Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005279.1 Hibiscus syriacus cultivar Beakdansim tig00011938_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 66993
ACGTcount: A:0.31, C:0.17, G:0.18, T:0.33
Found at i:2998 original size:19 final size:20
Alignment explanation
Indices: 2960--3010 Score: 77
Period size: 19 Copynumber: 2.6 Consensus size: 20
2950 AAGAAGAGAA
2960 GAAGAAAGAAGAGAAAAGAG
1 GAAGAAAGAAGAGAAAAGAG
*
2980 GAAGAAATAAGAG-AAAGAG
1 GAAGAAAGAAGAGAAAAGAG
*
2999 AAAGAAAGAAGA
1 GAAGAAAGAAGA
3011 AGAAGAGAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
19 16 0.57
20 12 0.43
ACGTcount: A:0.67, C:0.00, G:0.31, T:0.02
Consensus pattern (20 bp):
GAAGAAAGAAGAGAAAAGAG
Found at i:3016 original size:19 final size:18
Alignment explanation
Indices: 2944--3019 Score: 75
Period size: 19 Copynumber: 4.2 Consensus size: 18
2934 CACCGAGAGT
*
2944 GAAAAAAAGAAGAGAAGAA
1 GAAAGAAAGAAGAGAAG-A
*
2963 GAAAG-AAG-AGAAAAGA
1 GAAAGAAAGAAGAGAAGA
* *
2979 GGAAGAAATAAGAGAAAGA
1 GAAAGAAAGAAGAG-AAGA
2998 GAAAGAAAGAAGAAGAAGA
1 GAAAGAAAGAAG-AGAAGA
3017 GAA
1 GAA
3020 TATCGGTTCG
Statistics
Matches: 46, Mismatches: 7, Indels: 8
0.75 0.11 0.13
Matches are distributed among these distances:
16 5 0.11
17 8 0.17
18 6 0.13
19 25 0.54
20 2 0.04
ACGTcount: A:0.68, C:0.00, G:0.30, T:0.01
Consensus pattern (18 bp):
GAAAGAAAGAAGAGAAGA
Found at i:4373 original size:13 final size:13
Alignment explanation
Indices: 4355--4379 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
4345 AGAATAAATA
4355 AATTTTAATTAAG
1 AATTTTAATTAAG
4368 AATTTTAATTAA
1 AATTTTAATTAA
4380 AATACATAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.04, T:0.48
Consensus pattern (13 bp):
AATTTTAATTAAG
Found at i:6974 original size:3 final size:3
Alignment explanation
Indices: 6966--7003 Score: 67
Period size: 3 Copynumber: 12.3 Consensus size: 3
6956 TTAAAAAATG
6966 AAT AAT AAT AAT AAT AAT AAT AAT AAAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT AAT A
7004 TATATATACA
Statistics
Matches: 34, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 31 0.91
4 3 0.09
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:6994 original size:25 final size:25
Alignment explanation
Indices: 6969--7019 Score: 81
Period size: 22 Copynumber: 2.2 Consensus size: 25
6959 AAAAATGAAT
6969 AATAATAATAATA-ATA-ATA-ATA
1 AATAATAATAATATATATATACATA
6991 AATAATAATAATATATATATACATA
1 AATAATAATAATATATATATACATA
7016 AATA
1 AATA
7020 TTTTCAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
22 13 0.50
23 3 0.12
24 3 0.12
25 7 0.27
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (25 bp):
AATAATAATAATATATATATACATA
Found at i:7124 original size:71 final size:71
Alignment explanation
Indices: 7037--7176 Score: 210
Period size: 71 Copynumber: 2.0 Consensus size: 71
7027 AAACACATAA
** * *
7037 TATATAAATTTTC-AAAATGTTTTTTTAAACTATATAATATACGAATGTTTTCAACATGTTTTCA
1 TATATAAATTTTCAAAAATG-TTTTAAAAACTATATAATATACAAATGTTTTCAAAATGTTTTCA
7101 AAAATAT
65 AAAATAT
* *
7108 TATATAATTTTTCAAAAATGTTTTAAAAACTATATAATATATAAATGTTTTCAAAATGTTTTCAA
1 TATATAAATTTTCAAAAATGTTTTAAAAACTATATAATATACAAATGTTTTCAAAATGTTTTCAA
7173 AAAT
66 AAAT
7177 GTTTTCAAAA
Statistics
Matches: 62, Mismatches: 6, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
71 56 0.90
72 6 0.10
ACGTcount: A:0.44, C:0.07, G:0.05, T:0.44
Consensus pattern (71 bp):
TATATAAATTTTCAAAAATGTTTTAAAAACTATATAATATACAAATGTTTTCAAAATGTTTTCAA
AAATAT
Found at i:7166 original size:11 final size:11
Alignment explanation
Indices: 7150--7186 Score: 65
Period size: 11 Copynumber: 3.3 Consensus size: 11
7140 TATAATATAT
7150 AAATGTTTTCA
1 AAATGTTTTCA
7161 AAATGTTTTCAA
