Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005286.1 Hibiscus syriacus cultivar Beakdansim tig00011958_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 55622
ACGTcount: A:0.34, C:0.15, G:0.18, T:0.32
Found at i:2263 original size:59 final size:57
Alignment explanation
Indices: 2046--2291 Score: 254
Period size: 59 Copynumber: 4.3 Consensus size: 57
2036 TGATTCCCAG
* * *
2046 AGGGTACTTTGTGTACTAACATGAGAATAAATTCATACTAAGTGTATCG-ATTTTCGTAT
1 AGGGCACTTTGTGTGCTAACATGA-AAAAAATTCATACTAAGTGTAT-GAATTTT-GTAT
* * * * * *
2105 AGGGTACTTTGTGTGATAACATGAGAAAAATTCATATTAA--GTATGGATTTCGTAT
1 AGGGCACTTTGTGTGCTAACATGAAAAAAATTCATACTAAGTGTATGAATTTTGTAT
* *
2160 AGAGCACTTTGTGT--TAACATG--AGAAATTCATACTAAGTGTATGAATTTTGTAT
1 AGGGCACTTTGTGTGCTAACATGAAAAAAATTCATACTAAGTGTATGAATTTTGTAT
* *
2213 AGGGAACTTTCGTGTGCTAACATGATAAAAAACTCATACTAAGTGTATGAATTTCTGTAT
1 AGGGCACTTT-GTGTGCTAACATGA-AAAAAATTCATACTAAGTGTATGAATTT-TGTAT
* *
2273 TGGGCACCTTGTGTGCTAA
1 AGGGCACTTTGTGTGCTAA
2292 AATTATGAAA
Statistics
Matches: 158, Mismatches: 19, Indels: 20
0.80 0.10 0.10
Matches are distributed among these distances:
51 13 0.08
53 28 0.18
54 4 0.03
55 17 0.11
56 15 0.09
58 13 0.08
59 56 0.35
60 12 0.08
ACGTcount: A:0.33, C:0.11, G:0.20, T:0.36
Consensus pattern (57 bp):
AGGGCACTTTGTGTGCTAACATGAAAAAAATTCATACTAAGTGTATGAATTTTGTAT
Found at i:2910 original size:2 final size:2
Alignment explanation
Indices: 2903--2944 Score: 84
Period size: 2 Copynumber: 21.0 Consensus size: 2
2893 GCCTAACATC
2903 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2945 TATTGATCAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:6542 original size:20 final size:21
Alignment explanation
Indices: 6517--6558 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
6507 CAAATGAATT
6517 GGACTTT-TCATTCGACTATA
1 GGACTTTATCATTCGACTATA
6537 GGACTTTATCATTCGACTATA
1 GGACTTTATCATTCGACTATA
6558 G
1 G
6559 CTTGTACTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 7 0.33
21 14 0.67
ACGTcount: A:0.26, C:0.19, G:0.17, T:0.38
Consensus pattern (21 bp):
GGACTTTATCATTCGACTATA
Found at i:8603 original size:22 final size:21
Alignment explanation
Indices: 8559--8606 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 21
8549 CTTTCATGTC
* *
8559 TTTTTTTTTCGAACAGTTTTT
1 TTTTTTTTTCGAACAGCTATT
*
8580 TTTTCTTTTTCGAACTGCTATT
1 TTTT-TTTTTCGAACAGCTATT
8602 TTTTT
1 TTTTT
8607 CAACATTTTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 5 0.22
22 18 0.78
ACGTcount: A:0.12, C:0.12, G:0.08, T:0.67
Consensus pattern (21 bp):
TTTTTTTTTCGAACAGCTATT
Found at i:22652 original size:81 final size:81
Alignment explanation
Indices: 22517--23969 Score: 1750
Period size: 81 Copynumber: 18.0 Consensus size: 81
22507 ATTGTTTTAA
* * * *
22517 AGTAAAAGACTAAATACCTAGTTATGCATTTGGAAGAAAGGTGTGAATCATGCCAGTTAGATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAA
*
22582 AGGTTAAATATCTTTG
66 AGGTTAAATACCTTTG
* * * *
22598 AGTAAAAGATTAAATGCCTAGGTCTGCATTTGGCAGAAAGGTGCCAATCATGCCAGTTAGATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAA
* *
22663 AAGTTAAATACCTTTA
66 AGGTTAAATACCTTTG
* ** * * *
22679 ACTAAAAGACTAAATAACTAGGTGTGTATTTGGCAGAAAGGTGCCAATCATGCCAGTTAGATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAA
* *
22744 AGTTTAATTACCTTTG
66 AGGTTAAATACCTTTG
* *
22760 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGTTGTCAGTCATGCCAGTTAGATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAA
*
22825 AGGTTAAATACATTTG
66 AGGTTAAATACCTTTG
* * *
22841 AGTAAAAGACTAAATGACTAGTTGTGCATTTGGAAGAAAGGTGACAATCATG-CAGTTAGATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAA
22905 AGGTTAAATACCTTTG
66 AGGTTAAATACCTTTG
* * * **
22921 AGTAAAAGACTAAATGCCTAGTTGTACATTTGGCAAAAAGGTGGCAATCATGTTA-TCTAGATGA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGT-TAGATGA
22985 AAGGTTAAATACCTTTG
65 AAGGTTAAATACCTTTG
* * * *
23002 TGTAAAAGACTAAATGACTAGTTATGCATTTGGTAGAAAGGTGTCAATCATGCCAGTTAGATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAA
*
23067 AGGTTAAATATCTTTG
66 AGGTTAAATACCTTTG
* * * * * * * *
23083 AGTAAAAGACTCAATGTCTAGCTATGCGTTTGCCAAAAATGTGTCAATCATGCCAGTTAGATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAA
*
23148 ATGTTAAATACCTTTG
66 AGGTTAAATACCTTTG
* ** * * * * * ** *
23164 ATTAAAAGACTAAATGATTAGCTGTGCAATTAGCAAAAATGTACCAA-CAAAGCCAGTTAGATGA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATC-ATGCCAGTTAGATGA
23228 AAGGTTAAATACCTTTG
65 AAGGTTAAATACCTTTG
* * * * * ** * * *
23245 AGTAGAAGACTAAATACCTAGTTGTGCTTTTGGTA-ATATTTGTCAATTATTCCAGTTAGGTGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAA
* *
23309 ATGTTAAATTCCTTTG
66 AGGTTAAATACCTTTG
* ** * * * * *
23325 AGTAAAAGAATGTATGCCTAGCTGTGCGTTTAGCAGAAAAGTGTCAATCATGCTAGTTAGATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAA
23390 AGGTTAAATACCTTTG
66 AGGTTAAATACCTTTG
* ** * * * *
23406 AGTAAAAGACAAAATGTGTAGCTGTGAATTTGGCAGAAATGTGTCAATCTTGCCAGTTAGATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAA
23471 AGGTTAAATACCTTTG
66 AGGTTAAATACCTTTG
* * * * * * **
23487 AGTAAATGACTAATTGCCTAGCTGTGCATTTAGTAAAAAGGTGTCAATCATGAAAGTTAGATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAA
23552 AGGTTAAATACCTTTG
66 AGGTTAAATACCTTTG
* * * * *
23568 AGTAAAAGACTAAATGCCTAGGTGTGCATTTAGAATAAAGGTGTCAATCATTCCAGTTAGATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAA
23633 AGGTTAAATACCTTTG
66 AGGTTAAATACCTTTG
* * *
23649 AGTAAAAGACTAAATGCCTAGTTGTGTATTT-ACAGAAAGGTGACAATCATGCCAGTTAGATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAA
*
23713 AGGTTAAATACCATTG
66 AGGTTAAATACCTTTG
* * * * ** *
23729 AGTAAAAGGCTAAATTCCTAGTTGTGCATTTGGTAGAAATGTACCAATCATGTCAGTTAGATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAA
*
23794 AGGTTAAATATCTTTG
66 AGGTTAAATACCTTTG
* **
23810 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGG-ACGAAAGGTGACAATCATGAGAGTTAGATGA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCA-GAAAGGTGTCAATCATGCCAGTTAGATGA
23874 AA-GTTAAATACCTTTG
65 AAGGTTAAATACCTTTG
** * ** * * * *
23890 AGTAAAAGACTAAATGCCTAACTGTGCATTTAGCCTAAAGGGGCCAATAATGCAAGTTAGATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAA
*
23955 AGGTTAAATGCCTTT
66 AGGTTAAATACCTTT
23970 AAAGGTTAAA
Statistics
Matches: 1176, Mismatches: 186, Indels: 20
0.85 0.13 0.01
Matches are distributed among these distances:
80 276 0.23
81 899 0.76
82 1 0.00
ACGTcount: A:0.37, C:0.12, G:0.21, T:0.30
Consensus pattern (81 bp):
AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAA
AGGTTAAATACCTTTG
Found at i:23136 original size:323 final size:323
Alignment explanation
Indices: 22517--23969 Score: 1769
Period size: 323 Copynumber: 4.5 Consensus size: 323
22507 ATTGTTTTAA
* ** *
22517 AGTAAAAGACTAAAT-ACCTAGTTATGCATTTGGAAGAAAGGTGTGAATCATGCCAGTTAGATGA
1 AGTAAAAGACTAAATGA-CTAGTTGTGCATTTGGAAGAAAGGTGACAATCATGACAGTTAGATGA
* * * * *
22581 AAGGTTAAATATCTTTGAGTAAAAGATTAAATGCCTAGGTCTGCATTTGGCAGAAAGGTGCCAAT
65 AAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGGTGTGCATTTGG-AAAAAGGTGTCAAT
* * * * * * *
22646 CATGCCAGTTAGATGAAAAGTTAAATACCTTTAACTAAAAGACTAAATAACTAGGTGTGTATTTG
129 CATTCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGACTAGTTGTGCATTTG
* * *
22711 GCAGAAAGGTGCCAATCATGCCAGTTAGATGAAAGTTTAATTACCTTTGAGTAAAAGACTAAATG
194 GCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATG
* * * *
22776 CCTAGTTGTGCATTTGGCAGAAA-GTTGTCAGTCATGCCAGTTAGATGAAAGGTTAAATACATTT
259 TCTAGCTGTGCATTTGGCAGAAATG-TGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTT
22840 G
323 G
22841 AGTAAAAGACTAAATGACTAGTTGTGCATTTGGAAGAAAGGTGACAATCATG-CAGTTAGATGAA
1 AGTAAAAGACTAAATGACTAGTTGTGCATTTGGAAGAAAGGTGACAATCATGACAGTTAGATGAA
* * *
22905 AGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTACATTTGGCAAAAAGGTGGCAATC
66 AGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGGTGTGCATTTGG-AAAAAGGTGTCAATC
* * *
22970 ATGT-TA-TCTAGATGAAAGGTTAAATACCTTTGTGTAAAAGACTAAATGACTAGTTATGCATTT
130 AT-TCCAGT-TAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGACTAGTTGTGCATTT
* * *
23033 GGTAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATATCTTTGAGTAAAAGACTCAAT
193 GGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAAT
* * * * *
23098 GTCTAGCTATGCGTTTGCCAAAAATGTGTCAATCATGCCAGTTAGATGAAATGTTAAATACCTTT
258 GTCTAGCTGTGCATTTGGCAGAAATGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTT
23163 G
323 G
* * * * * * * *
23164 ATTAAAAGACTAAATGATTAGCTGTGCAATTAGCAA-AAATGT-ACCAA-CAAAGCCAGTTAGAT
1 AGTAAAAGACTAAATGACTAGTTGTGC-ATTTGGAAGAAAGGTGA-CAATC-ATGACAGTTAGAT
* * * * * * **
23226 GAAAGGTTAAATACCTTTGAGTAGAAGACTAAATACCTAGTTGTGCTTTTGGTAATATTTGTCAA
63 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGGTGTGCATTTGGAAAAAGGTGTCAA
* * * * * ** * * *
23291 TTATTCCAGTTAGGTGAAATGTTAAATTCCTTTGAGTAAAAGAATGTATGCCTAGCTGTGCGTTT
128 TCATTCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGACTAGTTGTGCATTT
* * * *
23356 AGCAGAAAAGTGTCAATCATGCTAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACAAAAT
193 GGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAAT
* * *
23421 GTGTAGCTGTGAATTTGGCAGAAATGTGTCAATCTTGCCAGTTAGATGAAAGGTTAAATACCTTT
258 GTCTAGCTGTGCATTTGGCAGAAATGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTT
23486 G
323 G
* * * * * * *
23487 AGTAAATGACTAATTGCCTAGCTGTGCATTTAGTAA-AAAGGTGTCAATCATGAAAGTTAGATGA
1 AGTAAAAGACTAAATGACTAGTTGTGCATTT-GGAAGAAAGGTGACAATCATGACAGTTAGATGA
*
23551 AAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGGTGTGCATTTAGAATAAAGGTGTCAAT
65 AAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGGTGTGCATTTGGAA-AAAGGTGTCAAT
