genome.fa.s5280.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005280.1 Hibiscus syriacus cultivar Beakdansim tig00011942_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58891

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
292--331	21	1.9	21	84	0	53	32	32	15	20	1.93
5137--5161	2	12.5	2	100	0	50	52	0	0	48	1.00
5963--6031	30	2.2	30	85	15	95	34	5	17	42	1.73
5972--6031	30	2.0	30	93	6	104	33	6	16	43	1.74
6113--6232	8	17.0	8	67	25	58	26	33	15	25	1.95
6113--6325	20	10.7	20	77	14	149	25	30	16	26	1.97
6184--6228	12	4.0	12	75	24	53	31	28	15	24	1.96
6681--6750	34	2.1	32	89	5	104	31	15	31	21	1.95
9517--9574	30	2.0	30	93	3	100	32	6	17	43	1.75
9658--9757	8	14.0	8	67	24	55	25	34	16	25	1.95
9658--9756	21	4.7	21	83	12	123	24	34	16	25	1.95
9686--9753	13	5.0	13	70	19	50	27	30	16	25	1.96
9658--9830	20	8.8	20	75	14	110	26	31	16	26	1.97
12816--13065	130	1.9	129	91	0	410	39	9	8	42	1.69
14527--14602	21	3.7	21	68	10	57	34	21	10	34	1.87
14648--14712	20	3.3	20	69	14	55	27	24	12	35	1.91
14605--14711	40	2.7	40	78	9	112	28	23	11	36	1.89
15619--15672	24	2.2	24	86	0	72	20	18	22	38	1.93
18228--18290	20	3.2	20	82	8	74	46	20	17	15	1.85
19829--19903	21	3.6	21	83	7	91	21	17	37	24	1.94
20048--20089	4	10.5	4	84	0	57	69	2	2	26	1.13
20291--20337	21	2.2	21	85	7	60	34	34	14	17	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21268--21346	20	4.1	20	80	6	108	26	29	21	22	1.99
21269--21343	38	2.0	38	89	0	114	26	30	21	21	1.98
26557--26728	31	5.5	31	75	14	140	32	18	17	31	1.94
26554--26719	63	2.7	63	93	0	271	34	18	16	30	1.93
30905--31085	32	5.8	32	76	18	175	33	18	17	31	1.94
30885--31141	31	8.2	31	76	10	238	31	19	17	31	1.95
30885--31113	63	3.7	63	95	0	397	32	18	17	31	1.94
35298--35478	32	5.7	31	76	13	190	33	18	17	30	1.94
35278--35506	63	3.7	63	94	0	388	32	17	17	31	1.94
35278--35534	31	8.2	31	75	14	233	31	18	18	31	1.95
37789--37881	18	4.9	18	77	10	87	29	30	19	21	1.97
37787--37881	38	2.5	38	77	6	120	28	29	18	23	1.98
39996--40020	13	1.9	13	100	0	50	60	0	40	0	0.97
40314--40412	42	2.4	42	91	0	153	20	18	33	28	1.96
41877--41960	20	4.2	20	84	6	107	50	19	14	16	1.79
42278--42321	22	2.0	22	90	0	70	6	15	22	54	1.65
42506--42548	19	2.2	20	87	4	61	41	20	20	16	1.90
47542--47623	29	2.8	29	84	0	101	18	40	29	12	1.87
47838--47895	28	2.0	28	86	3	80	8	34	34	22	1.85
47852--47925	28	2.6	29	84	2	96	14	25	40	18	1.89
49188--49247	23	2.6	23	86	0	84	23	21	15	40	1.91
49639--49701	27	2.4	27	76	10	67	36	1	14	47	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49849--49900	22	2.3	23	90	6	81	28	0	17	53	1.44
50084--50161	30	2.6	29	84	15	97	43	2	8	44	1.49
50105--50185	22	3.3	22	71	23	72	44	1	12	41	1.50
52496--52631	59	2.3	59	75	17	147	48	7	4	39	1.51
52695--52907	14	16.2	13	64	27	69	44	8	0	46	1.38
52693--53032	11	28.3	11	69	20	132	44	8	0	46	1.39
52757--52849	3	31.7	3	73	8	66	38	6	1	53	1.34
52718--52848	23	5.4	23	83	8	145	41	7	0	49	1.36
52848--52971	19	6.6	19	71	15	71	46	12	1	39	1.51
52796--53025	93	2.4	95	86	7	326	44	8	1	45	1.41
52974--53028	12	4.7	12	86	8	78	43	1	0	54	1.10
52996--53044	23	2.3	22	82	10	57	36	4	4	55	1.38
52704--53036	24	14.0	23	72	17	107	44	8	0	46	1.39
53205--53239	17	2.0	18	94	5	63	37	5	0	57	1.23
53237--53464	93	2.4	96	91	5	369	46	11	0	42	1.41
53237--53464	48	4.8	49	91	5	357	46	11	0	42	1.41
56369--56429	14	4.5	14	73	8	63	44	1	6	47	1.39
56660--56716	18	3.4	17	77	15	64	47	10	0	42	1.38
57108--57222	50	2.4	49	79	16	136	50	8	0	40	1.33
57181--57244	28	2.2	31	91	8	107	57	12	0	29	1.35
57220--57269	22	2.3	21	82	6	64	54	16	0	30	1.42
57185--57251	28	2.4	28	85	12	100	56	11	0	31	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57805--57860	29	1.9	29	100	0	112	17	28	39	14	1.89

Tables:   1

The End!