1 AAATGTTTTC-A
7173 AAATGTTTTCA
1 AAATGTTTTCA
7184 AAA
1 AAA
7187 ATTATATATA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
11 14 0.56
12 11 0.44
ACGTcount: A:0.43, C:0.08, G:0.08, T:0.41
Consensus pattern (11 bp):
AAATGTTTTCA
Found at i:7177 original size:12 final size:12
Alignment explanation
Indices: 7150--7188 Score: 71
Period size: 12 Copynumber: 3.3 Consensus size: 12
7140 TATAATATAT
7150 AAATGTTTTC-A
1 AAATGTTTTCAA
7161 AAATGTTTTCAA
1 AAATGTTTTCAA
7173 AAATGTTTTCAA
1 AAATGTTTTCAA
7185 AAAT
1 AAAT
7189 TATATATATA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 10 0.37
12 17 0.63
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.41
Consensus pattern (12 bp):
AAATGTTTTCAA
Found at i:7260 original size:73 final size:72
Alignment explanation
Indices: 7172--7308 Score: 172
Period size: 73 Copynumber: 1.9 Consensus size: 72
7162 AATGTTTTCA
* * * *
7172 AAAATGTTTTCAAAAATTATATA-TATA-AGTTTTCAAAATGA-TTTTAAAAATTATATATTATA
1 AAAATGTTTTCAAAAACTATACATTATATAGTTTT-AAAA--ACTATTAAAAACTATATATTATA
7234 TATATTTTTT
63 TATATTTTTT
*
7244 AAAATGTTTTTTAAAAACTATACATTATATAGTTTTAAAAACTATTAAAAACTATATATTATATA
1 AAAATG-TTTTCAAAAACTATACATTATATAGTTTTAAAAACTATTAAAAACTATATATTATATA
7309 CGTAGTTTTA
Statistics
Matches: 56, Mismatches: 5, Indels: 7
0.82 0.07 0.10
Matches are distributed among these distances:
72 7 0.12
73 35 0.62
74 8 0.14
75 6 0.11
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.45
Consensus pattern (72 bp):
AAAATGTTTTCAAAAACTATACATTATATAGTTTTAAAAACTATTAAAAACTATATATTATATAT
ATTTTTT
Found at i:7260 original size:85 final size:83
Alignment explanation
Indices: 7080--7253 Score: 246
Period size: 85 Copynumber: 2.1 Consensus size: 83
7070 ATAATATACG
* *
7080 AATGTTTTC-AACATGTTTTCAAAAATATTATATAATTTTTCAAAAATGTTTTAAAAACTATATA
1 AATGTTTTCAAAAATGTTTTCAAAAATATTATATAAGTTTTCAAAAATGTTTTAAAAACTATATA
7144 ATATATAAATGTTTTCAA
66 ATATATAAATGTTTTCAA
*
7162 AATGTTTTCAAAAATGTTTTCAAAAATTATATATATAAGTTTTC-AAAATGATTTTAAAAATTAT
1 AATGTTTTCAAAAATGTTTTCAAAAA-TAT-TATATAAGTTTTCAAAAATG-TTTTAAAAACTAT
* * *
7226 ATATTATATATAT-TTTTTAA
63 ATAATATATAAATGTTTTCAA
7246 AATGTTTT
1 AATGTTTT
7254 TTAAAAACTA
Statistics
Matches: 82, Mismatches: 6, Indels: 6
0.87 0.06 0.06
Matches are distributed among these distances:
82 9 0.11
83 15 0.18
84 23 0.28
85 35 0.43
ACGTcount: A:0.43, C:0.05, G:0.05, T:0.47
Consensus pattern (83 bp):
AATGTTTTCAAAAATGTTTTCAAAAATATTATATAAGTTTTCAAAAATGTTTTAAAAACTATATA
ATATATAAATGTTTTCAA
Found at i:8095 original size:84 final size:84
Alignment explanation
Indices: 7990--8605 Score: 666
Period size: 84 Copynumber: 7.4 Consensus size: 84
7980 AAGGTCTTTA
* * * * *
7990 GCAGATAACCCTTCTGGACTTAAGCTATACTGCAAATGATGTGCCGTTGAGCTGAGTGTAGTCAA
1 GCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTTGAGCTGAGTGTAGTCGA
8055 ACTCAAAGGTCTTTTGTTG
66 ACTCAAAGGTCTTTTGTTG
* * * * *
8074 GCAAACAACCCTTCTAGACTTAAGTTGTGCTGCAAATGATGTG-CCTTGGAGCTGAGCGTAGTCG
1 GCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTT-GAGCTGAGTGTAGTCG
* *
8138 AACTCGAAGGTCTTTGGTTG
65 AACTCAAAGGTCTTTTGTTG
* *
8158 GCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCG
1 GCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTTG-AGCTGAGTGTAGTCG
***
8223 AACTCGGGGGTC---T-TTG
65 AACTCAAAGGTCTTTTGTTG
* * * * *
8239 GCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCGTTGAGCTGAGCGTAGTCTA
1 GCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTTGAGCTGAGTGTAGTCGA
* *
8304 ACTCAAAGGTCTTTTGGTC
66 ACTCAAAGGTCTTTTGTTG
* * * * * * *
8323 ACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCG
1 GCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTTG-AGCTGAGTGTAGTCG