* *
23616 CATTCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGTATTT-
129 CATTCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGACTAGTTGTGCATTTG
* * * *
23680 ACAGAAAGGTGACAATCATGCCAGTTAGATGAAAGGTTAAATACCATTGAGTAAAAGGCTAAAT-
194 GCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATG
* * ** * *
23744 TCCTAGTTGTGCATTTGGTAGAAATGTACCAATCATGTCAGTTAGATGAAAGGTTAAATATCTTT
259 T-CTAGCTGTGCATTTGGCAGAAATGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTT
23809 G
323 G
* * *
23810 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGACGAAAGGTGACAATCATGAGAGTTAGATGAA
1 AGTAAAAGACTAAATGACTAGTTGTGCATTTGGAAGAAAGGTGACAATCATGACAGTTAGATGAA
** *** * * *
23875 A-GTTAAATACCTTTGAGTAAAAGACTAAATGCCTAACTGTGCATTTAGCCTAAAGGGGCCAATA
66 AGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGGTGTGCATTT-GGAAAAAGGTGTCAATC
* * *
23939 ATGCAAGTTAGATGAAAGGTTAAATGCCTTT
130 ATTCCAGTTAGATGAAAGGTTAAATACCTTT
23970 AAAGGTTAAA
Statistics
Matches: 967, Mismatches: 145, Indels: 36
0.84 0.13 0.03
Matches are distributed among these distances:
322 91 0.09
323 699 0.72
324 176 0.18
325 1 0.00
ACGTcount: A:0.37, C:0.12, G:0.21, T:0.30
Consensus pattern (323 bp):
AGTAAAAGACTAAATGACTAGTTGTGCATTTGGAAGAAAGGTGACAATCATGACAGTTAGATGAA
AGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGGTGTGCATTTGGAAAAAGGTGTCAATCA
TTCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGACTAGTTGTGCATTTGGC
AGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGTC
TAGCTGTGCATTTGGCAGAAATGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTG
Found at i:23268 original size:404 final size:402
Alignment explanation
Indices: 22517--23969 Score: 1739
Period size: 404 Copynumber: 3.6 Consensus size: 402
22507 ATTGTTTTAA
* *
22517 AGTAAAAGACTAAATACCTAGTTATGCATTTGG-AAGAAAGGTGTG-AATCATGCCAGTTAGATG
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAA-AAAGGTG-GCAATCATGCCAGTTAGATG
* * * * *
22580 AAAGGTTAAATATCTTTGAGTAAAAGATTAAATGCCTAGGTCTGCATTTGGCAGAAAGGTGCCAA
64 AAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAA
* * * ** * *
22645 TCATGCCAGTTAGATGAAAAGTTAAATACCTTTAACTAAAAGACTAAATAACTAGGTGTGTATTT
129 TCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGCTGTGCATTT
* * * * *
22710 -GGCAGAAAGGTGCCAATCATGCCAGTTAGATGAAAGTTTAATTACCTTTGAGTAAAAGACTAAA
194 AGCCAAAAAGGTGCCAATCATGCAAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAA
* * * * *
22774 TGCCTAGTTGTGCATTTGGCAGAAAGTTGTCAGTCATGCCAGTTAGATGAAAGGTTAAATACATT
259 TGCCTAGCTGTGCATTTAGCA-AAA-ATGTCA-ACATGCCAGTTAGATGAAAGGTTAAATACCTT
22839 TGAGTAAAAGACTAAATGA-CTAGTTGTGCATTTGGAAGAAAGGTGACAATCATGCAGTTAGATG
321 TGAGTAAAAGACTAAAT-ACCTAGTTGTGCATTTGGAAGAAAGGTGACAATCATGCAGTTAGATG
22903 AAAGGTTAAATACCTTTG
385 AAAGGTTAAATACCTTTG
* **
22921 AGTAAAAGACTAAATGCCTAGTTGTACATTTGGCAAAAAGGTGGCAATCATGTTA-TCTAGATGA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAAAAAGGTGGCAATCATGCCAGT-TAGATGA
* * * *
22985 AAGGTTAAATACCTTTGTGTAAAAGACTAAATGACTAGTTATGCATTTGGTAGAAAGGTGTCAAT
65 AAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAAT
* * * * *
23050 CATGCCAGTTAGATGAAAGGTTAAATATCTTTGAGTAAAAGACTCAATGTCTAGCTATGCGTTT-
130 CATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGCTGTGCATTTA
* * * * *
23114 GCCAAAAATGTGTCAATCATGCCAGTTAGATGAAATGTTAAATACCTTTGATTAAAAGACTAAAT
195 GCCAAAAAGGTGCCAATCATGCAAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAAT
** * *
23179 GATTAGCTGTGCAATTAGCAAAAATGTACCAACAAAGCCAGTTAGATGAAAGGTTAAATACCTTT
260 GCCTAGCTGTGCATTTAGCAAAAATGT--CAAC-ATGCCAGTTAGATGAAAGGTTAAATACCTTT
* * * * ** * * * *
23244 GAGTAGAAGACTAAATACCTAGTTGTGCTTTTGGTA-ATATTTGTCAATTATTCCAGTTAGGTGA
322 GAGTAAAAGACTAAATACCTAGTTGTGCATTTGGAAGAAAGGTGACAATCA-TGCAGTTAGATGA
* *
23308 AATGTTAAATTCCTTTG
386 AAGGTTAAATACCTTTG
* ** * * * * *
23325 AGTAAAAGAATGTATGCCTAGCTGTGCGTTTAGCAGAAAA-GTGTCAATCATGCTAGTTAGATGA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCA-AAAAGGTGGCAATCATGCCAGTTAGATGA
* ** * * *
23389 AAGGTTAAATACCTTTGAGTAAAAGACAAAATGTGTAGCTGTGAATTTGGCAGAAATGTGTCAAT
65 AAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAAT
* * *
23454 CTTGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAATGACTAATTGCCTAGCTGTGCATTTA
130 CATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGCTGTGCATTTA
* * *
23519 G-TAAAAAGGTGTCAATCATGAAAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAAT
195 GCCAAAAAGGTGCCAATCATGCAAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAAT
* *
23583 GCCTAGGTGTGCATTTAG-AATAAAGGTGTCAATCATTCCAGTTAGATGAAAGGTTAAATACCTT
260 GCCTAGCTGTGCATTTAGCAA-AAA--TGTCAA-CATGCCAGTTAGATGAAAGGTTAAATACCTT
* *
23647 TGAGTAAAAGACTAAATGCCTAGTTGTGTATTT--ACAGAAAGGTGACAATCATGCCAGTTAGAT
321 TGAGTAAAAGACTAAATACCTAGTTGTGCATTTGGA-AGAAAGGTGACAATCATG-CAGTTAGAT
*
23710 GAAAGGTTAAATACCATTG
384 GAAAGGTTAAATACCTTTG
* * * * * ** *
23729 AGTAAAAGGCTAAATTCCTAGTTGTGCATTTGGTAGAAATGTACCAATCATGTCAGTTAGATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAAAAAGGTGGCAATCATGCCAGTTAGATGAA
* *
23794 AGGTTAAATATCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGG-ACGAAAGGTGACAAT
66 AGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCA-GAAAGGTGTCAAT
** *
23858 CATGAGAGTTAGATGAAA-GTTAAATACCTTTGAGTAAAAGACTAAATGCCTAACTGTGCATTTA
130 CATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGCTGTGCATTTA
* * * *
23922 GCC-TAAAGGGGCCAATAATGCAAGTTAGATGAAAGGTTAAATGCCTTT
195 GCCAAAAAGGTGCCAATCATGCAAGTTAGATGAAAGGTTAAATACCTTT
23970 AAAGGTTAAA
Statistics
Matches: 887, Mismatches: 141, Indels: 43
0.83 0.13 0.04
Matches are distributed among these distances:
402 3 0.00
403 107 0.12
404 765 0.86
405 9 0.01
406 3 0.00
ACGTcount: A:0.37, C:0.12, G:0.21, T:0.30
Consensus pattern (402 bp):
AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAAAAAGGTGGCAATCATGCCAGTTAGATGAA
AGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATC
ATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGCTGTGCATTTAG
CCAAAAAGGTGCCAATCATGCAAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATG
CCTAGCTGTGCATTTAGCAAAAATGTCAACATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGT
AAAAGACTAAATACCTAGTTGTGCATTTGGAAGAAAGGTGACAATCATGCAGTTAGATGAAAGGT
TAAATACCTTTG
Found at i:24069 original size:45 final size:45
Alignment explanation
Indices: 23976--24070 Score: 120
Period size: 45 Copynumber: 2.1 Consensus size: 45
23966 CTTTAAAGGT
* *
23976 TAAATAAAATGCATAATGGTGCATTATAGGCAAGAAATGATGTCA
1 TAAATAAAATGCATAATGGTGCATTAAAGGCAAGAAAGGATGTCA
* * * *
24021 TAAATTAAATTCATAATGGTGCATTAAAGGCATGAAGGGAT-TCTA
1 TAAATAAAATGCATAATGGTGCATTAAAGGCAAGAAAGGATGTC-A
24066 TAAAT
1 TAAAT
24071 GAACATATTA
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
44 2 0.05
45 41 0.95
ACGTcount: A:0.43, C:0.08, G:0.19, T:0.29
Consensus pattern (45 bp):
TAAATAAAATGCATAATGGTGCATTAAAGGCAAGAAAGGATGTCA
Found at i:25478 original size:14 final size:14
Alignment explanation
Indices: 25459--25486 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
25449 TAGCATTAAC
25459 TGCTATGAAGTTAT
1 TGCTATGAAGTTAT
25473 TGCTATGAAGTTAT
1 TGCTATGAAGTTAT
25487 CAAGTCTTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.07, G:0.21, T:0.43
Consensus pattern (14 bp):
TGCTATGAAGTTAT
Found at i:28835 original size:81 final size:81
Alignment explanation
Indices: 28699--32950 Score: 5011
Period size: 81 Copynumber: 52.5 Consensus size: 81
28689 AATGTTTCAA
* * * * *
28699 AGTAAAAGACTAAATGCCTAGCTATGCATTTGGCATAAAGGTATCAATCAAGCCAGTTAGATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAA
28764 AGGTTAAATACCTTTG
66 AGGTTAAATACCTTTG
* * * * *
28780 AGTAAAAGACAAAATGTCTAGCTGTGCATTTGGCAAAAAGGTGTCAATCATGCCAGTTGGATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAA
**
28845 ATATTAAATACCTTTG
66 AGGTTAAATACCTTTG
* * * * * * * * *
28861 ACTAAAAGATTATATGTCTAGCTGTGAAATTGGCAGAAAGGTGACAATCTTGCCAGTTAGATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAA
*
28926 AGGTTAAATACCTTTA
66 AGGTTAAATACCTTTG
* * *
28942 AGTAAAAGACTAAATGCCTAGCTGTGCATTTGGCAG-AAGGTG-CAAATCATGTCAGTTATATGA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTC-AATCATGCCAGTTAGATG-
29005 AAAAGGTTAAATACCTTTG
64 -AAAGGTTAAATACCTTTG
* * * * * * *
29024 GGTAAAAGACTAAATGCATATTTGTACATTTGGAAGAAATGTGTCAATCATGCCAGTTATATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAA
* **
29089 AGGCTAAATACAATTG
66 AGGTTAAATACCTTTG
* * *
29105 AGTAAAAGACTAAATGCATAGTTGTGCATTTGGAAGAAAGGT-TCCAATCATGCCAGTTAGATTA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGT-CAATCATGCCAGTTAGATGA
29169 AAGGTTAAATACCTTTG
65 AAGGTTAAATACCTTTG
* * * *
29186 AGTAAAAGACTAAATGCATAGTTGTGCATTTGGAAGAAAGGT-ACAAATCATGCCAGTTAGATTA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTC-AATCATGCCAGTTAGATGA
29250 AAGGTTAAATACCATTT-
65 AAGGTTAAATACC-TTTG
*
29267 AGTAAAAGACTAAATGACTA-TCTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGA
1 AGTAAAAGACTAAATGCCTAGT-TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGA
* *
29331 AAGGTTTAATACCCTTG
65 AAGGTTAAATACCTTTG
* * * * * *
29348 AGTAAAAGTCTAAATGACTAGTTGTGCATTCGACAGAAAGGTGTCAACCATTCCAGTTAGATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAA
*
29413 AGGTTCAATACCTTTG
66 AGGTTAAATACCTTTG
* * * * * * *
29429 AGTAAAAGACTAAATGTCTAGCTGTGCATTTGGTAGAAAGGTGCCAATCATGCTAGTTATATAAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAA
* *
29494 AGGTTAACTACCTTTT
66 AGGTTAAATACCTTTG
* * * * * * * *
29510 TGTAGAAGACTAATTGACTAGTTGTGCATTTGGGA-AAAAGTGCCAATCATGCCAGTTAGATAAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAA
*
29574 AGGTTAAATAACTTTG
