Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005285.1 Hibiscus syriacus cultivar Beakdansim tig00011957_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45995

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1334--1397
30
2.2
30
88
2
94
51
7
1
39
1.40
1428--1518
35
2.7
35
83
11
102
41
7
4
46
1.52
2529--2560
16
2.0
16
93
0
55
37
6
9
46
1.61
4490--4527
12
2.8
13
88
11
51
36
7
0
55
1.29
4664--4690
2
13.5
2
100
0
54
51
0
0
48
1.00
4797--4857
23
2.7
23
89
0
95
24
27
26
21
1.99
5555--5587
15
2.4
14
90
10
50
39
18
0
42
1.50
6480--6517
20
1.9
20
94
0
67
26
23
23
26
2.00
9828--9887
2
30.0
2
100
0
120
50
0
0
50
1.00
9991--10049
23
2.6
23
83
0
73
30
30
20
18
1.96
12757--12873
16
7.2
16
75
13
96
64
14
4
16
1.43
12759--12876
32
3.6
33
79
5
132
64
15
4
16
1.44
13541--13702
26
6.0
26
78
9
148
44
12
13
29
1.81
13590--13687
13
7.5
13
75
8
92
45
13
13
27
1.80
15650--15747
15
6.5
15
68
13
67
16
15
19
48
1.80
15594--15726
30
4.4
30
94
0
212
15
15
21
47
1.82
15594--15747
30
5.1
31
90
3
167
15
15
21
47
1.82
16334--16375
15
2.6
17
81
14
61
40
16
9
33
1.81
16425--16532
17
6.4
18
70
18
63
52
11
0
35
1.43
16519--16547
15
1.9
15
100
0
58
55
17
0
27
1.42
17300--17371
28
2.5
29
84
8
85
34
8
26
30
1.86
26968--27012
20
2.2
21
88
4
65
51
2
0
46
1.13
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28130--28156
14
1.9
14
100
0
54
51
0
3
44
1.19
33332--33356
3
8.3
3
100
0
50
0
64
0
36
0.94
34928--34971
22
2.0
22
86
0
61
25
38
13
22
1.91
35230--35266
17
2.2
17
100
0
74
10
5
16
67
1.38
35474--35605
20
6.6
20
94
1
221
38
16
19
25
1.92
35470--35680
20
10.6
20
92
2
153
32
21
20
25
1.98
35498--35680
60
3.0
60
82
6
176
31
21
21
25
1.98
35574--35681
20
5.4
20
93
0
162
25
27
22
25
2.00
36261--36287
14
1.9
14
100
0
54
22
37
7
33
1.82
36503--36556
24
2.2
24
93
0
90
20
18
20
40
1.91
38791--38825
18
1.9
18
94
0
61
54
25
2
17
1.57
38885--39153
139
1.9
140
96
0
504
28
13
15
43
1.84
39124--39386
20
13.9
20
78
12
243
31
22
19
26
1.97
39285--39436
53
2.8
52
85
4
160
33
21
19
25
1.97
39429--39467
20
2.0
20
100
0
78
10
20
20
48
1.78
39425--39482
20
2.9
20
86
0
71
13
17
24
44
1.85
39586--39641
14
4.1
13
81
6
58
44
16
0
39
1.47
41030--41141
42
2.7
42
76
5
111
22
17
38
21
1.93
41638--41713
20
3.8
20
89
0
116
36
23
18
21
1.95
41756--41822
20
3.4
20
95
2
118
14
19
26
38
1.91
41969--42018
18
2.8
18
100
0
100
42
6
20
32
1.76
43723--43810
20
4.4
20
82
1
79
47
23
13
14
1.80

Tables:   1

The End!