***
8388 AACTCGGGGGTC---T-TTG
65 AACTCAAAGGTCTTTTGTTG
* * * *
8404 GCAGATAGCCCTTCTTGACTTAAGCTATGCTGCAAATGATGTG-CCTTGGAGCTGAGCGTAGTCG
1 GCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTT-GAGCTGAGTGTAGTCG
*
8468 AACTCAAAGGTCTTTGGTTG
65 AACTCAAAGGTCTTTTGTTG
* * *
8488 GCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAAAGATGTGCCCTCGAAGCTGAGTGTAATCG
1 GCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTTG-AGCTGAGTGTAGTCG
***
8553 AACTCGGGGGTC---T-TTG
65 AACTCAAAGGTCTTTTGTTG
* *
8569 GCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAAT
1 GCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAAT
8606 AGTTTGTTTA
Statistics
Matches: 439, Mismatches: 78, Indels: 33
0.80 0.14 0.06
Matches are distributed among these distances:
80 46 0.10
81 123 0.28
82 1 0.00
83 4 0.01
84 193 0.44
85 72 0.16
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.29
Consensus pattern (84 bp):
GCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTTGAGCTGAGTGTAGTCGA
ACTCAAAGGTCTTTTGTTG
Found at i:8261 original size:249 final size:245
Alignment explanation
Indices: 7974--8557 Score: 729
Period size: 249 Copynumber: 2.3 Consensus size: 245
7964 AATATAATTA
* * * *
7974 AACTCGAAGGTCTTTAGCAGATAACCCTTCTGGACTTAAGCTATACTGCAAATGATGTGCCGTTG
1 AACTCAAAGGTCTTTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCGTTG
* ** *
8039 AGCTGAGTGTAGTCAAACTCAAAGGTCTTTTGTTGGCAAACAACCCTTCTAGACTTAAGTTGTGC
66 AGCTGAGTGTAGTCAAACTCAAAGGTCTTTTGGTCACAAACAACCCTTCTAGACTTAAGTTATGC
* * *
8104 TGCAAATGATGTG-CCTTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTGGCAGATAACC
131 TGCAAATGATGTGCCCTCGAAGCTGAGCGTAATCGAACTCGAAGGTC--T--TTGGCAGATAACC
* *
8168 CTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCG
192 CTTCTCGACTTAAGCTATGCTGCAAATGATGTG-CCTCGAAGCTGAGCGTAATCG
*** *
8223 AACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCGTTG
1 AACTCAAAGGTCTTTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCGTTG
* * * * * *
8288 AGCTGAGCGTAGTCTAACTCAAAGGTCTTTTGGTCACAGATAACCCTTCTAGCCTTGAGTTATGC
66 AGCTGAGTGTAGTCAAACTCAAAGGTCTTTTGGTCACAAACAACCCTTCTAGACTTAAGTTATGC
* * ** *
8353 TGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCGAACTCGGGGGTCTTTGGCAGATAGCCCTTC
131 TGCAAATGATGTGCCCTCGAAGCTGAGCGTAATCGAACTCGAAGGTCTTTGGCAGATAACCCTTC
* * * *
8418 TTGACTTAAGCTATGCTGCAAATGATGTGCCTTGGAGCTGAGCGTAGTCG
196 TCGACTTAAGCTATGCTGCAAATGATGTGCCTCGAAGCTGAGCGTAATCG
* *
8468 AACTCAAAGGTCTTTGGTTGGCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAAAGATGTGCC
1 AACTCAAAGGTC--T--TTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCC
* * * *
8533 CTCGAAGCTGAGTGTAATCGAACTC
62 GTTG-AGCTGAGTGTAGTCAAACTC
8558 GGGGGTCTTT
Statistics
Matches: 288, Mismatches: 41, Indels: 11
0.85 0.12 0.03
Matches are distributed among these distances:
245 26 0.09
246 43 0.15
247 1 0.00
248 1 0.00
249 173 0.60
250 44 0.15
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.29
Consensus pattern (245 bp):
AACTCAAAGGTCTTTGGCAGATAACCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCGTTG
AGCTGAGTGTAGTCAAACTCAAAGGTCTTTTGGTCACAAACAACCCTTCTAGACTTAAGTTATGC
TGCAAATGATGTGCCCTCGAAGCTGAGCGTAATCGAACTCGAAGGTCTTTGGCAGATAACCCTTC
TCGACTTAAGCTATGCTGCAAATGATGTGCCTCGAAGCTGAGCGTAATCG
Found at i:8293 original size:165 final size:165
Alignment explanation
Indices: 7990--8605 Score: 923
Period size: 165 Copynumber: 3.7 Consensus size: 165
7980 AAGGTCTTTA
* * * * * * *
7990 GCAGATAACCCTTCTGGACTTAAGCTATACTGCAAATGATGTGCCGTTG-AGCTGAGTGTAGTCA
1 GCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCG
*** * * * * * *
8054 AACTCAAAGGTCTTTTGTTGGCAAACAACCCTTCTAGACTTAAGTTGTGCTGCAAATGATGTGCC
66 AACTCGGGGGTC---T-TTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCC
*
8119 TTGGAGCTGAGCGTAGTCGAACTCGAAGGTCTTTGGTTG
127 TTGGAGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTG
8158 GCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCG
1 GCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCG
8223 AACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCGTT-
66 AACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCC-TTG
* *
8287 GAGCTGAGCGTAGTCTAACTCAAAGGTCTTTTGG-TC
130 GAGCTGAGCGTAGTCGAACTCAAAGGTC-TTTGGTTG
* * * * *
8323 ACAGATAACCCTTCTAGCCTTGAGTTATGCTGTAAATGATGTGCCCTCGAAGCTGAGTGTAATCG
1 GCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCG
*
8388 AACTCGGGGGTCTTTGGCAGATAGCCCTTCTTGACTTAAGCTATGCTGCAAATGATGTGCCTTGG
66 AACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGG
8453 AGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTG
131 AGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTG
*
8488 GCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAAAGATGTGCCCTCGAAGCTGAGTGTAATCG
1 GCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCG
8553 AACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAAT
66 AACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAAT
8606 AGTTTGTTTA
Statistics
Matches: 409, Mismatches: 34, Indels: 13
0.90 0.07 0.03
Matches are distributed among these distances:
164 7 0.02
165 328 0.80
166 8 0.02
168 44 0.11
169 22 0.05
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.29
Consensus pattern (165 bp):
GCAGATAACCCTTCTCGACTTAAGTTATGCTGCAAATGATGTGCCCTCGAAGCTGAGTGTAATCG
AACTCGGGGGTCTTTGGCAGATAGCCCTTCTCGACTTAAGCTATGCTGCAAATGATGTGCCTTGG
AGCTGAGCGTAGTCGAACTCAAAGGTCTTTGGTTG
Found at i:9959 original size:95 final size:95
Alignment explanation
Indices: 9780--9978 Score: 301
Period size: 95 Copynumber: 2.1 Consensus size: 95
9770 GGACAGCCCA
* * * * *
9780 ATATGTAAACACCTTTATCAGGTTAGCTGAAATCTTATCCATAAAGCCGGGGCATTTATCCAATT
1 ATATATAATCACCTTTATCAGGCTAGCTGAAATATTATCCATAAAGCCGGGGCATTTAACCAATT
* *
9845 GCCTTAGAGGGATAGCTCAAGCTTTATTGT
66 GCCTTAGAGGGACAACTCAAGCTTTATTGT
*
9875 ATAGTATAATCACCTTTATCAGGCTAGCTG-AATATTATCCATAAAGCCGGGGCGTTTAACCAAT
1 ATA-TATAATCACCTTTATCAGGCTAGCTGAAATATTATCCATAAAGCCGGGGCATTTAACCAAT
*
9939 TGCTTTAGAGGGACAACTCAAGCTTTATTGT
65 TGCCTTAGAGGGACAACTCAAGCTTTATTGT
9970 ATATATAAT
1 ATATATAAT
9979 AGTGTAATCT
Statistics
Matches: 94, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
94 6 0.06
95 65 0.69
96 23 0.24
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.33
Consensus pattern (95 bp):
ATATATAATCACCTTTATCAGGCTAGCTGAAATATTATCCATAAAGCCGGGGCATTTAACCAATT
GCCTTAGAGGGACAACTCAAGCTTTATTGT
Found at i:14847 original size:3 final size:3
Alignment explanation
Indices: 14839--14870 Score: 55
Period size: 3 Copynumber: 10.3 Consensus size: 3
14829 TTAAAAAATG
14839 AAT AAT AAT AAT AAT AAT AAT AAAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT -AAT AAT AAT A
14871 TATATATGTA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 25 0.89
4 3 0.11
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:14987 original size:71 final size:71
Alignment explanation
Indices: 14902--15041 Score: 201
Period size: 71 Copynumber: 2.0 Consensus size: 71
14892 AAACACATAA
* ** * *
14902 TATATAAATTTTC-AAAATGTTTTTTTAAACTATATAATATACGAATGTTTTCAACATGTTTTCA
1 TATATAAATTTTCAAAAACG-TTTTAAAAACTATATAATATACAAATGTTTTCAAAATGTTTTCA
14966 AAAATAT
65 AAAATAT
* *
14973 TATATAATTTTTCAAAAACGTTTTAAAAACTATATAATATATAAATGTTTTCAAAATGTTTTCAA
1 TATATAAATTTTCAAAAACGTTTTAAAAACTATATAATATACAAATGTTTTCAAAATGTTTTCAA
15038 AAAT
66 AAAT
15042 GTTTTCAAAA
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
71 56 0.92
72 5 0.08