66 AGGTTAAATACCTTTG
* * * * * *
29590 AGTAGAAGACTAAATGCGTAGATGTTCATTTGGTACAAAGGT-TCCAATCATGCCAGTTAGATGA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGT-CAATCATGCCAGTTAGATGA
* *
29654 AAGGTTAAAAATCTTTG
65 AAGGTTAAATACCTTTG
* * * ** * * *
29671 ACTAAAAGATTAAGTGCCTAGCAGTGCATTTGGTAGAAATGTGTCAATCACGCCAGTTAGATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAA
*
29736 AAGTTAAATACCTTTG
66 AGGTTAAATACCTTTG
* ** * * * *
29752 AGTAAAAGACTAAATGCCTAGCTACGTATTTTGCAGAAAGTTGTCAATCATGCCAGTTATATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAA
* * *
29817 AGGCTAAATATCTTTA
66 AGGTTAAATACCTTTG
* * * * *
29833 AGTAAAAGACTAAATGCATACTTCTGCATTTGGGAGAAAGGTGCCAATCATGCCAGTTAGATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAA
29898 AGGTTAAATACCTTTG
66 AGGTTAAATACCTTTG
* * * *
29914 AGTAAAAGAATAAATGCATAGTTGTGCATTTGGCAGAAAGGTGTGAATCATGCCAGTTAGATTAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAA
*
29979 AGGTTAAATA-TTTCTG
66 AGGTTAAATACCTT-TG
* ** * *
29995 GGTAAAAGACTAAATGCCTA-TCTGTGCATTTTCCAGAAAGGTGCCAATCATGTCAGTTAGATGA
1 AGTAAAAGACTAAATGCCTAGT-TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGA
* *
30059 AAGGTCAAGTACCTTTG
65 AAGGTTAAATACCTTTG
* * * * *
30076 GGTAAAAGACTAAATGTCTAGTTATGCATTTGGCAGAATGGTGTCAATCATGCTAGTTAGATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAA
*
30141 TGGTTAAATACCTTTG
66 AGGTTAAATACCTTTG
* * * **
30157 AGTAAAAGACTGAATGCCTAGATGTGCATTTGGTAGAAAGGTACCAATCATGCCAGTTAGATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAA
*
30222 AGGTCAAATACCTTTG
66 AGGTTAAATACCTTTG
* * * * * * *
30238 AGTAAAAGAATAAATGTCTAGTTGTACATTTGGCAAAAAAGTGTCAATCATACAAGTTAGATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAA
*
30303 ACGTTAAATACCTTTG
66 AGGTTAAATACCTTTG
* * * * * *
30319 AGTAAAAGACTTAATGCCTAGATGTGTATTTGGTAGAAAAGTGTCAATCATGCTAGTTAGATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAA
30384 AGGTTAAATACCTTTG
66 AGGTTAAATACCTTTG
* * * *
30400 AATAAAAGACTAAATGCCTAGCTGTGCATTTTG-ATG-AAGAGTGTCAATCATGCTAGTTAGATG
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCA-GAAAG-GTGTCAATCATGCCAGTTAGATG
*
30463 AAAGGTTAAACACCTTTG
64 AAAGGTTAAATACCTTTG
* * * * * *
30481 AGTAAAAGAATAAATGCCTAGATGTGTATTTTGCAAAAAGGTGTCAATGATGCCAGTTAGATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAA
30546 AGGTTAAATACCTTTG
66 AGGTTAAATACCTTTG
* * * * * * *
30562 ACTAAAATACTAAATGCATAGTTATGCATTTGGCAGAAAGGT-TCCACTCAGGCCTGTTAGATGA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGT-CAATCATGCCAGTTAGATGA
*
30626 AAGGTTAAATACCATTG
65 AAGGTTAAATACCTTTG
* * * * *
30643 AGTTAAAGACTAAATGCATAGTTATGCATTTGGCA-AAATGGTGTCAATCATGCAAGTTAGATTA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAA-GGTGTCAATCATGCCAGTTAGATGA
*
30707 AAGGTTAAATACATTTG
65 AAGGTTAAATACCTTTG
* * * *
30724 AGTAAAAGACTAAATGCTTA-TACGCGCATTTGGCAGAAAGGTGCCAATCATGCCAGTTAGATGA
1 AGTAAAAGACTAAATGCCTAGT-TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGA
*
30788 AAGGTCAAATACCTTTG
65 AAGGTTAAATACCTTTG
* * * *
30805 GGTAAAAGACTAAATGTCTAGTTATGCATTTGGCAGAATGGTGTCAATCATGCCAGTTAGATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAA
30870 AGGTTAAATACCTTTG
66 AGGTTAAATACCTTTG
* * * **
30886 AGTAAAAGACTGAATGCCTAGATGTGCATTTGGTAGAAAGGTACCAATCATGCCAGTTAGATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAA
* *
30951 AGGTCAAATATCTTTG
66 AGGTTAAATACCTTTG
* * *
30967 AGTAAAAGACTAAATGTCTAGTTGTGCATTTGGCAAAAAGGTGTCAATCATGCTAGTTAGATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAA
*
31032 ACGTTAAATACCTTTG
66 AGGTTAAATACCTTTG
* * * * *
31048 AGTAAAAGACTTAATGCCTAGATGTTCATTTGGTAGAAAGGTGTCAATCATGCTAGTTAGATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAA
*
31113 A-GTTAAATACCTTTT
66 AGGTTAAATACCTTTG
** * * * * * *
31128 TCTAGAAGACTAATTGACTAGTTGTGCATTTAGG-AAAAAGGTGCCAATCATGCCAGTTAGATAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTT-GGCAGAAAGGTGTCAATCATGCCAGTTAGATGA
*
31192 AAGGTTAAATAACTTTG
65 AAGGTTAAATACCTTTG
* * ** * * *
31209 AGTAGAAGACTAAAGGTGTAGATGTTCATTTGGTAGAAAGGT-TCCAATCATGCCAGTTAGATGA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGT-CAATCATGCCAGTTAGATGA
*
31273 AAGGTTAAATATCTTTG
65 AAGGTTAAATACCTTTG
* * ** * * * * *
31290 AGTAAAAGATTAAGTGCCTAGCAGTGTATTTGGTAGAAATGTGTCAATCACGCCAGTTATATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAA
*
31355 AAGTTAAATACCTTTG
66 AGGTTAAATACCTTTG
* ** * * ** *
31371 AGTAAAAGACTAAATGCCTAGCTACGTATTTTGCAGAAAATTGTCAATCATGCCAGTTATATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAA
* *
31436 AGGCTT-AATATCTTTA
66 AGG-TTAAATACCTTTG
* * * * *
31452 AGTAAAAGACTAAATGCATACTTCTGCATTTCGG-AGAAAGGTGCCAAACATGCCAGTTAGATG-
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTT-GGCAGAAAGGTGTCAATCATGCCAGTTAGATGA
31515 AAGGTTAAATACCTTTG
65 AAGGTTAAATACCTTTG
* * * * *
31532 AGTAAAAGAATAAATGCATAGTTGTGCATTTGGCAGAAAGGTGTGAATCATGACAGTTAGATTAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAA
*
31597 AGGTTAAATA-TTTATG
66 AGGTTAAATACCTT-TG
* * * *
31613 GGTAAAAGACTAAATACCT-GTCTGTGCATTTGGCAGAAATGTGCCAATCATGCCAGTTAGATGA
1 AGTAAAAGACTAAATGCCTAGT-TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGA
*
31677 AAGGTCAAATACCTTT-
65 AAGGTTAAATACCTTTG
* * *
31693 AGGTAAAAGACTAAATGTCTAGTTATGCATTTGGCAGAATGGTGTCAATCATGCCAGTTAGATGA
1 A-GTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGA
*
31758 ACGGTTAAATACCTTTG
65 AAGGTTAAATACCTTTG
* * * *
31775 AGTAAAAGACTGAATGCCTAGATGTGCATTTGGTAGAAAGGTGACAATCATGCCAGTTAGATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAA
*
31840 AGGTCAAATACCTTTG
66 AGGTTAAATACCTTTG
* * *
31856 AGTAAAAGACTAAATGTCTAGTTGTGCATTTGGCAAAAAGGTGTCAATCATGCTAGTTAGATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAA
**
31921 ACATTAAATACCTTTG
66 AGGTTAAATACCTTTG
* * * *
31937 AGTAAAAGACTTAATGCCTAGATGTGCATTTGGTAGAAAGGTGTCAATCATGCTAGTTAGATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAA
*
32002 AGGTTAAATACCTTTA
66 AGGTTAAATACCTTTG
* * * * *
32018 AATAAAAGATTAAATGCCTAGCTGTGCATTTGGCTG-AAGAGT-TCCAATCATGCTAGTTAGATG
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAG-GTGT-CAATCATGCCAGTTAGATG
*
32081 AAAGGTTAAACACCTTTG
64 AAAGGTTAAATACCTTTG
* * * * * * *
32099 AGTAAAAGATTAAATGCCTAGATGTGTATTTTGCAAAAAGGTGTCAATGATGCCAGCTAGATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAA
*
32164 AGGTTAAAAACCTTTG
66 AGGTTAAATACCTTTG
* * * * *
32180 ACTAAAAGACTAAATGCATAGTTATGCATTTGGCAGAAAGGT-TCAACTCAGGCCTGTTAGATGA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAA-TCATGCCAGTTAGATGA
*
32244 AAGGTTAAATACCATTG
65 AAGGTTAAATACCTTTG
** * * *
32261 AGTAAAAGACTAAATGTATAGTTGTGCATTTGG-AAAAATGGTGTGAATCATGCCAGTTAGATTA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAA-GGTGTCAATCATGCCAGTTAGATGA
*
32325 AAGGTTAAATACATTTG
65 AAGGTTAAATACCTTTG
* * * * * *
32342 AGTAAAAGACTAAATGCTTA-TACGTGCATTTGGAAGAAATGTGCCAATCATGCCTGTTAGATGA
1 AGTAAAAGACTAAATGCCTAGT-TGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGA
*
32406 AAGGTCAAATACCTTTG
65 AAGGTTAAATACCTTTG
* * * *
32423 GGTAAAAGACTAAATGTCTAGTTATGCATTTGGCAGAATGGTGTCAATCATGCCAGTTAGATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAA
32488 AGGTTAAATACCTTTG
66 AGGTTAAATACCTTTG
* * * *
32504 AGTAAAAGACTGAATGCCTAGATGTGCATTTGGTAGAAAGGTGCCAATCATGCCAGTTAGATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAA
*
32569 AGGTCAAATACCTTTG
66 AGGTTAAATACCTTTG
* * * * *
32585 AGTAAAAGACTAAATGTCTAGTTGTGCATTTGGCAAAAATGTGTCAATCATACTAGTTAGATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAA
*
32650 ACGTTAAATACCTTTG
66 AGGTTAAATACCTTTG
* * * *
32666 AGTAAAAGACTTAATGCCTAGATGTGCATTTGGTAGAAAGGTGTCAATCATGCTAGTTAGATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAA
32731 AGGTTAAATACCTTTG
66 AGGTTAAATACCTTTG
** * * ** * **
32747 AAAAAAAGATTAAATGCCTAGCTGTATATTTGGCTG-AAGAGTGTCAATCATGATAGTTAGATGA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAG-GTGTCAATCATGCCAGTTAGATGA
*
32811 AAGGTTAAACACCTTTG
65 AAGGTTAAATACCTTTG
* * * * * *
32828 ATTAAAAGATTAAATGCCTAGATT-TGTATTTTGCAAAAAGGTGTCAATGATGCCAGTTAGATGA
1 AGTAAAAGACTAAATGCCTAG-TTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGA
32892 AAGGTTAAATACCTTTG
65 AAGGTTAAATACCTTTG
* * * *
32909 ACTAAAAGACTAAATTCATAGTTATGCATTTGGCAGAAAGGT
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGT
32951 TAAATACCAT
Statistics
Matches: 3561, Mismatches: 551, Indels: 118
0.84 0.13 0.03
Matches are distributed among these distances:
79 5 0.00
80 256 0.07
81 3187 0.89
82 90 0.03
83 22 0.01
84 1 0.00
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.30
Consensus pattern (81 bp):
AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAA
AGGTTAAATACCTTTG
Found at i:29353 original size:243 final size:240
Alignment explanation
Indices: 28699--41852 Score: 13907
Period size: 243 Copynumber: 54.3 Consensus size: 240
28689 AATGTTTCAA
* * * * *
28699 AGTAAAAGACTAAATGCCTAGCTATGCATTTGGCATAAAGGTATCAATCAAGCCAGTTAGATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAA
* * * *
28764 AGGTTAAATACCTTTGAGTAAAAGACAAAATGTCTAGCTGTGCATTTGGCAAAAAGGTGTCAATC
65 AGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAATC
* ** * * * * * * *
28829 ATGCCAGTTGGATGAAATATTAAATACCTTTGACTAAAAGATTATATGTCTAGCTGTGAAATTGG
129 ATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGG
* * * *
28894 CAGAAAGGTGACAATCTTGCCAGTTAGATGAAAGGTTAAATACCTTTA
194 AAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTG
* * * * *
28942 AGTAAAAGACTAAATGCCTAGCTGTGCATTTGGCAG-AAGGTGCAAATCATGTCAGTTATATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGTTC-AATCATGCCAGTTAGATG--
* * * * *
