Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005278.1 Hibiscus syriacus cultivar Beakdansim tig00011935_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  119768

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
224--295
26
2.8
26
95
2
128
36
22
6
34
1.81
2763--2800
15
2.5
16
83
12
53
34
2
7
55
1.43
5308--5522
77
2.8
76
83
6
233
37
17
7
37
1.78
8559--8598
3
13.0
3
89
5
62
62
0
0
37
0.95
8560--8610
9
5.5
10
81
11
56
66
0
0
33
0.92
9056--9917
241
3.6
240
90
2
1279
24
19
24
32
1.98
19586--19634
20
2.5
20
80
3
55
16
18
0
65
1.28
32416--32455
15
2.9
14
82
10
55
87
0
10
2
0.63
32413--32453
17
2.6
16
85
11
57
85
0
12
2
0.70
35911--35942
2
16.0
2
100
0
64
50
0
0
50
1.00
35982--36028
2
23.5
2
100
0
94
48
0
0
51
1.00
36026--36121
34
2.7
35
75
15
99
17
8
1
72
1.14
36026--36106
33
2.5
32
81
13
94
17
8
0
74
1.06
36194--36307
4
27.8
4
66
26
53
19
9
0
70
1.20
36192--36254
9
7.0
9
71
18
51
22
6
0
71
1.08
36193--36265
30
2.4
31
82
10
89
20
6
0
72
1.07
36244--36306
23
2.7
23
74
13
67
17
12
1
68
1.29
38395--38456
3
19.3
3
81
15
63
61
0
0
38
0.96
38396--38456
10
6.6
10
82
17
71
60
0
0
39
0.97
38389--38468
10
8.3
10
77
15
62
63
0
0
36
0.94
45325--45632
20
15.2
20
77
14
260
41
22
19
16
1.90
45325--45632
40
7.6
39
84
8
293
41
22
19
16
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46243--46294
6
8.7
6
100
0
104
0
17
50
32
1.47
46389--46636
20
12.2
20
78
14
224
16
19
21
43
1.88
46418--46560
42
3.5
42
89
3
193
16
20
23
39
1.92
53186--53223
15
2.5
15
100
0
76
36
21
28
13
1.91
57682--57721
21
1.9
21
85
10
55
30
20
25
25
1.99
61320--61395
20
3.8
20
94
0
134
26
19
18
35
1.95
61869--61963
39
2.4
39
82
3
111
34
14
1
49
1.51
62099--62125
2
13.5
2
100
0
54
48
0
0
51
1.00
63114--63151
20
1.9
20
94
0
67
39
10
26
23
1.87
74420--74486
35
1.9
35
100
0
134
37
2
17
41
1.65
74417--74495
35
2.3
34
89
6
131
36
3
16
43
1.66
76058--76125
2
35.0
2
94
5
122
50
0
0
50
1.00
79004--79103
3
33.3
3
93
0
173
64
0
3
33
1.09
79255--80053
134
6.1
133
79
8
825
27
17
25
29
1.97
103001--103034
17
2.0
17
94
0
59
20
17
5
55
1.62
105033--105111
8
9.8
8
76
13
81
81
0
16
2
0.81
105067--105126
12
4.8
12
72
13
50
75
0
23
1
0.90
105044--105134
38
2.5
35
84
12
114
76
0
18
4
0.94
107137--107186
24
2.1
24
85
7
66
60
14
2
24
1.45
107836--107877
18
2.3
18
87
0
57
42
35
7
14
1.73
107845--107880
18
2.0
18
100
0
72
44
27
5
22
1.75
110506--110558
20
2.6
21
79
11
56
71
0
15
13
1.14

Tables:   1

The End!