ACGTcount: A:0.44, C:0.08, G:0.05, T:0.44
Consensus pattern (71 bp):
TATATAAATTTTCAAAAACGTTTTAAAAACTATATAATATACAAATGTTTTCAAAATGTTTTCAA
AAATAT
Found at i:15024 original size:39 final size:36
Alignment explanation
Indices: 14880--15040 Score: 134
Period size: 37 Copynumber: 4.4 Consensus size: 36
14870 ATATATATGT
* *
14880 AAATATTTTCAAAAACACATAATATATAAA-TTTTCA
1 AAATGTTTT-AAAAACATATAATATATAAATTTTTCA
** **
14916 AAATGTTTTTTTAAACTATATAATATACGAATGTTTTCA
1 AAATG-TTTTAAAAAC-ATATAATATATAAAT-TTTTCA
* *
14955 ACATGTTTTCAAAA-ATAT--TATAT-AATTTTTCAA
1 AAATGTTTTAAAAACATATAATATATAAATTTTTC-A
*
14988 AAACGTTTTAAAAACTATATAATATATAAATGTTTTCA
1 AAATGTTTTAAAAAC-ATATAATATATAAAT-TTTTCA
15026 AAATGTTTTCAAAAA
1 AAATGTTTT-AAAAA
15041 TGTTTTCAAA
Statistics
Matches: 99, Mismatches: 14, Indels: 21
0.74 0.10 0.16
Matches are distributed among these distances:
32 5 0.05
33 15 0.15
34 4 0.04
35 4 0.04
36 12 0.12
37 20 0.20
38 19 0.19
39 20 0.20
ACGTcount: A:0.46, C:0.09, G:0.04, T:0.41
Consensus pattern (36 bp):
AAATGTTTTAAAAACATATAATATATAAATTTTTCA
Found at i:15031 original size:11 final size:11
Alignment explanation
Indices: 15015--15051 Score: 65
Period size: 11 Copynumber: 3.3 Consensus size: 11
15005 TATAATATAT
15015 AAATGTTTTCA
1 AAATGTTTTCA
15026 AAATGTTTTCAA
1 AAATGTTTTC-A
15038 AAATGTTTTCA
1 AAATGTTTTCA
15049 AAA
1 AAA
15052 ATTATATATA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
11 14 0.56
12 11 0.44
ACGTcount: A:0.43, C:0.08, G:0.08, T:0.41
Consensus pattern (11 bp):
AAATGTTTTCA
Found at i:15042 original size:12 final size:12
Alignment explanation
Indices: 15015--15053 Score: 71
Period size: 12 Copynumber: 3.3 Consensus size: 12
15005 TATAATATAT
15015 AAATGTTTTC-A
1 AAATGTTTTCAA
15026 AAATGTTTTCAA
1 AAATGTTTTCAA
15038 AAATGTTTTCAA
1 AAATGTTTTCAA
15050 AAAT
1 AAAT
15054 TATATATATA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 10 0.37
12 17 0.63
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.41
Consensus pattern (12 bp):
AAATGTTTTCAA
Found at i:15115 original size:39 final size:42
Alignment explanation
Indices: 15052--15141 Score: 105
Period size: 41 Copynumber: 2.2 Consensus size: 42
15042 GTTTTCAAAA
* *
15052 ATTATATATATAAGTTTTCAAAATG-ATTTTAAAAATTATAT
1 ATTATATATATAAGTTTTCAAAATGTATTTTAAAAACTATAC
** *
15093 ATTATATATAT-A-TTTTTTAAATGTTTTTTTAAAAACTATAC
1 ATTATATATATAAGTTTTCAAAATG-TATTTTAAAAACTATAC
15134 ATTATATA
1 ATTATATA
15142 GTTTTAAAAA
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
39 9 0.21
40 1 0.02
41 32 0.76
ACGTcount: A:0.43, C:0.03, G:0.03, T:0.50
Consensus pattern (42 bp):
ATTATATATATAAGTTTTCAAAATGTATTTTAAAAACTATAC
Found at i:15115 original size:85 final size:82
Alignment explanation
Indices: 14945--15119 Score: 226
Period size: 85 Copynumber: 2.1 Consensus size: 82
14935 ATAATATACG
* *
14945 AATGTTTTCAACATGTTTTCAAAAATATTATATAATTTTTCAAAAACGTTTTAAAAACTATATAA
1 AATGTTTTCAAAATGTTTTCAAAAATATTATATAAGTTTTCAAAAACGTTTTAAAAACTATATAA
*
15010 TATATAAATGTTTTCAA
66 TATATAAATATTTTCAA
* *
15027 AATGTTTTCAAAAATGTTTTCAAAAATTATATATATAAGTTTTC-AAAATGATTTTAAAAATTAT
1 AATGTTTTC-AAAATGTTTTCAAAAA-TAT-TATATAAGTTTTCAAAAACG-TTTTAAAAACTAT
* * **
15091 ATATTATATATATATTTTTTA
62 ATAATATATAAATATTTTCAA
15112 AATGTTTT
1 AATGTTTT
15120 TTTAAAAACT
Statistics
Matches: 80, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
82 9 0.11
83 15 0.19
84 8 0.10
85 48 0.60
ACGTcount: A:0.43, C:0.06, G:0.05, T:0.46
Consensus pattern (82 bp):
AATGTTTTCAAAATGTTTTCAAAAATATTATATAAGTTTTCAAAAACGTTTTAAAAACTATATAA
TATATAAATATTTTCAA
Found at i:15869 original size:21 final size:20
Alignment explanation
Indices: 15814--15869 Score: 51
Period size: 21 Copynumber: 2.8 Consensus size: 20