29006 AAAGGTTAAATACCTTTGGGTAAAAGACTAAATGCATATTTGTACATTTGGAAGAAATGTGTCAA
63 AAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAA
* * ** *
29071 TCATGCCAGTTATATGAAAGGCTAAATACAATTGAGTAAAAGACTAAATGCATAGTTGTGCATTT
127 TCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTT
*
29136 GGAAGAAAGGTTCCAATCATGCCAGTTAGATTAAAGGTTAAATACCTTTG
192 GGAAGAAAGGTT-CAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTG
* * *
29186 AGTAAAAGACTAAATGCATAGTTGTGCATTTGGAAGAAAGGTACAAATCATGCCAGTTAGATTAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGTTC-AATCATGCCAGTTAGATGAA
*
29251 AGGTTAAATACCATTT-AGTAAAAGACTAAATGACTATCTGTGCATTTGGCAGAAAGGTGTCAAT
65 AGGTTAAATACC-TTTGAGTAAAAGACTAAATGCCTAT-TGTGCATTTGGCAGAAAGGTGTCAAT
* * * * *
29315 CATGCCAGTTAGATGAAAGGTTTAATACCCTTGAGTAAAAGTCTAAATGACTAGTTGTGCA-TTC
128 CATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTG
* * *
29379 GACAGAAAGGTGTCAACCATTCCAGTTAGATGAAAGGTTCAATACCTTTG
193 GA-AGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTG
* * * * * * *
29429 AGTAAAAGACTAAATGTCTAGCTGTGCATTTGGTAGAAAGGTGCCAATCATGCTAGTTATATAAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAA
* ** * * * * * *
29494 AGGTTAACTACCTTTTTGTAGAAGACTAATTGACTAGTTGTGCATTTGGGA-AAAAGTGCCAATC
65 AGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAATC
* * * * * *
29558 ATGCCAGTTAGATAAAAGGTTAAATAACTTTGAGTAGAAGACTAAATGCGTAGATGTTCATTTGG
129 ATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGG
* * * *
29623 TACAAAGGTTCCAATCATGCCAGTTAGATGAAAGGTTAAAAATCTTTG
194 AAGAAAGGTT-CAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTG
* * * ** * * *
29671 ACTAAAAGATTAAGTGCCTAGCAGTGCATTTGGTAGAAATGTGTCAATCACGCCAGTTAGATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAA
* * ** * * *
29736 AAGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGCTACGTATTTTGCAGAAAGTTGTCAATC
65 AGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAATC
* * * * * * *
29801 ATGCCAGTTATATGAAAGGCTAAATATCTTTAAGTAAAAGACTAAATGCATACTTCTGCATTTGG
129 ATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGG
* *
29866 GAGAAAGGTGCCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTG
194 AAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTG
* * * * *
29914 AGTAAAAGAATAAATGCATAGTTGTGCATTTGGCAGAAAGGTGTGAATCATGCCAGTTAGATTAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAA
* * ** *
29979 AGGTTAAATA-TTTCTGGGTAAAAGACTAAATGCCTATCTGTGCATTTTCCAGAAAGGTGCCAAT
65 AGGTTAAATACCTT-TGAGTAAAAGACTAAATGCCTAT-TGTGCATTTGGCAGAAAGGTGTCAAT
* * * * * *
30043 CATGTCAGTTAGATGAAAGGTCAAGTACCTTTGGGTAAAAGACTAAATGTCTAGTTATGCATTTG
128 CATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTG
* * * *
30108 GCAGAATGGTGTCAATCATGCTAGTTAGATGAATGGTTAAATACCTTTG
193 GAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTG
* * * *
30157 AGTAAAAGACTGAATGCCTAGATGTGCATTTGGTAGAAAGGTACCAATCATGCCAGTTAGATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAA
* * * * * *
30222 AGGTCAAATACCTTTGAGTAAAAGAATAAATGTCTAGTTGTACATTTGGCAAAAAAGTGTCAATC
65 AGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAATC
* * * * * *
30287 ATACAAGTTAGATGAAACGTTAAATACCTTTGAGTAAAAGACTTAATGCCTAGATGTGTATTTGG
129 ATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGG
* * *
30352 TAGAAAAGTGTCAATCATGCTAGTTAGATGAAAGGTTAAATACCTTTG
194 AAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTG
* * * * *
30400 AATAAAAGACTAAATGCCTAGCTGTGCATTTTGATG-AAGAGTGTCAATCATGCTAGTTAGATGA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGAAGAAAG-GT-TCAATCATGCCAGTTAGATGA
* * * * * *
30464 AAGGTTAAACACCTTTGAGTAAAAGAATAAATGCCTAGATGTGTATTTTGCAAAAAGGTGTCAAT
64 AAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAAT
* * * * *
30529 GATGCCAGTTAGATGAAAGGTTAAATACCTTTGACTAAAATACTAAATGCATAGTTATGCATTTG
128 CATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTG
* * * * *
30594 GCAGAAAGGTTCCACTCAGGCCTGTTAGATGAAAGGTTAAATACCATTG
193 GAAGAAAGGTT-CAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTG
* * * * * *
30643 AGTTAAAGACTAAATGCATAGTTATGCATTTGGCAA-AATGGTGTCAATCATGCAAGTTAGATTA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGG-AAGAAAGGT-TCAATCATGCCAGTTAGATGA
* * * * *
30707 AAGGTTAAATACATTTGAGTAAAAGACTAAATGCTTATACGCGCATTTGGCAGAAAGGTGCCAAT
64 AAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAT-TGTGCATTTGGCAGAAAGGTGTCAAT
* * * *
30772 CATGCCAGTTAGATGAAAGGTCAAATACCTTTGGGTAAAAGACTAAATGTCTAGTTATGCATTTG
128 CATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTG
* *
30837 GCAGAATGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTG
193 GAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTG
* * * *
30886 AGTAAAAGACTGAATGCCTAGATGTGCATTTGGTAGAAAGGTACCAATCATGCCAGTTAGATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAA
* * * *
30951 AGGTCAAATATCTTTGAGTAAAAGACTAAATGTCTAGTTGTGCATTTGGCAAAAAGGTGTCAATC
65 AGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAATC
* * * * *
31016 ATGCTAGTTAGATGAAACGTTAAATACCTTTGAGTAAAAGACTTAATGCCTAGATGTTCATTTGG
129 ATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGG
* * *
31081 TAGAAAGGTGTCAATCATGCTAGTTAGATGAAA-GTTAAATACCTTTT
194 AAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTG
** * * * * *
31128 TCTAGAAGACTAATTGACTAGTTGTGCATTTAGGAA-AAAGGTGCCAATCATGCCAGTTAGATAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTT-GGAAGAAAGGT-TCAATCATGCCAGTTAGATGA
* * * ** * * *
31192 AAGGTTAAATAACTTTGAGTAGAAGACTAAAGGTGTAGATGTTCATTTGGTAGAAAGGT-TCCAA
64 AAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGT-CAA
* * * ** *
31256 TCATGCCAGTTAGATGAAAGGTTAAATATCTTTGAGTAAAAGATTAAGTGCCTAGCAGTGTATTT
127 TCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTT
* * * * *
31321 GGTAGAAATGTGTCAATCACGCCAGTTATATGAAAAGTTAAATACCTTTG
192 GGAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTG
* ** * * * ** *
31371 AGTAAAAGACTAAATGCCTAGCTACGTATTTTGCAGAAAATTGTCAATCATGCCAGTTATATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAA
* * * * *
31436 AGGCTT-AATATCTTTAAGTAAAAGACTAAATGCATACTTCTGCATTTCGG-AGAAAGGTGCCAA
65 AGG-TTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTT-GGCAGAAAGGTGTCAA
* * *
31499 ACATGCCAGTTAGATG-AAGGTTAAATACCTTTGAGTAAAAGAATAAATGCATAGTTGTGCATTT
127 TCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTT
* * * * *
31563 GGCAGAAAGGTGTGAATCATGACAGTTAGATTAAAGGTTAAATA-TTTATG
192 GGAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTTAAATACCTT-TG
* * * * *
31613 GGTAAAAGACTAAATACCT-GTCTGTGCATTTGGCAGAAATGTGCCAATCATGCCAGTTAGATGA
1 AGTAAAAGACTAAATGCCTAGT-TGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGA
* * * *
31677 AAGGTCAAATACCTTT-AGGTAAAAGACTAAATGTCTAGTTATGCATTTGGCAGAATGGTGTCAA
64 AAGGTTAAATACCTTTGA-GTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAA
* * *
31741 TCATGCCAGTTAGATGAACGGTTAAATACCTTTGAGTAAAAGACTGAATGCCTAGATGTGCATTT
127 TCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTT
* * *
31806 GGTAGAAAGGTGACAATCATGCCAGTTAGATGAAAGGTCAAATACCTTTG
192 GGAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTG
* *
31856 AGTAAAAGACTAAATGTCTAGTTGTGCATTTGGCAA-AAAGGTGTCAATCATGCTAGTTAGATGA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGG-AAGAAAGGT-TCAATCATGCCAGTTAGATGA
** * * *
31920 AACATTAAATACCTTTGAGTAAAAGACTTAATGCCTAGATGTGCATTTGGTAGAAAGGTGTCAAT
64 AAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAAT
* * * * *
31985 CATGCTAGTTAGATGAAAGGTTAAATACCTTTAAATAAAAGATTAAATGCCTAGCTGTGCATTTG
128 CATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTG
** * *
32050 GCTG-AAGAGTTCCAATCATGCTAGTTAGATGAAAGGTTAAACACCTTTG
193 GAAGAAAG-GTT-CAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTG
* * * * * *
32099 AGTAAAAGATTAAATGCCTAGATGTGTATTTTGCAA-AAAGGTGTCAATGATGCCAGCTAGATGA
1 AGTAAAAGACTAAATGCCTAGTTGTGCA-TTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGA
* * * *
32163 AAGGTTAAAAACCTTTGACTAAAAGACTAAATGCATAGTTATGCATTTGGCAGAAAGGT-TCAAC
64 AAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAA-
* * * **
32227 TCAGGCCTGTTAGATGAAAGGTTAAATACCATTGAGTAAAAGACTAAATGTATAGTTGTGCATTT
127 TCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTT
* * *
32292 GGAA-AAATGGTGTGAATCATGCCAGTTAGATTAAAGGTTAAATACATTTG
192 GGAAGAAA-GGT-TCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTG
* * * * *
32342 AGTAAAAGACTAAATGCTTA-TACGTGCATTTGGAAGAAATGTGCCAATCATGCCTGTTAGATGA
1 AGTAAAAGACTAAATGCCTAGT-TGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGA
* * * * *
32406 AAGGTCAAATACCTTTGGGTAAAAGACTAAATGTCTAGTTATGCATTTGGCAGAATGGTGTCAAT
64 AAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAAT
* *
32471 CATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTGAATGCCTAGATGTGCATTTG
128 CATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTG
* * *
32536 GTAGAAAGGTGCCAATCATGCCAGTTAGATGAAAGGTCAAATACCTTTG
193 GAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTG
* * * *
32585 AGTAAAAGACTAAATGTCTAGTTGTGCATTTGGCAA-AAATGTGTCAATCATACTAGTTAGATGA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGG-AAGAAAGGT-TCAATCATGCCAGTTAGATGA
* * * *
32649 AACGTTAAATACCTTTGAGTAAAAGACTTAATGCCTAGATGTGCATTTGGTAGAAAGGTGTCAAT
64 AAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAAT
* ** * * **
32714 CATGCTAGTTAGATGAAAGGTTAAATACCTTTGAAAAAAAGATTAAATGCCTAGCTGTATATTTG
128 CATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTG
** ** *
32779 GCTG-AAGAGTGTCAATCATGATAGTTAGATGAAAGGTTAAACACCTTTG
193 GAAGAAAG-GT-TCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTG
* * * * *
32828 ATTAAAAGATTAAATGCCTAGATT-TGTATTTTGCAA-AAAGGTGTCAATGATGCCAGTTAGATG
