	87	0	1007	29	14	24	31	1.95
108518--109157	81	7.9	79	83	4	726	35	10	24	30	1.89
108518--109159	243	2.6	242	86	1	867	35	10	24	29	1.89
112672--113209	81	6.7	79	87	3	720	34	11	24	28	1.91
112672--113184	243	2.1	243	90	3	802	34	11	24	29	1.91
115294--115319	10	2.6	10	100	0	52	19	0	0	80	0.71
117289--117318	12	2.6	12	94	5	53	26	43	0	30	1.55
120709--120794	24	3.6	24	87	0	127	17	44	16	22	1.87
122019--122072	12	4.7	12	84	6	76	27	37	0	35	1.57
124497--124603	35	3.0	36	94	2	189	35	14	14	34	1.88
126131--126169	19	2.1	19	95	0	69	61	0	12	25	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
129238--129329	31	3.0	31	95	0	166	33	9	28	28	1.89
129876--129980	35	3.0	36	90	6	171	36	14	15	34	1.87

Tables:   1

The End!