15804 TTAATCATAA
15814 AATAAA-AATTAATAATATTT
1 AATAAACAA-TAATAATATTT
* *
15834 AATCAACAATTATAATATTTT
1 AATAAACAATAATAATA-TTT
* *
15855 ATTAAATAATAATAA
1 AATAAACAATAATAA
15870 CAACGTCACT
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
20 12 0.43
21 16 0.57
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.39
Consensus pattern (20 bp):
AATAAACAATAATAATATTT
Found at i:16232 original size:20 final size:20
Alignment explanation
Indices: 16195--16275 Score: 96
Period size: 20 Copynumber: 4.2 Consensus size: 20
16185 CGAACATATA
*
16195 TTCTCTTCT-TCTTCTTTCT
1 TTCTCTTTTCTCTTCTTTCT
*
16214 TTCTCTTTTCTCTTATTTCT
1 TTCTCTTTTCTCTTCTTTCT
*
16234 TCCTCTTTTCTCTTCTTTC-
1 TTCTCTTTTCTCTTCTTTCT
*
16253 TTCTCTTCTCCTCTTCTTT-T
1 TTCTCTT-TTCTCTTCTTTCT
16273 TTC
1 TTC
16276 ACTTCCGTTG
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
19 14 0.26
20 39 0.74
ACGTcount: A:0.01, C:0.32, G:0.00, T:0.67
Consensus pattern (20 bp):
TTCTCTTTTCTCTTCTTTCT
Found at i:16241 original size:30 final size:32
Alignment explanation
Indices: 16200--16259 Score: 81
Period size: 32 Copynumber: 1.9 Consensus size: 32
16190 ATATATTCTC
*
16200 TTCTTCTTC-TTTCT-TTCTCTT-TTCTCTTAT
1 TTCTTCCTCTTTTCTCTTCT-TTCTTCTCTTAT
16230 TTCTTCCTCTTTTCTCTTCTTTCTTCTCTT
1 TTCTTCCTCTTTTCTCTTCTTTCTTCTCTT
16260 CTCCTCTTCT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
30 8 0.31
31 7 0.27
32 11 0.42
ACGTcount: A:0.02, C:0.30, G:0.00, T:0.68
Consensus pattern (32 bp):
TTCTTCCTCTTTTCTCTTCTTTCTTCTCTTAT
Found at i:16254 original size:27 final size:27
Alignment explanation
Indices: 16213--16267 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 27
16203 TTCTTCTTTC
16213 TTTCTCTTTTCTCTTAT-TTCTTCCTCT
1 TTTCTCTTTTCTCTTATCTTC-TCCTCT
*
16240 TTTCTCTTCTT-TCTTCTCTTCTCCTCT
1 TTTCTCTT-TTCTCTTATCTTCTCCTCT
16267 T
1 T
16268 CTTTTTTCAC
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
27 20 0.80
28 5 0.20
ACGTcount: A:0.02, C:0.33, G:0.00, T:0.65
Consensus pattern (27 bp):
TTTCTCTTTTCTCTTATCTTCTCCTCT
Found at i:29875 original size:29 final size:29
Alignment explanation
Indices: 29840--29897 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
29830 AACATTTTTG
*
29840 AAACTTGC-ATTTAGGTCCCCCAACATTTA
1 AAACTTGCAATATA-GTCCCCCAACATTTA
29869 AAACTTGCAATATAGTCCCCCAACATTTA
1 AAACTTGCAATATAGTCCCCCAACATTTA
29898 TTCCGTTTGC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
29 23 0.85
30 4 0.15
ACGTcount: A:0.34, C:0.28, G:0.09, T:0.29
Consensus pattern (29 bp):
AAACTTGCAATATAGTCCCCCAACATTTA
Found at i:30075 original size:35 final size:35
Alignment explanation
Indices: 30028--30113 Score: 100
Period size: 35 Copynumber: 2.5 Consensus size: 35
30018 AAAACAGTCA
* * *
30028 TCAATTTCATTCTAAACCCCAATTTCCAAAGTAAT
1 TCAATTTAATTCTAAACCCCAAATTCCAAAATAAT
* * * *
30063 TCAATTTTATTCTAAACCCTAAATTCTAAAATACT
1 TCAATTTAATTCTAAACCCCAAATTCCAAAATAAT
*
30098 TCAATTAAATTCTAAA
1 TCAATTTAATTCTAAA
30114 ATACTTCAAT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
35 43 1.00
ACGTcount: A:0.41, C:0.21, G:0.01, T:0.37
Consensus pattern (35 bp):
TCAATTTAATTCTAAACCCCAAATTCCAAAATAAT
Found at i:30107 original size:21 final size:21
Alignment explanation
Indices: 30082--30124 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
30072 TTCTAAACCC
30082 TAAATTCTAAAATACTTCAAT
1 TAAATTCTAAAATACTTCAAT
30103 TAAATTCTAAAATACTTCAAT
1 TAAATTCTAAAATACTTCAAT
30124 T
1 T
30125 TAAGGTAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.47, C:0.14, G:0.00, T:0.40
Consensus pattern (21 bp):
TAAATTCTAAAATACTTCAAT
Found at i:30937 original size:130 final size:129
Alignment explanation
Indices: 30735--30981 Score: 422