1 AGTAAAAGACTAAATGCCTAG-TTGTGCA-TTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATG
* * * *
32891 AAAGGTTAAATACCTTTGACTAAAAGACTAAATTCATAGTTATGCATTTGGCAGAAAGGT-T-AA
63 AAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAA
* * *
32954 --ATACCA--T---TG--A-G-TAAA-A-----GACTAAATG-C---A----TAGTTGTGCATTT
127 TCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTT
* * * *
32994 GGCAA-AATGGTGTGAATCATGCCAGTTAGATTAAAGGTTAAATACATTTG
192 GG-AAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTG
* * * * *
33044 AGTAAAAGACTAAATGCTTA-TACGTGCATTTGGCAGAAAGGTTCCAATCAAGCCAGTTAGATAA
1 AGTAAAAGACTAAATGCCTAGT-TGTGCATTTGGAAGAAAGGTT-CAATCATGCCAGTTAGATGA
* * *
33108 AAGGTCAAA-ACCTTTTGAGTAAAAGACTAAATGTCTAGTTGAGCATTTGGCAGAAAGGTGTCAA
64 AAGGTTAAATACC-TTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAA
* * * * *
33172 TCATGCCAGTTAGATGAAAGGTTAAATACCTTTAAATAAAAGGCTAAATGCCTAGATATGCATTT
127 TCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTT
* * * *
33237 GGCAGAAAGGTGTCAATCATGCCACTTAAATGAAAGGTAAAATACCTTTG
192 GGAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTG
* * * * **
33287 AGTAAAAGACTAAATGTCTAGTTGTGCTTTTGGCAA-AAATGTGTCAATCATGCTAGTTTCATGA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGG-AAGAAAGGT-TCAATCATGCCAGTTAGATGA
* * * * * * *
33351 AAGGTTAAATCCCTTTAAGTAAAAGACTTAATGCCTAAATATGCATTTGGTAGAAAGGTGGCAAT
64 AAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCT-ATTGTGCATTTGGCAGAAAGGTGTCAAT
* * *
33416 CATGCCAGTTAGATGAAAGGTTAAATACCTTTGAATAACAGATTAAATGCCTAGTTGTGCATTTG
128 CATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTG
* * * * *
33481 GCAGGAAGGTGTCAATCATGCCAGTTAGACGAAAGGTTAAACATCTTTG
193 GAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTG
* * * * *
33530 AGTAAAAGATTAAATGCCTAGATGTGTATTTTGCAA-AAAGGGTTCAATCATGCCAGCTAGATGA
1 AGTAAAAGACTAAATGCCTAGTTGTGCA-TTTGGAAGAAA-GGTTCAATCATGCCAGTTAGATGA
** * * * * * **
33594 AAGGTTAAATATATTTAAGTAAAAGACTAAATTCATAGTTTTGCATTTGGAAGAAAGGTACCAAT
64 AAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAAT
* ** *
33659 CATGCCAGTTAGATGAAAGGTTAAATACCTTGGAGTAAAAGACTAAATGTATAGTTGTGCATATG
128 CATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTG
* * * * *
33724 GCAGAAAGGTGCAAATCATGCCAGTTAGATGAAAGATTAAATACTTTTT
193 GAAGAAAGGTTC-AATCATGCCAGTTAGATGAAAGGTTAAATACCTTTG
* **
33773 AGTAAAAGACTAAATGTCTA-TCTGTGCATTTGTTAGAAAGGTGTCAATCATGCCAGTTAGATGA
1 AGTAAAAGACTAAATGCCTAGT-TGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGA
* ** * * *
33837 AAAGTTAAATACCTTTGAGTAAAATTCTGAATGACTAGTTGTGCATTTGGCAGAAAGGTGCCAAT
64 AAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAAT
* * * *
33902 CAAGCCAGTTAGATTAAAGGTTAAATAACTTTGAGTAAAAGACTAAATGTCTAGTTGTGCATTTG
128 CATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTG
* * * *
33967 GTAGAAATGTGTCAATCATGTCGGTTAGATGAAAGGTTAAAT--CTCTTG
193 GAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTTAAATACCT-TTG
* * * * *
34015 AGTAAAAGATTAAATGCCTAGCTGTGCATTTGGTAGAAATGTGTCAATCATGCCAGTTGGATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAA
* * * ** * *
34080 AGGTTAAATAACTTTTAGTAAAAGTCTAAATGCCTAGAAGTACATTTGGAAGAAAGGT-TCCAAT
65 AGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGT-CAAT
* * * *
34144 CATGCCAATTAGATGAAAGGTTAAATATCTTTGAGTAAAAGAATAAATGCCTAGCTGTGCATTTG
128 CATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTG
* * *
34209 GTAGAAATGTGTCAATCATGCCAGTTAGATGAATGGTTAAATACCTTTG
193 GAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTG
* * * * * *
34258 AGTAAAAGACTAAATGCCTAGCTT-TGTATTTTGCAGAAAGTTGTCAATCATGTCAGTTATATGA
1 AGTAAAAGACTAAATGCCTAG-TTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGA
* ** * * *
34322 AAGGCTAAATACCTTTGAGTAAAAGACTAAATGAATAGTTATGCATTTGGGAGAAAGGTATCAAT
64 AAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAAT
* * *
34387 CATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGAATATATGCATAGTTGTGCATTTG
128 CATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTG
* * * * **
34452 GCAGAAAGGTGTGAATCATGCCAGTTAGATTAATGGTTAAATATTTTTG
193 GAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTG
* ** * * *
34501 GGTAAAAGACTAAATTTCTA-TCTGTGCATTTGGCAGAAAGGTGCCAATCATGCCAGTTATATGA
1 AGTAAAAGACTAAATGCCTAGT-TGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGA
* * ** * * * *
34565 AAGGTCAAATACCTTTGAGTAAAAGAATAAATATCTAGTTATGCATTTGACAGAATGGTGTCAAC
64 AAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAAT
*
34630 CATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGATGTGCATTTG
128 CATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTG
*
34695 GAAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTCAAATACCTTTG
193 GAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTG
* * *
34744 AGTAAAAGACTAAATGTCTAGTTGTGCATTTGGAAAAAAGGTGTCAATCATGCTAGTTAGATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAA
* * * * *
34809 ACGTTAAATAACTTTGAGTAAAAGACTTAATGCCTAGATGTGCATTTGGTAGAAAGGTGTCAATC
65 AGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAATC
* * * * * *
34874 ATGCTAGTTAGATGAAAGGTTAAACACCTTTGTGTAAAAGATTAAATGCCTAGATGTGTATTTTG
129 ATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCA-TTTG
* *
34939 CAA-AAAGGTGTCAATGATGCCAGTTAGATGAAAGGTTAAATACCTTTG
193 GAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTG
* * * * * * * * *
34987 ACTAAAAGACCAAATGCATAGTTATGCATTTGGCAGAAAGGTTCCACTTAGGCCTGTTAGATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGTT-CAATCATGCCAGTTAGATGAA
* * * *
35052 AGGTTAAATACCATTGAGTAAAAGACTAAATGCATAGTTGTGCATTTGGCAAAAAGGTGTGAATC
65 AGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAATC
* ** *
35117 ATGCCAGTTAGATTAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGTTTA-TACGTGCATTTG
129 ATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGT-TGTGCATTTG
* * * *
35181 GCAGAAAGGTGCCAATCATGCCAGTTAGATAAAAGGTTAAAAACCTTTG
193 GAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTG
* * *
35230 AGTAAAAGACTAAAAGTCTAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAA
* * * * * * ** * *
35295 ATGTGAAATACCTTTAAGTAAAAGACTAAATGCCTAGATATGTATTTGGCATTAAGGTGCCAATG
65 AGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAATC
** * * *
35360 ATGCCAGTTAGATGAATTGTAAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTATGCTTTTGG
129 ATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGG
** * *
35425 CAA-AATTGTGTCAATCATGCCAGTTCA-ATGAAAGGTTAAATCCCTTTA
194 -AAGAAAGGT-TCAATCATGCCAGTT-AGATGAAAGGTTAAATACCTTTG
* * * ** *
35473 AGTAAAAGTCTTAATCCCTAAATGTGCATTTGGTAGAAAGGTGTCAATCATGCCAGTTAGATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAA
* * * * *
35538 ATGTTATATACCTTTGAGTAACAGATTAAATGCCTAGTTGTGCATTTGGCATAAAGGTGTCAATC
65 AGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAATC
* * * * *
35603 ATGCCAGTTAGACGAAAGGTTAAACACCTTTGAGTAAAAGATTAAATGCCTAGATGTGTATTTTG
129 ATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCA-TTTG
* * * ** *
35668 CAA-AAAGGTGTCAATCATGCCAGCTAGATGAAATGTTAAATATATTTA
193 GAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTG
* * *
35716 AGTAAAAGACTAAATGCATAGTTTTGCATTTGGAAGAAAGGTACCAATCATGCCAGTTAGATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAA
* * * *
35781 AGGTTAAATACCTTGGAGTAAAAGACTAAATACATAGTTGTACATTTGGCAGAAAGGTG-CAAAT
65 AGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTC-AAT
* * * * * *
35845 AATGTCA-TATAGATGAAAGGTTAAATTCCTTTTAGTAAAACACTAAATGTCTA-TCTGTGCATT
128 CATGCCAGT-TAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGT-TGTGCATT
** * *
35908 TGTTAGAAAGGTTTCAATCATGCCAGTTAGATGAAAAGTTAAATACCATTG
191 TGGAAGAAAGG-TTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTG
* * *
35959 AGTAAAAGACTAATTGCCTAGCTGTGCATTTTGGAA-AAAGGTGTCAATCATGCCAGTTAGTTGA
1 AGTAAAAGACTAAATGCCTAGTTGTGCA-TTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGA
* * * * * *
36023 CAGGTTAAATACCTTTGAGTAAAAGTCTGAATGACTAGCTGTGCATTTGGCAGAAAGGTGCCAAT
64 AAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAAT
* * * * *
36088 CAAGCCAGTTAGATGAAAGGTTAAATAACTTTGACTAAAAGACTAAATGTCTAGCTGTGCATTTG
128 CATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTG
* * *
36153 GTAGAAATGTGCCAATCATGCCAGTTAGATGAAAGGTTAAATACC-TTG
193 GAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTG
* * * * * * *
36201 ACTAAAAGATTAAATGCCTAGCTGTGCATTTGGTAGAAATGTTTCAATAATGCCAGTTGGATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGAAGAAA-GGTTCAATCATGCCAGTTAGATGAA
* * * * * * *
36266 AGGTTAAATAACTTTTAGTAAAAGACTAAATGCCTAGATGTACATTTGGAAGAAAGCTTTCAATC
65 AGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAATC
* * * *
36331 ATGCCAATTAGATGAAAGGTTAAATATCTTTGAGTAAAAGAATAAATGCCTAGCTGTGCATTTGG
129 ATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGG
* * * * *
36396 TATAAATGTGTCAATCATGTCAGTTAGATGAATGGTTAAATACCTTTG
194 AAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTG
* * * * *
36444 AGTAAAAGACTAAATACCTAGCTT-TGTATTTTGTAGAAA-G------CA----AGTTATATGAA
1 AGTAAAAGACTAAATGCCTAG-TTGTGCATTTGGAAGAAAGGTTCAATCATGCCAGTTAGATGAA
* * *
36497 AGGCTAAATACCTTTGAGTAAAAGACTAAATGCATAGTTATGCATTTGGCAGAAAGGTGTCAATC
65 AGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAATC
** * *
36562 ATGCTTGTTAGATGAAAAGTTAAATACCTTTGAGTAAAAGACTAAATGCATAGTTGTGCATTTGG
129 ATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGG
* *
36627 AAGAAAGGTGTGAATCATGCCAGTTAGATTAAAGGTTAAATACCTTTG
194 AAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTG
* * * *
36675 AGTAAAATACTAAATGCCTATTTGTGCATTTGGCAGAAAGGTGTCAGTCATGCCAGTTAGATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAA
* * ** *
