Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005282.1 Hibiscus syriacus cultivar Beakdansim tig00011945_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  98047

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3330--3558
63
3.7
63
92
2
372
32
17
17
31
1.94
3336--3583
31
7.9
31
74
13
213
31
18
18
31
1.95
5812--5904
18
4.9
18
77
10
87
29
30
19
21
1.97
5810--5904
38
2.5
38
77
6
120
28
29
18
23
1.98
6482--6537
21
2.5
23
80
11
55
32
17
3
46
1.66
8310--8408
42
2.4
42
91
0
153
20
18
33
28
1.96
9867--9949
20
4.2
20
85
3
105
49
19
14
16
1.80
9866--9952
39
2.2
39
83
0
111
47
20
14
17
1.83
15501--15582
29
2.8
29
84
0
101
18
40
29
12
1.87
15797--15883
29
3.0
29
84
1
104
11
29
37
20
1.88
17142--17201
23
2.6
23
86
0
84
23
21
15
40
1.91
17595--17659
27
2.3
29
76
10
73
35
1
15
47
1.55
17809--17860
22
2.3
23
90
6
81
28
0
17
53
1.44
18049--18126
30
2.6
29
84
15
97
43
2
8
44
1.49
18070--18150
22
3.3
22
71
23
72
44
1
12
41
1.50
17513--18101
320
1.8
318
83
8
775
40
1
11
46
1.50
20466--20601
59
2.3
59
75
17
147
48
7
4
39
1.51
20728--20822
3
32.7
3
75
6
70
38
6
1
53
1.33
20664--20930
26
10.6
26
78
11
225
43
8
1
46
1.41
20689--20821
23
5.4
23
80
12
131
42
7
0
49
1.36
20681--21015
26
13.7
23
72
18
134
43
8
0
47
1.39
20767--21003
98
2.5
97
85
10
342
44
8
1
46
1.41
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20952--21006
12
4.7
12
86
8
78
43
1
0
54
1.10
21185--21219
17
2.0
18
94
5
63
37
5
0
57
1.23
21217--21453
49
4.8
49
96
0
438
45
11
0
42
1.44
24843--24883
22
1.9
21
85
5
55
2
29
2
65
1.18
25139--25253
50
2.4
49
79
16
136
50
8
0
40
1.33
25212--25274
28
2.2
30
94
5
112
57
12
0
30
1.36
25216--25281
28
2.4
28
87
10
107
56
12
0
31
1.36
25251--25299
21
2.3
21
85
3
71
53
16
0
30
1.43
25852--25907
29
1.9
29
100
0
112
17
28
39
14
1.89
34684--34721
12
2.8
13
88
11
51
36
7
0
55
1.29
34992--35073
23
3.6
23
85
3
103
32
25
21
19
1.97
39326--39366
21
1.9
22
90
5
66
75
0
4
19
0.98
39993--40055
19
3.2
19
75
4
54
55
12
0
31
1.37
40013--40177
77
2.2
75
87
4
233
56
10
3
29
1.49
41896--41934
11
3.7
10
83
10
51
84
5
2
7
0.84
41898--41937
10
3.6
11
83
9
55
82
5
2
10
0.91
41899--41945
23
2.1
21
88
7
67
78
6
4
10
1.06
45835--45868
15
2.3
15
100
0
68
5
26
23
44
1.76
47616--47662
21
2.2
22
88
3
69
74
0
4
21
0.99
48252--48451
66
2.9
68
79
13
230
57
12
1
29
1.43
48305--48350
19
2.4
19
85
3
56
47
13
0
39
1.42
48298--48471
75
2.3
76
87
4
237
56
10
2
30
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50458--50569
56
2.0
56
100
0
224
33
10
19
35
1.87
51679--51895
51
4.3
51
76
7
226
49
13
10
26
1.74
51679--51909
101
2.3
102
83
5
272
48
12
10
27
1.75
52241--52277
17
2.2
18
85
9
51
43
5
2
48
1.40
56808--56879
31
2.4
31
83
4
94
43
6
23
26
1.79
68734--68759
12
2.2
12
100
0
52
19
15
23
42
1.89
76605--76683
38
2.1
39
97
2
151
29
27
20
22
1.98
78992--79033
16
2.6
16
92
7
68
19
16
38
26
1.92
82430--82484
28
2.0
28
86
6
78
43
3
5
47
1.44
85501--85529
10
2.9
10
100
0
58
27
10
0
62
1.28
85735--85883
63
2.3
64
81
10
171
28
0
15
55
1.45
86022--86344
161
2.0
161
95
0
574
28
16
17
37
1.91
87132--87181
25
2.0
25
96
0
91
30
16
26
28
1.96

Tables:   1

The End!