Period size: 130 Copynumber: 1.9 Consensus size: 129
30725 AATTTTCTTC
* * *
30735 TAATTAGGAGGTGACATGTGTCACCAATACACATATCATGATCATGTGTTAACACATGTCAGATC
1 TAATTAGGAGGTAACACGTGTCACCAATACACATATCATGATCATGTGCTAACACATGTCAGATC
*
30800 CTGATTAAATGATTAATTTATTAAATTTTATTTAATTTAGGACCAAATTGATAGCATATATAAA
66 CTAATTAAATGATTAATTTATTAAATTTTATTTAATTTAGGACCAAATTGATAGCATATATAAA
* * *
30864 TAATTAGGTGGTAACACGTGTCACCAATGACACGTGTCATGATCATGTGCTAACACATGTCAGAT
1 TAATTAGGAGGTAACACGTGTCACCAAT-ACACATATCATGATCATGTGCTAACACATGTCAGAT
30929 CCTAATTAAATGATTAATTTATTAAATTTTATTTAATTTAGGACCAAATTGAT
65 CCTAATTAAATGATTAATTTATTAAATTTTATTTAATTTAGGACCAAATTGAT
30982 TATATAAATA
Statistics
Matches: 110, Mismatches: 7, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
129 25 0.23
130 85 0.77
ACGTcount: A:0.36, C:0.13, G:0.15, T:0.36
Consensus pattern (129 bp):
TAATTAGGAGGTAACACGTGTCACCAATACACATATCATGATCATGTGCTAACACATGTCAGATC
CTAATTAAATGATTAATTTATTAAATTTTATTTAATTTAGGACCAAATTGATAGCATATATAAA
Found at i:33384 original size:22 final size:21
Alignment explanation
Indices: 33342--33384 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 21
33332 TATATGCCTA
*
33342 TGTGAGATAAATATGAGAATG
1 TGTGAGATAAATATGAAAATG
33363 TGTGA-ATAACATAATGAAAATG
1 TGTGAGATAA-AT-ATGAAAATG
33385 CCTATGTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 4 0.21
21 7 0.37
22 8 0.42
ACGTcount: A:0.47, C:0.02, G:0.23, T:0.28
Consensus pattern (21 bp):
TGTGAGATAAATATGAAAATG
Found at i:36760 original size:24 final size:23
Alignment explanation
Indices: 36678--36761 Score: 66
Period size: 24 Copynumber: 3.7 Consensus size: 23
36668 AAAACCTGAC
36678 GGATGCATCGATGCACATTCAAG
1 GGATGCATCGATGCACATTCAAG
* * *
36701 GGCGTGCATCGGTG--CA-TCAAC
1 GG-ATGCATCGATGCACATTCAAG
* * *
36722 TGATGTACCGATGCACATTCAAAG
1 GGATGCATCGATGCACATTC-AAG
*
36746 GGATGCATCGGTGCAC
1 GGATGCATCGATGCAC
36762 TGTTAAGTGT
Statistics
Matches: 43, Mismatches: 13, Indels: 9
0.66 0.20 0.14
Matches are distributed among these distances:
20 7 0.16
21 5 0.12
22 4 0.09
23 4 0.09
24 23 0.53
ACGTcount: A:0.26, C:0.24, G:0.29, T:0.21
Consensus pattern (23 bp):
GGATGCATCGATGCACATTCAAG
Found at i:39909 original size:18 final size:18
Alignment explanation
Indices: 39882--39935 Score: 90
Period size: 18 Copynumber: 3.0 Consensus size: 18
39872 TGACCGGTCA
39882 CGACCCGTTTACCCGACC
1 CGACCCGTTTACCCGACC
*
39900 CGACCAGTTTACCCGACC
1 CGACCCGTTTACCCGACC
*
39918 CGACCCGTTGACCCGACC
1 CGACCCGTTTACCCGACC
39936 GTTGACCCGA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 33 1.00
ACGTcount: A:0.19, C:0.48, G:0.19, T:0.15
Consensus pattern (18 bp):
CGACCCGTTTACCCGACC
Found at i:39939 original size:12 final size:13
Alignment explanation
Indices: 39914--39955 Score: 77
Period size: 13 Copynumber: 3.3 Consensus size: 13
39904 CAGTTTACCC
39914 GACCCGACCCGTT
1 GACCCGACCCGTT
39927 GACCCGA-CCGTT
1 GACCCGACCCGTT
39939 GACCCGACCCGTT
1 GACCCGACCCGTT
39952 GACC
1 GACC
39956 GTTGACCGGT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
12 12 0.43
13 16 0.57
ACGTcount: A:0.17, C:0.45, G:0.24, T:0.14
Consensus pattern (13 bp):
GACCCGACCCGTT
Found at i:47138 original size:18 final size:18
Alignment explanation
Indices: 47111--47160 Score: 91
Period size: 18 Copynumber: 2.8 Consensus size: 18
47101 TGACCGGTCA
47111 CGACCCGTTTACCCGACC
1 CGACCCGTTTACCCGACC
*
47129 CGACCAGTTTACCCGACC
1 CGACCCGTTTACCCGACC
47147 CGACCCGTTTACCC
1 CGACCCGTTTACCC
47161 AACCGTTGAC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.18, C:0.48, G:0.16, T:0.18
Consensus pattern (18 bp):
CGACCCGTTTACCCGACC
Found at i:47160 original size:13 final size:13
Alignment explanation
Indices: 47143--47184 Score: 59