36740 ATGTCAAATACCTTTGAGTAAAAGACTAAATTTCTAGTTGTGCATTTGGTAGAAAGGTGTCAATC
65 AGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAATC
* * * * *
36805 AAGCCAGTTAGA-AAAAGGTTAAATACCTTTGAGTAAAATACTAAATGCCTAGTTGTGTATTTTG
129 ATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGG
* * * *
36869 CATAAATGTGTT-AATCATGCCAGTTAGATGAAAGCTTAAATACCTTTA
194 AAGAAA-G-GTTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTG
* * * *
36917 AGTAAAAGATTAAATGCCTAGTTGTGCATTTGGCAGAAATATGTT-AATCATGTCAGTTAGATGA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGAAG-AA-AGGTTCAATCATGCCAGTTAGATGA
* * * * * * ** * *
36981 AAGGTTAAACACCTTTGAATAAAAGATTAATTACCTAGATGTTTATTTTGCAGAAAGGTGTCAAC
64 AAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAAT
* * * * * * * *
37046 CATGCCACTTACATGAAAGGTTAAATACATTTCAGTAAAATACTAATTGCATAGTTATGCATTTG
128 CATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTG
* * * * * **
37111 GAATAAATGTGCCAATCATGCAAGTTATATGAAATTTTAAATACCTTTG
193 GAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTG
* * * * * * *
37160 TGTAAAAGAATAAATGCATAGTTGTGCATCTGGCAGAAAGGTGTAAATCATGCCAGTTAGATTAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAA
**
37225 AGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAACCGTGCATTTGGCAGAAAGGTGTCAATC
65 AGGTTAAATACCTTTGAGTAAAAGACTAAATGCCT-ATTGTGCATTTGGCAGAAAGGTGTCAATC
* * * * * * *
37290 ATGCTAGATAGATGAAAGGTTAAATATCTTTGAGTAAAAGACTAATTGTCTAGATGTTCATTTGG
129 ATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGG
* * * * * *
37355 AAAAAAGGTGCCATGCATTCCAGTTGGATGAAAGGTTAAATAACTTTG
194 AAGAAAGGTTCAAT-CATGCCAGTTAGATGAAAGGTTAAATACCTTTG
* * * * * * *
37403 AGTAAAAGTCTAAATGACTAGTTTTGCATTTAGCATAAAGGTGCCAATCATGCCAGTTAGATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAA
* * * * * *
37468 ATGTTAAATACCTTGGAGTAAAAGACTAAATGACTAGCTGTGCATTTGGTAGAAAGGTGCCAATC
65 AGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAATC
* * * * *
37533 ATGCTAGTTATATGAAAGGTTAAATACCTTTGTGTAAAAGACTAAATGACTAGATGTGCATTTGG
129 ATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGG
* *
37598 CAA-AAAGGTGCCAATCATGCCAGTTAGATGAAAGGTTAAATAACTTTG
194 -AAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTG
* *
37646 AGTAAAAGACTAAATGCCTAGATGTGCATTTGGAAGAAAGGTTCCAATCATGCCAATTAGATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGTT-CAATCATGCCAGTTAGATGAA
* * * * *
37711 AGGTTAAATATCTTTGAGTAAAAGAATAAATGCCTAGCTGTGCATTTGGTAGAAATGTGTCAATC
65 AGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAATC
* * * *
37776 ATGCCAATTAGATGAATGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGCTT-TGTATTTT
129 ATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG-TTGTGCATTTG
* * * *
37840 GCAGAAA-GTTGACAATCATGTCAGTTATATGAAAGGCTAAATACCTTTG
193 GAAGAAAGGTT--CAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTG
** * *
37889 AGTAAAAGACTAAATGAATAGTTGTGCATTTGGCAGAAAGGTGTCAATAATGCCAGTTAGATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAA
* * * * * * * *
37954 AGGTTAAATACCTATGAGTAAAAGACTTAATGCATAGTTTTACATTTTGCAGAATGGTGTGAATC
65 AGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAATC
* * ** * * * *
38019 GTGTCTTTTAGATTAAAGGTTAAATATCTTTGAGTAAATGACTAAATGTCTA-TCTGTGCATTTG
129 ATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGT-TGTGCATTTG
* * *
38083 GCAGAAAGGTTCCAATCATGCCAGTTAGATTAAAGGTTAAATACTTTTG
193 GAAGAAAGGTT-CAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTG
* * ** *
38132 AGTAAAAAGATTAAATGCCTAGCTGTTAATTT-GACA-AAAAGTTACCAATCATGCCAGTTAGAT
1 AGT-AAAAGACTAAATGCCTAGTTGTGCATTTGGA-AGAAAGGTT--CAATCATGCCAGTTAGAT
* * * * *
38195 GAAAGGTTAAATAACTTTGAGTAAAAGTCTAAATGACTAGTTGTGCTTTTGGCAGAAAAGTGTCA
62 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCA
*
38260 ATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGATGTGCATT
126 ATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATT
* * * **
38325 GGGCAGAAAGGTTCCAATCATGCCAGTTAGATGAAAGTTTAAATGTCTTTG
191 TGGAAGAAAGGTT-CAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTG
* * * * * *
38376 AGTAAAAGACTAAATGACTAGTTGTGCATTTGGTAGAAATGTGCCAATCATGCTAGTTATATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAA
* * * * * * * * *
38441 AGGTTAAATACCTTTGTGTAGAAGACTAAATGACTAGATGTACATTTGTCAAAAATGTGCCAATC
65 AGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAATC
* * * * * *
38506 ATGCCAGTTAGATGAATGGATAAATAACTTTGAGTAAAAGACTAAATTCCTAGATGTGTATTTGG
129 ATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGG
* * * * ** *
38571 TAGAAAGGTTTCAGTCATTCCAATTAGATGAAACCTTAAATA-CATTG
194 AAGAAAGG-TTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTG
* * * * *
38618 AGTAAAAGATTAAATGCCCAGCTGTGCATTT-GATAGAAATGTGTCAATCATGCCAGTTGGATGA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGA-AGAAAGGT-TCAATCATGCCAGTTAGATGA
* * * * * *
38682 GAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGCTT-TGTATTTTGCAGAAA-TTTTTAA
64 AAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA--TTGTGCATTTGGCAGAAAGGTGTCAA
* * * * *
38745 TCATGCCAGTTATATGAAAGGCTAAATATCTTTGAG-AAAATGACTAAAAGCATAGTTGTGCATT
127 TCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAA-GACTAAATGCCTAGTTGTGCATT
*
38809 TGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTG
191 TGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTG
* * * * * * * ** *
38860 AGTAAAAGACTATAT-CCACAGTTGTACATTTTGCAGAATGGTGTGAATCATGCCTTTTAGATTA
1 AGTAAAAGACTAAATGCC-TAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGA
* **
38924 AAGGTTAAATACCTTTGAGTAAATGACTAAATGCCTAACCGTGCATTTGGCAGAAAGGTGTCAAT
64 AAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCT-ATTGTGCATTTGGCAGAAAGGTGTCAAT
* * * * * *
38989 CATGCTAGATAGATGAAAGGTTAAATATCTTTGAGTAAAAGACTAATTGTCTAGCTGTGCATTTG
128 CATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTG
* * * * *
39054 GAA-AAAGGTGCCATGCATTCCAGTTGGATGAAAGGTTAAATAACTTTG
193 GAAGAAAGGTTCAAT-CATGCCAGTTAGATGAAAGGTTAAATACCTTTG
* * * * * * *
39102 AGTAAAAGTCTAAATGACTAGTTTTGCATTTAGCATAAAGGTGCCAATCATGCCAGTTAGATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAA
* * * * * *
39167 ATGTTAAATACCTTGGAGTAAAAGACTAAATGACTAGCTGTGCATTTGGTAGAAAGGTGCCAATC
65 AGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAATC
* * * * * *
39232 CTGCTAGTTATATGAAAGGTTAAATACCTTTGTGTAAAAGACTAAATGACTAGATGTGCATTTGG
129 ATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGG
* *
39297 CAA-AAAGGTGCCAATCATGCCAGTTAGATGAAAGGTTAAATAACTTTG
194 -AAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTG
* *
39345 AGTAAAAGACTAAATGCCTAGATGTGCATTTGGAAGAAAGGTTCCAATCATGCCAATTAGATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGTT-CAATCATGCCAGTTAGATGAA
* * * *
39410 AGGTTAAATATCTTTGAGTAAAAGAATAAATGCCTAGTTGTGCATTTGGTAGAAATGTGTCAATC
65 AGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAATC
* * * *
39475 ATGCCAATTAGATGAATGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGCTT-TGTATTTT
129 ATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG-TTGTGCATTTG
* * * * *
39539 GCAGAAAGTTGTCAATCATGTCAGTTATATGAAAGGCTAAATACCTTTG
193 GAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTG
** * * *
39588 AGTAAAAGACTAAATGAATAGTTGTGCATTTGGCAGAAAGGTGTCAATAATGACAGTTAGATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAA
* * * * * * * *
39653 AGGTTAAATACCTATGAGTAAAAGACTTAATGCATAGTTTTACATTTTGCAGAATGGTGTGAATC
65 AGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAATC
* * ** * * *
39718 GTGTCTTTTAGATTAAAGGTTAAATACCTTTGAGTAAATGACTAAATGTCTA-TCTGTGCATTTG
129 ATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGT-TGTGCATTTG
* * *
39782 GCAGAAAGGTTCCAATCATGCCAGTTAGATTAAAGGTTAAATACTTTTG
193 GAAGAAAGGTT-CAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTG
* * ** *
39831 AGTAAAAGATTAAATGCCTAGCTGTTAATTT-GACA-AAAAGTTACCAATCATGCCAGTTAGATG
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGA-AGAAAGGTT--CAATCATGCCAGTTAGATG
* * * * *
39894 AAAGGTTAAATAACTTTGAGTAAAAGTCTAAATGACTAGTTGTGCTTTTGGCAGAAAAGTGTCAA
63 AAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAA
* *
39959 TCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGTCTAGTTGTCCATTT
127 TCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTT
* * * * *
40024 GGTAA-AAATGTGCCAATCAAGCTAGTTATATGAAAGGTTAAATACCTTTG
192 GG-AAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTG
* * * * *
40074 TGTAGAAGACTAAAT-CACTA-TATGTGCATTTGGTACAAAGGTGCCAATCATGCCAGTTAGATG
1 AGTAAAAGACTAAATGC-CTAGT-TGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATG
* * * **
40137 AAAGGTTAAATAACATTGAGTAAAAGACTAAATGCCTAGCTGTGCATTTGGCAGAAAGGTACCAA
63 AAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAA
* *
40202 TCTTGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGCTGTGCATTT
127 TCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTT
*
40267 GGCAGAAAGGTATCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTG
192 GGAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTG
* * *
40317 AGTAAAAGACTAAATGCCTAGATGTGCATTGGGCAGAAAGGTTCCAATCATGCCAGTTAGATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGTT-CAATCATGCCAGTTAGATGAA
* * * * * *
40382 AGTTTAAATGCCTTTGAGTAAAAGACTAAATGACTAGTTGTGCATTTGGTAGAAATGTGCCAATC
65 AGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAATC
* * * * * *
40447 ATGCTAGTTATATGAAAGGTTAAATACCTTTGTGTAGAAGACTAAATGACTAGATGTGCATTTGT
129 ATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTG-
* * * * *
40512 CAA-AAATGTGCCAATCATGCCAGTTAGATGAAAGGATAAATAACTTTG
193 GAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTG
* * * * * *
