genome.fa.s5277.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005277.1 Hibiscus syriacus cultivar Beakdansim tig00011934_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81200

Tables:   1   

This is table  1  of  1  ( 83 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
598--646	19	2.4	21	80	13	66	0	22	8	69	1.14
1073--1109	11	3.5	11	82	17	51	43	0	0	56	0.99
1105--1167	3	21.7	3	87	6	94	61	0	0	38	0.96
1458--1483	3	8.7	3	100	0	52	30	0	0	69	0.89
2352--2396	22	2.0	22	100	0	90	15	13	22	48	1.79
4584--4631	23	2.1	23	84	0	60	35	10	18	35	1.85
4708--4752	22	2.0	22	83	8	56	40	13	8	37	1.76
5057--5115	23	2.6	23	88	0	82	40	16	5	37	1.71
5515--5601	39	2.2	39	95	0	156	17	13	20	48	1.81
5861--5897	18	2.1	18	89	0	56	51	10	5	32	1.60
6281--6331	25	2.0	25	92	0	84	39	19	7	33	1.81
6595--6665	21	3.3	21	77	13	72	39	22	4	33	1.74
6600--6670	23	3.2	22	84	8	90	39	22	4	33	1.74
7093--7148	23	2.4	23	87	0	85	37	17	5	39	1.73
7172--7219	22	2.2	22	78	14	55	39	10	14	35	1.80
7491--7556	25	2.6	25	80	0	87	42	13	9	34	1.76
10689--10753	23	2.8	23	92	0	103	38	20	6	35	1.77
12339--12418	9	8.6	9	72	8	61	22	33	6	37	1.79
12342--12430	12	7.4	12	87	0	97	21	33	7	37	1.82
12338--12418	6	13.5	6	82	0	81	23	33	6	37	1.80
12354--12430	36	2.1	36	92	0	127	20	33	9	36	1.85
12342--12433	6	15.3	6	81	0	76	20	33	7	38	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13896--15251	199	6.8	199	97	0	2538	31	17	15	36	1.90
15368--15416	19	2.6	19	93	0	80	57	10	2	30	1.43
17206--17270	33	2.0	33	87	3	96	21	47	0	30	1.51
17303--17346	21	2.1	21	91	0	70	15	31	11	40	1.83
19706--19752	20	2.3	20	89	10	78	17	17	10	55	1.69
19801--20521	228	3.1	228	97	1	1345	39	8	7	44	1.63
20766--20790	11	2.3	11	100	0	50	36	24	8	32	1.84
21357--21443	35	2.5	35	81	14	99	39	0	2	58	1.11
21585--21638	17	3.2	17	78	0	63	31	0	1	66	1.02
32849--32897	23	2.1	23	88	0	71	20	6	4	69	1.27
32849--32922	23	3.2	22	76	17	62	17	6	8	67	1.38
41764--41839	33	2.5	32	79	12	88	40	0	1	57	1.07
43551--43598	21	2.3	21	85	0	60	25	39	12	22	1.89
43602--43674	21	3.5	21	88	7	112	17	34	27	20	1.95
44195--44301	34	3.1	34	89	0	160	55	4	3	36	1.39
44696--45686	128	7.7	128	95	0	1775	34	20	24	20	1.97
45767--45804	8	4.9	8	80	6	51	39	26	0	34	1.57
50186--50260	37	2.0	37	80	14	84	48	2	1	48	1.24
51134--51164	16	1.9	16	100	0	62	61	0	6	32	1.21
54557--54714	21	7.8	20	70	7	77	38	24	17	18	1.93
54681--54910	20	11.5	20	80	5	223	36	24	18	20	1.94
58121--58356	19	13.7	19	72	21	198	46	18	22	13	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58121--58350	33	6.8	33	79	14	236	47	18	21	12	1.81
58149--58318	52	3.2	52	97	0	322	47	17	22	13	1.82
58365--58440	20	4.2	19	75	17	72	14	23	15	46	1.83
58365--58443	19	4.4	19	76	16	96	15	22	16	45	1.84
58550--58586	14	2.6	14	91	0	65	45	21	0	32	1.52
60561--60617	14	3.7	14	77	20	60	45	22	21	10	1.82
60542--60634	33	2.8	33	95	0	168	47	21	20	10	1.80
60507--60639	19	7.5	19	76	16	124	46	23	19	10	1.81
60635--60744	19	6.3	18	70	22	83	9	16	28	46	1.77
60635--60726	33	2.8	33	93	3	150	7	17	28	46	1.75
60792--61353	93	6.1	93	99	0	1108	46	19	12	21	1.83
63073--63156	19	4.7	19	74	14	88	46	21	21	10	1.81
63051--63151	52	1.9	52	93	0	175	49	19	20	9	1.77
63168--63224	14	3.7	14	75	20	60	10	24	22	42	1.85
63165--63229	33	2.0	33	100	0	130	10	24	21	43	1.84
63208--63285	41	1.9	41	97	0	147	12	25	16	44	1.83
63209--63284	21	3.7	21	83	3	109	11	25	17	46	1.82
63364--63434	33	2.2	33	89	0	106	49	18	21	11	1.78
63616--63670	22	2.5	22	81	0	74	20	16	40	23	1.91
63817--64010	20	9.6	20	81	5	212	19	19	25	35	1.95
63817--64010	60	3.2	60	81	3	237	19	19	25	35	1.95
63997--64079	21	4.0	21	70	6	69	26	16	22	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64389--64492	42	2.4	44	80	4	124	25	23	14	37	1.92
66753--66793	5	8.2	5	86	10	57	75	0	0	24	0.80
66763--66792	14	2.1	14	100	0	60	80	0	0	20	0.72
66753--66793	19	2.0	21	90	9	68	75	0	0	24	0.80
68226--68302	30	2.6	30	76	0	91	27	19	14	38	1.90
68673--68745	22	3.2	23	80	11	87	41	0	17	41	1.50
68694--68743	11	4.5	11	80	5	57	34	0	16	50	1.45
69399--69446	21	2.4	21	79	6	55	45	10	18	25	1.81
69994--70038	17	2.5	19	75	17	51	35	13	0	51	1.41
70287--70347	22	2.8	22	85	5	79	26	26	19	27	1.99
70815--70846	2	16.0	2	100	0	64	50	0	0	50	1.00
72291--72326	2	18.0	2	100	0	72	50	0	0	50	1.00
75936--75995	21	3.2	21	65	30	62	30	5	21	43	1.74
75927--76043	35	3.3	35	86	7	155	31	5	19	43	1.73
75927--76044	37	3.2	36	86	4	157	32	5	19	43	1.73
80423--80566	34	4.2	35	89	5	222	31	4	20	43	1.73
80423--80566	70	2.1	70	90	5	231	31	4	20	43	1.73

Tables:   1

The End!