Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005281.1 Hibiscus syriacus cultivar Beakdansim tig00011943_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76490

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1074--1121
16
2.9
16
87
6
60
72
0
0
27
0.84
3123--3472
59
5.9
59
91
1
542
32
22
11
34
1.90
3737--3783
19
2.5
19
96
0
85
34
25
4
36
1.76
3805--3862
22
2.7
22
79
10
59
25
22
17
34
1.96
3809--3984
95
1.9
94
80
11
207
28
23
15
31
1.96
10069--10415
59
5.9
59
90
0
525
31
22
12
33
1.91
10735--10817
21
4.0
20
80
13
89
24
28
15
31
1.96
10852--10908
20
2.7
21
89
5
80
26
29
15
28
1.96
11910--11969
21
2.8
22
78
14
79
28
16
18
36
1.93
22958--23002
19
2.4
18
77
3
54
57
11
0
31
1.33
26937--26990
21
2.7
19
81
13
63
68
5
12
12
1.37
26937--26990
20
2.7
21
85
5
67
68
5
12
12
1.37
37029--37072
2
22.0
2
100
0
88
50
0
0
50
1.00
39843--39882
18
2.2
18
100
0
80
25
10
22
42
1.84
41066--41373
43
7.2
43
71
5
140
26
19
23
30
1.98
41782--41828
21
2.2
21
88
0
67
2
34
19
44
1.62
41830--41888
21
2.8
21
78
0
64
0
40
20
38
1.53
51183--51349
41
4.1
41
87
3
221
30
19
14
35
1.92
51192--51368
82
2.1
82
86
5
250
32
20
15
32
1.93
53421--53456
18
2.0
18
100
0
72
38
44
5
11
1.63
53478--53507
3
10.0
3
92
0
51
63
0
3
33
1.11
59774--59834
32
1.9
32
90
6
97
31
16
22
29
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61819--61867
14
3.5
14
78
10
55
44
2
2
51
1.24
61875--61954
22
3.5
22
79
8
90
40
1
10
48
1.45
61859--62053
84
2.3
83
79
13
195
38
2
8
50
1.45
61989--62028
21
1.9
21
84
0
53
40
2
12
45
1.56
62058--62115
24
2.4
25
80
8
66
10
10
1
77
1.06
62065--62115
24
2.2
24
85
3
68
11
9
1
76
1.10
62048--62121
30
2.5
30
79
12
82
9
10
1
78
1.03
64183--64229
20
2.3
20
96
0
85
53
23
17
6
1.66
67904--67942
18
2.2
18
85
0
51
43
2
17
35
1.63
75312--75349
14
2.7
14
80
15
51
50
0
5
44
1.24
75343--75542
26
8.2
26
78
17
161
45
2
7
45
1.45
75395--75529
22
5.9
21
70
25
87
43
2
8
45
1.48
75343--75545
96
2.1
94
83
8
241
44
2
7
45
1.45
75577--75637
17
3.6
17
78
10
63
16
6
0
77
0.98
75558--75637
6
13.5
6
68
21
53
16
7
0
76
1.00
75578--75638
28
2.2
28
93
0
104
18
6
0
75
1.01

Tables:   1

The End!