40560 AGTAAAAGACTAAATTCCTAGATGTGCATTTGGTAGAAAGGTTTCAGTCATTCCAATTAGATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGG-TTCAATCATGCCAGTTAGATGAA
** * * * * ** *
40625 ACCTTAAATA-CATTGAGTAAAAGATTAAATGCCCAGCTGTGCATTTGATAGAAATGTGTCAATC
65 AGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAATC
* * * * *
40689 ATGGCAGTTGGATGAGAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGCTT-TGTATTTT
129 ATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG-TTGTGCATTTG
* ** * * * *
40753 GCAGAAATTTTTAATCATGCCAGTTATATGAAAGGCTAAATATCTTTG
193 GAAGAAAGGTTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTG
* * *
40801 AG-AAAATGACTAAAAGCATAGTTGTGCATTTGGCAGAAAGGTGTCAATCATGCCAGTTAGATGA
1 AGTAAAA-GACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT-TCAATCATGCCAGTTAGATGA
* * * * * *
40865 AAGGTTAAATACCTTTGAGTAAAAGACTATAT-CCACAGTTGTACATTTTGCAGAATGGTGTGAA
64 AAGGTTAAATACCTTTGAGTAAAAGACTAAATGCC-TA-TTGTGCATTTGGCAGAAAGGTGTCAA
** * *
40929 TCATGCCTTTTAGATTAAAGGTTAAATACCTTTGAGTAAATGACTAAATGCCTA-TCTGTGCATT
127 TCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGT-TGTGCATT
* * *
40993 TGGCAGAAAGGTGTCAATCATGCCAGTTAGATGAAAGTTTAAATACTTTTG
191 TGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTG
* * * *
41044 AGTAAAAGATTAAATGCCTAGCTGTGCATTTGGCAA-AAAGGTACCAATCATGCCAATTAGATGA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGG-AAGAAAGGT-TCAATCATGCCAGTTAGATGA
* * * * * *
41108 AAGGTTAAATAACTTTGAGTAAAAGTCTAAATGACTAGTTGTGCTTTTGGCATAAAAGTGTCAAT
64 AAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAAT
* * * *
41173 CAAGCCACTTAGATGAAATGTTAAATACCTTTGAGTAAAAGACTAAATGTCTAGTTGTGCATTTG
128 CATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTG
* * * *
41238 GTAA-AAAGGTACCAATTATGCTAGTTATATGAAAGGTTAAATACCTTTG
193 G-AAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTG
* * * * * *
41287 TGTAGAAGACTAAAT-CACTAGATGTGCATTTGG-TGAAAATGTGCCAATCATGCCAGTTAGATG
1 AGTAAAAGACTAAATGC-CTAGTTGTGCATTTGGAAG-AAAGGT-TCAATCATGCCAGTTAGATG
* *
41350 AAAGGTTAAATAACTTTGAGTAAAAGACTAAATGCCTAGCTT-TGCATTTGGCAGAAAGGTGCCA
63 AAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA--TTGTGCATTTGGCAGAAAGGTGTCA
* *
41414 ATCTTTCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATT
126 ATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATT
* * *
41479 TGGCAGAAAGGTGTCAATCATGCCAGTTAGATGTATGGTTAAATACCTTTG
191 TGGAAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTG
* * * *
41530 AGTAAAAGACTAAATGCCTAGATGTGCATTGGGCAGAAAGGTTCCAATCATGTCAGTTAGATGAA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGTT-CAATCATGCCAGTTAGATGAA
* * * *
41595 AGTTTAAATGCCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTTGCAGAAAGGTGCCAATC
65 AGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTGTCAATC
* * * *
41660 ATGCCAATTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCATAGTTGTGTATTTTG
129 ATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGG
* *
41725 CAGAAAGGTGTTAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTG
194 AAGAAAGGT-TCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTG
* ** * * * **
41773 AGTAAAATACTAAATGAATAGCTGTGCATTTGGTAGAAAGGTGAT-AACCATGTTAGTTAGATGA
1 AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGT--TCAATCATGCCAGTTAGATGA
*
41837 AAGGTTAAATGCCTTT
64 AAGGTTAAATACCTTT
41853 AGAGGTTAAA
Statistics
Matches: 10857, Mismatches: 1801, Indels: 506
0.82 0.14 0.04
Matches are distributed among these distances:
214 1 0.00
215 9 0.00
216 138 0.01
217 3 0.00
218 2 0.00
220 6 0.00
222 1 0.00
224 6 0.00
225 2 0.00
227 1 0.00
228 1 0.00
229 5 0.00
230 7 0.00
231 193 0.02
232 2 0.00
234 2 0.00
235 7 0.00
236 1 0.00
237 1 0.00
239 7 0.00
240 11 0.00
241 220 0.02
242 1899 0.17
243 7786 0.72
244 523 0.05
245 23 0.00
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.30
Consensus pattern (240 bp):
AGTAAAAGACTAAATGCCTAGTTGTGCATTTGGAAGAAAGGTTCAATCATGCCAGTTAGATGAAA
GGTTAAATACCTTTGAGTAAAAGACTAAATGCCTATTGTGCATTTGGCAGAAAGGTGTCAATCAT
GCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGAA
GAAAGGTTCAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTG
Found at i:32953 original size:54 final size:54
Alignment explanation
Indices: 32890--32997 Score: 180
Period size: 54 Copynumber: 2.0 Consensus size: 54
32880 CCAGTTAGAT
* *
32890 GAAAGGTTAAATACCTTTGACTAAAAGACTAAATTCATAGTTATGCATTTGGCA
1 GAAAGGTTAAATACCATTGACTAAAAGACTAAATGCATAGTTATGCATTTGGCA
* *
32944 GAAAGGTTAAATACCATTGAGTAAAAGACTAAATGCATAGTTGTGCATTTGGCA
1 GAAAGGTTAAATACCATTGACTAAAAGACTAAATGCATAGTTATGCATTTGGCA
32998 AAATGGTGTG
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 50 1.00
ACGTcount: A:0.39, C:0.12, G:0.19, T:0.30
Consensus pattern (54 bp):
GAAAGGTTAAATACCATTGACTAAAAGACTAAATGCATAGTTATGCATTTGGCA
Found at i:33051 original size:135 final size:134
Alignment explanation
Indices: 32809--33086 Score: 371
Period size: 135 Copynumber: 2.1 Consensus size: 134
32799 ATAGTTAGAT
* * * * * *
32809 GAAAGGTTAAACACCTTTGATTAAAAGATTAAATGCCTAGATTTGTATTTTGCAAAAAGGTGTCA
1 GAAAGGTTAAACACCATTGAGTAAAAGACTAAATGCATAGATTTGCATTTGGCAAAAAGGTGTCA
* * *
32874 ATGATGCCAGTTAGATGAAAGGTTAAATACCTTTGACTAAAAGACTAAATTCATAGTTA-TGCAT
66 ATCATGCCAGTTAGATGAAAGGTTAAATACATTTGACTAAAAGACTAAATGCATA--TACTGCAT
32938 TTGGCA
129 TTGGCA
* * *
32944 GAAAGGTTAAATACCATTGAGTAAAAGACTAAATGCATAG-TTGTGCATTTGGCAAAATGGTGTG
1 GAAAGGTTAAACACCATTGAGTAAAAGACTAAATGCATAGATT-TGCATTTGGCAAAAAGGTGTC
* * *
33008 AATCATGCCAGTTAGATTAAAGGTTAAATACATTTGAGTAAAAGACTAAATGCTTATACGTGCAT
65 AATCATGCCAGTTAGATGAAAGGTTAAATACATTTGACTAAAAGACTAAATGCATATAC-TGCAT
33073 TTGGCA
129 TTGGCA
33079 GAAAGGTT
1 GAAAGGTT
33087 CCAATCAAGC
Statistics
Matches: 125, Mismatches: 15, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
133 2 0.02
134 2 0.02
135 121 0.97
ACGTcount: A:0.38, C:0.11, G:0.21, T:0.31
Consensus pattern (134 bp):
GAAAGGTTAAACACCATTGAGTAAAAGACTAAATGCATAGATTTGCATTTGGCAAAAAGGTGTCA
ATCATGCCAGTTAGATGAAAGGTTAAATACATTTGACTAAAAGACTAAATGCATATACTGCATTT
GGCA
Found at i:33093 original size:81 final size:79
Alignment explanation
Indices: 32944--41852 Score: 9041
Period size: 81 Copynumber: 110.2 Consensus size: 79
32934 GCATTTGGCA
* * *
32944 GAAAGGTTAAATACCATTGAGTAAAAGACTAAATGCATAGTTGTGCATTTGGCA-AAATGGTGTG
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAA-GGT-TC
33008 AATCATGCCAGTTAGAT
63 AATCATGCCAGTTAGAT
* * * *
33025 TAAAGGTTAAATACATTTGAGTAAAAGACTAAATGCTTATACGTGCATTTGGCAGAAAGGTTCCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAT-TGTGCATTTGGCAGAAAGGTT-CA
*
33090 ATCAAGCCAGTTAGAT
64 ATCATGCCAGTTAGAT
* * * *
33106 AAAAGGTCAAA-ACCTTTTGAGTAAAAGACTAAATGTCTAGTTGAGCATTTGGCAGAAAGGTGTC
1 GAAAGGTTAAATACC-TTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGT-TC
33170 AATCATGCCAGTTAGAT
63 AATCATGCCAGTTAGAT
* * * * *
33187 GAAAGGTTAAATACCTTTAAATAAAAGGCTAAATGCCTAGATATGCATTTGGCAGAAAGGTGTCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGT-TCA
* *
33252 ATCATGCCACTTAAAT
64 ATCATGCCAGTTAGAT
* * * * *
33268 GAAAGGTAAAATACCTTTGAGTAAAAGACTAAATGTCTAGTTGTGCTTTTGGCAAAAATGTGTCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGT-TCA
* **
33333 ATCATGCTAGTTTCAT
64 ATCATGCCAGTTAGAT
* * * * * * *
33349 GAAAGGTTAAATCCCTTTAAGTAAAAGACTTAATGCCTAAATATGCATTTGGTAGAAAGGTGGCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCT-ATTGTGCATTTGGCAGAAAGGT-TCA
33414 ATCATGCCAGTTAGAT
64 ATCATGCCAGTTAGAT
* * * *
33430 GAAAGGTTAAATACCTTTGAATAACAGATTAAATGCCTAGTTGTGCATTTGGCAGGAAGGTGTCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGT-TCA
*
33495 ATCATGCCAGTTAGAC
64 ATCATGCCAGTTAGAT
* * * * * * *
33511 GAAAGGTTAAACATCTTTGAGTAAAAGATTAAATGCCTAGATGTGTATTTTGCAAAAAGGGTTCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAA-GGTTCA
*
33576 ATCATGCCAGCTAGAT
64 ATCATGCCAGTTAGAT
** * * * * * *
33592 GAAAGGTTAAATATATTTAAGTAAAAGACTAAATTCATAGTTTTGCATTTGGAAGAAAGGTACCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGT-TCA
33657 ATCATGCCAGTTAGAT
64 ATCATGCCAGTTAGAT
* ** * *
33673 GAAAGGTTAAATACCTTGGAGTAAAAGACTAAATGTATAGTTGTGCATATGGCAGAAAGGTGCAA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTTC-A
33738 ATCATGCCAGTTAGAT
64 ATCATGCCAGTTAGAT
* * * * **
33754 GAAAGATTAAATACTTTTTAGTAAAAGACTAAATGTCTATCTGTGCATTTGTTAGAAAGGTGTCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAT-TGTGCATTTGGCAGAAAGGT-TCA
33819 ATCATGCCAGTTAGAT
64 ATCATGCCAGTTAGAT
* ** * * *
33835 GAAAAGTTAAATACCTTTGAGTAAAATTCTGAATGACTAGTTGTGCATTTGGCAGAAAGGTGCCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGT-TCA
*
33900 ATCAAGCCAGTTAGAT
64 ATCATGCCAGTTAGAT
* * * * *
33916 TAAAGGTTAAATAACTTTGAGTAAAAGACTAAATGTCTAGTTGTGCATTTGGTAGAAATGTGTCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGT-TCA
* *
33981 ATCATGTCGGTTAGAT
64 ATCATGCCAGTTAGAT
* * * *
33997 GAAAGGTTAAAT--CTCTTGAGTAAAAGATTAAATGCCTAGCTGTGCATTTGGTAGAAATGTGTC
1 GAAAGGTTAAATACCT-TTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGT-TC
*
34060 AATCATGCCAGTTGGAT
63 AATCATGCCAGTTAGAT
* * * ** * *
34077 GAAAGGTTAAATAACTTTTAGTAAAAGTCTAAATGCCTAGAAGTACATTTGGAAGAAAGGTTCCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTT-CA
*
34142 ATCATGCCAATTAGAT
64 ATCATGCCAGTTAGAT
* * * * *
34158 GAAAGGTTAAATATCTTTGAGTAAAAGAATAAATGCCTAGCTGTGCATTTGGTAGAAATGTGTCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGT-TCA
34223 ATCATGCCAGTTAGAT
64 ATCATGCCAGTTAGAT
* * * *
34239 GAATGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGCTT-TGTATTTTGCAGAAAGTTGTC
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA--TTGTGCATTTGGCAGAAAGGT-TC
* *
34303 AATCATGTCAGTTATAT
63 AATCATGCCAGTTAGAT
* ** * *