Period size: 13 Copynumber: 3.3 Consensus size: 13
47133 CAGTTTACCC
47143 GACCCGACCCGTT
1 GACCCGACCCGTT
* *
47156 TACCC-AACCGTT
1 GACCCGACCCGTT
47168 GACCCGACCCGTT
1 GACCCGACCCGTT
47181 GACC
1 GACC
47185 GTTGACCGTT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
12 10 0.42
13 14 0.58
ACGTcount: A:0.19, C:0.45, G:0.19, T:0.17
Consensus pattern (13 bp):
GACCCGACCCGTT
Found at i:47323 original size:29 final size:29
Alignment explanation
Indices: 47199--47324 Score: 103
Period size: 29 Copynumber: 4.3 Consensus size: 29
47189 ACCGTTGACC
* ****
47199 GGTGCTATTCTGGGAATTAATTCGGTTTT
1 GGTGCTATTTTGGGAATTAATTCGAAAAT
*
47228 GGTGCTATTCTGGGAATTAATTCG-AAAT
1 GGTGCTATTTTGGGAATTAATTCGAAAAT
* * * *
47256 GGGTGCTATTTTAGTAATT-TTTCGAAAAAA
1 -GGTGCTATTTTGGGAATTAATTCG-AAAAT
** *
47286 AATGATATTTTGGGAATTAATTCGAAAAT
1 GGTGCTATTTTGGGAATTAATTCGAAAAT
47315 GGTGCTATTT
1 GGTGCTATTT
47325 GTGTAAAATG
Statistics
Matches: 75, Mismatches: 18, Indels: 8
0.74 0.18 0.08
Matches are distributed among these distances:
28 5 0.07
29 63 0.84
30 7 0.09
ACGTcount: A:0.29, C:0.08, G:0.23, T:0.40
Consensus pattern (29 bp):
GGTGCTATTTTGGGAATTAATTCGAAAAT
Found at i:51950 original size:26 final size:26
Alignment explanation
Indices: 51919--51984 Score: 123
Period size: 26 Copynumber: 2.5 Consensus size: 26
51909 GTATGGTCTT
51919 GTGCATCGATGCATCAAATACACTGA
1 GTGCATCGATGCATCAAATACACTGA
*
51945 GTGCATCGATGCATCAAATGCACTGA
1 GTGCATCGATGCATCAAATACACTGA
51971 GTGCATCGATGCAT
1 GTGCATCGATGCAT
51985 GGTATGTGCA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.24
Consensus pattern (26 bp):
GTGCATCGATGCATCAAATACACTGA
Found at i:53484 original size:20 final size:21
Alignment explanation
Indices: 53440--53490 Score: 56
Period size: 20 Copynumber: 2.6 Consensus size: 21
53430 TGAAACTAAA
53440 TATTGTAG--TAGAATATGTG
1 TATTGTAGAATAGAATATGTG
53459 TATTGTA-AATAGAATATG-G
1 TATTGTAGAATAGAATATGTG
*
53478 ATTTTGTAGAATA
1 -TATTGTAGAATA
53491 ATAAGATTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
19 8 0.30
20 15 0.56
21 4 0.15
ACGTcount: A:0.37, C:0.00, G:0.22, T:0.41
Consensus pattern (21 bp):
TATTGTAGAATAGAATATGTG
Found at i:59871 original size:3 final size:3
Alignment explanation
Indices: 59863--59907 Score: 81
Period size: 3 Copynumber: 14.7 Consensus size: 3
59853 TCACAAATAC
59863 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TT
59908 CAAATAGTGG
Statistics
Matches: 41, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 38 0.93
4 3 0.07
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:61011 original size:13 final size:13
Alignment explanation
Indices: 60967--61030 Score: 60
Period size: 13 Copynumber: 4.8 Consensus size: 13
60957 TCTACACAAT
60967 ATAAAGAAA-GAA
1 ATAAAGAAATGAA
* **
60979 ATGATTAAATGGAA
1 ATAAAGAAAT-GAA
60993 AT-AAGAAATGAA
1 ATAAAGAAATGAA
61005 ATAAAGAAATGAA
1 ATAAAGAAATGAA
61018 ATGGAAAGAAATG
1 AT--AAAGAAATG
61031 CTATCAAAGG
Statistics
Matches: 42, Mismatches: 5, Indels: 7
0.78 0.09 0.13
Matches are distributed among these distances:
12 11 0.26
13 17 0.40
14 5 0.12
15 9 0.21
ACGTcount: A:0.62, C:0.00, G:0.20, T:0.17
Consensus pattern (13 bp):
ATAAAGAAATGAA
Found at i:61586 original size:19 final size:20
Alignment explanation
Indices: 61547--61598 Score: 79
Period size: 19 Copynumber: 2.6 Consensus size: 20
61537 GAAACCCCTT
61547 TGAAAATACATGATTTTTTAA
1 TGAAAATACATGA-TTTTTAA
61568 TGAAAATACATGA-TTTTAA
1 TGAAAATACATGATTTTTAA
*
61587 TGAAGATACATG
1 TGAAAATACATG
61599 CTCTTGGCCG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
19 17 0.57
21 13 0.43
ACGTcount: A:0.44, C:0.06, G:0.13, T:0.37
Consensus pattern (20 bp):
TGAAAATACATGATTTTTAA
Done.