Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000528.1 Hibiscus syriacus cultivar Beakdansim tig00001012_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73520

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37--75
13
2.8
14
84
11
53
51
0
0
48
1.00
2036--2077
21
2.0
21
81
9
50
52
0
9
38
1.34
8123--8199
32
2.4
32
84
0
100
16
25
27
29
1.97
14499--14634
37
3.7
36
81
5
148
28
19
14
36
1.92
14499--14626
36
3.5
36
79
6
141
30
19
15
34
1.93
15149--15195
3
15.3
3
95
4
85
31
0
0
68
0.90
15140--15195
19
3.0
19
94
2
96
33
0
0
66
0.92
16524--16608
30
2.8
30
87
0
134
18
11
10
58
1.61
25207--25232
11
2.4
11
100
0
52
53
11
0
34
1.37
25670--25751
40
2.0
40
95
4
148
32
26
15
24
1.95
32240--32291
24
2.1
26
85
7
72
15
11
17
55
1.68
32553--32605
24
2.2
24
93
0
88
5
9
22
62
1.47
32674--32706
16
2.1
16
100
0
66
6
12
24
57
1.57
32809--33087
12
23.5
12
69
22
123
38
2
5
53
1.36
32809--33085
19
14.2
20
70
21
107
38
2
5
53
1.36
32813--33074
24
10.6
24
72
20
152
38
2
5
53
1.36
32809--33106
5
60.2
5
69
19
137
37
2
5
54
1.35
32809--33066
63
4.3
63
73
21
175
38
1
5
53
1.35
32803--33085
7
38.1
7
71
19
125
38
2
5
53
1.37
33033--33104
21
3.5
21
82
14
80
34
2
1
61
1.19
46174--46470
5
60.4
5
68
21
143
39
1
5
54
1.31
46146--46222
22
3.3
22
79
13
82
38
1
6
53
1.35
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46149--46457
18
16.7
17
69
19
124
38
1
5
54
1.32
46149--46477
17
18.6
17
70
21
107
37
1
5
55
1.32
48486--48547
32
1.9
32
83
0
79
32
11
16
40
1.83
48777--48813
19
2.0
19
89
5
58
37
2
0
59
1.12
49273--49311
16
2.4
16
86
0
51
23
5
15
56
1.59
49723--49768
24
1.9
24
86
0
65
26
13
28
32
1.93
59230--59274
23
2.0
23
86
8
65
33
26
20
20
1.97
59236--59284
23
2.2
23
88
3
73
34
24
20
20
1.96
59501--59560
31
2.0
30
83
9
77
36
23
3
36
1.71
60543--60567
10
2.5
10
100
0
50
72
0
28
0
0.86
66095--66162
23
3.0
23
80
0
73
29
22
23
25
1.99

Tables:   1

The End!