34320 GAAAGGCTAAATACCTTTGAGTAAAAGACTAAATGAATAGTTATGCATTTGGGAGAAAGGTATCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGT-TCA
34385 ATCATGCCAGTTAGAT
64 ATCATGCCAGTTAGAT
* * * *
34401 GAAAGGTTAAATACCTTTGAGTAAAAGAATATATGCATAGTTGTGCATTTGGCAGAAAGGTGTGA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGT-TCA
34466 ATCATGCCAGTTAGAT
64 ATCATGCCAGTTAGAT
* * ** * ** *
34482 TAATGGTTAAATATTTTTGGGTAAAAGACTAAATTTCTATCTGTGCATTTGGCAGAAAGGTGCCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAT-TGTGCATTTGGCAGAAAGGT-TCA
*
34547 ATCATGCCAGTTATAT
64 ATCATGCCAGTTAGAT
* * ** * * *
34563 GAAAGGTCAAATACCTTTGAGTAAAAGAATAAATATCTAGTTATGCATTTGACAGAATGGTGTCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGT-TCA
*
34628 ACCATGCCAGTTAGAT
64 ATCATGCCAGTTAGAT
* *
34644 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGATGTGCATTTGGAAGAAAGGTGTCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGT-TCA
34709 ATCATGCCAGTTAGAT
64 ATCATGCCAGTTAGAT
* * * *
34725 GAAAGGTCAAATACCTTTGAGTAAAAGACTAAATGTCTAGTTGTGCATTTGGAAAAAAGGTGTCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGT-TCA
*
34790 ATCATGCTAGTTAGAT
64 ATCATGCCAGTTAGAT
* * * * *
34806 GAAACGTTAAATAACTTTGAGTAAAAGACTTAATGCCTAGATGTGCATTTGGTAGAAAGGTGTCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGT-TCA
*
34871 ATCATGCTAGTTAGAT
64 ATCATGCCAGTTAGAT
* * * * * * *
34887 GAAAGGTTAAACACCTTTGTGTAAAAGATTAAATGCCTAGATGTGTATTTTGCAAAAAGGTGTCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGT-TCA
*
34952 ATGATGCCAGTTAGAT
64 ATCATGCCAGTTAGAT
* * * *
34968 GAAAGGTTAAATACCTTTGACTAAAAGACCAAATGCATAGTTATGCATTTGGCAGAAAGGTTCCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTT-CA
* * * *
35033 CTTAGGCCTGTTAGAT
64 ATCATGCCAGTTAGAT
* * * *
35049 GAAAGGTTAAATACCATTGAGTAAAAGACTAAATGCATAGTTGTGCATTTGGCAAAAAGGTGTGA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGT-TCA
35114 ATCATGCCAGTTAGAT
64 ATCATGCCAGTTAGAT
* ** * *
35130 TAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGTTTATACGTGCATTTGGCAGAAAGGTGCCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAT-TGTGCATTTGGCAGAAAGGT-TCA
35195 ATCATGCCAGTTAGAT
64 ATCATGCCAGTTAGAT
* * * *
35211 AAAAGGTTAAAAACCTTTGAGTAAAAGACTAAAAGTCTAGTTGTGCATTTGGCAGAAAGGTGTCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGT-TCA
35276 ATCATGCCAGTTAGAT
64 ATCATGCCAGTTAGAT
* * * * * * ** *
35292 GAAATGTGAAATACCTTTAAGTAAAAGACTAAATGCCTAGATATGTATTTGGCATTAAGGTGCCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGT-TCA
*
35357 ATGATGCCAGTTAGAT
64 ATCATGCCAGTTAGAT
** * * * *
35373 GAATTGTAAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTATGCTTTTGGCA-AAATTGTGTC
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAA-GGT-TC
35437 AATCATGCCAGTTCA-AT
63 AATCATGCCAGTT-AGAT
* * * * * * *
35454 GAAAGGTTAAATCCCTTTAAGTAAAAGTCTTAATCCCTAAATGTGCATTTGGTAGAAAGGTGTCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCT-ATTGTGCATTTGGCAGAAAGGT-TCA
35519 ATCATGCCAGTTAGAT
64 ATCATGCCAGTTAGAT
* * * * *
35535 GAAATGTTATATACCTTTGAGTAACAGATTAAATGCCTAGTTGTGCATTTGGCATAAAGGTGTCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGT-TCA
*
35600 ATCATGCCAGTTAGAC
64 ATCATGCCAGTTAGAT
* * * * * *
35616 GAAAGGTTAAACACCTTTGAGTAAAAGATTAAATGCCTAGATGTGTATTTTGCAAAAAGGTGTCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGT-TCA
*
35681 ATCATGCCAGCTAGAT
64 ATCATGCCAGTTAGAT
* ** * * * * *
35697 GAAATGTTAAATATATTTAAGTAAAAGACTAAATGCATAGTTTTGCATTTGGAAGAAAGGTACCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGT-TCA
35762 ATCATGCCAGTTAGAT
64 ATCATGCCAGTTAGAT
* * * * *
35778 GAAAGGTTAAATACCTTGGAGTAAAAGACTAAATACATAGTTGTACATTTGGCAGAAAGGTGCAA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTTC-A
* *
35843 ATAATGTCA-TATAGAT
64 ATCATGCCAGT-TAGAT
* * * * **
35859 GAAAGGTTAAATTCCTTTTAGTAAAACACTAAATGTCTATCTGTGCATTTGTTAGAAAGGTTTCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAT-TGTGCATTTGGCAGAAAGG-TTCA
35924 ATCATGCCAGTTAGAT
64 ATCATGCCAGTTAGAT
* * * * *
35940 GAAAAGTTAAATACCATTGAGTAAAAGACTAATTGCCTAGCTGTGCATTTTGG-AAAAAGGTGTC
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCA-TTTGGCAGAAAGGT-TC
*
36004 AATCATGCCAGTTAGTT
63 AATCATGCCAGTTAGAT
* * * * * *
36021 GACAGGTTAAATACCTTTGAGTAAAAGTCTGAATGACTAGCTGTGCATTTGGCAGAAAGGTGCCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGT-TCA
*
36086 ATCAAGCCAGTTAGAT
64 ATCATGCCAGTTAGAT
* * * * * * *
36102 GAAAGGTTAAATAACTTTGACTAAAAGACTAAATGTCTAGCTGTGCATTTGGTAGAAATGTGCCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGT-TCA
36167 ATCATGCCAGTTAGAT
64 ATCATGCCAGTTAGAT
* * * * *
36183 GAAAGGTTAAATACC-TTGACTAAAAGATTAAATGCCTAGCTGTGCATTTGGTAGAAATGTTTCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAA-GGTTCA
* *
36247 ATAATGCCAGTTGGAT
64 ATCATGCCAGTTAGAT
* * * * * *
36263 GAAAGGTTAAATAACTTTTAGTAAAAGACTAAATGCCTAGATGTACATTTGGAAGAAAGCTTTCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAG-GTTCA
*
36328 ATCATGCCAATTAGAT
64 ATCATGCCAGTTAGAT
* * * * * *
36344 GAAAGGTTAAATATCTTTGAGTAAAAGAATAAATGCCTAGCTGTGCATTTGGTATAAATGTGTCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGT-TCA
*
36409 ATCATGTCAGTTAGAT
64 ATCATGCCAGTTAGAT
* * * * *
36425 GAATGGTTAAATACCTTTGAGTAAAAGACTAAATACCTAGCTT-TGTATTTTGTAGAAA-G----
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA--TTGTGCATTTGGCAGAAAGGTTCA
*
36484 --CA----AGTTATAT
64 ATCATGCCAGTTAGAT
* * *
36494 GAAAGGCTAAATACCTTTGAGTAAAAGACTAAATGCATAGTTATGCATTTGGCAGAAAGGTGTCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGT-TCA
**
36559 ATCATGCTTGTTAGAT
64 ATCATGCCAGTTAGAT
* * * *
36575 GAAAAGTTAAATACCTTTGAGTAAAAGACTAAATGCATAGTTGTGCATTTGGAAGAAAGGTGTGA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGT-TCA
36640 ATCATGCCAGTTAGAT
64 ATCATGCCAGTTAGAT
* *
36656 TAAAGGTTAAATACCTTTGAGTAAAATACTAAATGCCTATTTGTGCATTTGGCAGAAAGGTGTCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGT-TCA
*
36721 GTCATGCCAGTTAGAT
64 ATCATGCCAGTTAGAT
* * ** *
36737 GAAATGTCAAATACCTTTGAGTAAAAGACTAAATTTCTAGTTGTGCATTTGGTAGAAAGGTGTCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGT-TCA
*
36802 ATCAAGCCAGTTAGA-
64 ATCATGCCAGTTAGAT
* * * * *
36817 AAAAGGTTAAATACCTTTGAGTAAAATACTAAATGCCTAGTTGTGTATTTTGCATAAATGTGTT-
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAA-G-GTTC
36881 AATCATGCCAGTTAGAT
63 AATCATGCCAGTTAGAT
* * * *
36898 GAAAGCTTAAATACCTTTAAGTAAAAGATTAAATGCCTAGTTGTGCATTTGGCAGAAATATGTT-
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAG-AA-AGGTTC
*
36962 AATCATGTCAGTTAGAT
63 AATCATGCCAGTTAGAT
* * * * * * ** *
36979 GAAAGGTTAAACACCTTTGAATAAAAGATTAATTACCTAGATGTTTATTTTGCAGAAAGGTGTCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGT-TCA
* * *
37044 ACCATGCCACTTACAT
64 ATCATGCCAGTTAGAT
* * * * * * * * * *
37060 GAAAGGTTAAATACATTTCAGTAAAATACTAATTGCATAGTTATGCATTTGGAATAAATGTGCCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGT-TCA
* *
37125 ATCATGCAAGTTATAT
64 ATCATGCCAGTTAGAT
** * * * * *
37141 GAAATTTTAAATACCTTTGTGTAAAAGAATAAATGCATAGTTGTGCATCTGGCAGAAAGGTGTAA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGT-TCA
37206 ATCATGCCAGTTAGAT
64 ATCATGCCAGTTAGAT
* **
37222 TAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAACCGTGCATTTGGCAGAAAGGTGTCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCT-ATTGTGCATTTGGCAGAAAGGT-TCA
* *
37287 ATCATGCTAGATAGAT
64 ATCATGCCAGTTAGAT
* * * * * * * * *
37303 GAAAGGTTAAATATCTTTGAGTAAAAGACTAATTGTCTAGATGTTCATTTGGAAAAAAGGTGCCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTTCAA
* *
37368 TGCATTCCAGTTGGAT
65 T-CATGCCAGTTAGAT
* * * * * * *
37384 GAAAGGTTAAATAACTTTGAGTAAAAGTCTAAATGACTAGTTTTGCATTTAGCATAAAGGTGCCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGT-TCA
37449 ATCATGCCAGTTAGAT
64 ATCATGCCAGTTAGAT
* * * * * *
37465 GAAATGTTAAATACCTTGGAGTAAAAGACTAAATGACTAGCTGTGCATTTGGTAGAAAGGTGCCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGT-TCA
* *
37530 ATCATGCTAGTTATAT
64 ATCATGCCAGTTAGAT
* * * * *
37546 GAAAGGTTAAATACCTTTGTGTAAAAGACTAAATGACTAGATGTGCATTTGGCAAAAAGGTGCCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGT-TCA
37611 ATCATGCCAGTTAGAT
64 ATCATGCCAGTTAGAT
* * *
37627 GAAAGGTTAAATAACTTTGAGTAAAAGACTAAATGCCTAGATGTGCATTTGGAAGAAAGGTTCCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTT-CA
*
37692 ATCATGCCAATTAGAT
64 ATCATGCCAGTTAGAT
* * * * *
37708 GAAAGGTTAAATATCTTTGAGTAAAAGAATAAATGCCTAGCTGTGCATTTGGTAGAAATGTGTCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGT-TCA
*
37773 ATCATGCCAATTAGAT
64 ATCATGCCAGTTAGAT
* * *
37789 GAATGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGCTT-TGTATTTTGCAGAAA-GTTGA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA--TTGTGCATTTGGCAGAAAGGTT--
* *
37852 CAATCATGTCAGTTATAT
62 CAATCATGCCAGTTAGAT
* **
37870 GAAAGGCTAAATACCTTTGAGTAAAAGACTAAATGAATAGTTGTGCATTTGGCAGAAAGGTGTCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGT-TCA
*
37935 ATAATGCCAGTTAGAT
64 ATCATGCCAGTTAGAT
* * * * * * * *
37951 GAAAGGTTAAATACCTATGAGTAAAAGACTTAATGCATAGTTTTACATTTTGCAGAATGGTGTGA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGT-TCA
* * **
38016 ATCGTGTCTTTTAGAT
64 ATCATGCCAGTTAGAT
* * * *
38032 TAAAGGTTAAATATCTTTGAGTAAATGACTAAATGTCTATCTGTGCATTTGGCAGAAAGGTTCCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAT-TGTGCATTTGGCAGAAAGGTT-CA
38097 ATCATGCCAGTTAGAT
64 ATCATGCCAGTTAGAT
* * * * ** * *
38113 TAAAGGTTAAATACTTTTGAGTAAAAAGATTAAATGCCTAGCTGTTAATTTGACA-AAAAGTTAC
1 GAAAGGTTAAATACCTTTGAGT-AAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTT--
38177 CAATCATGCCAGTTAGAT
62 CAATCATGCCAGTTAGAT
* * * * *
38195 GAAAGGTTAAATAACTTTGAGTAAAAGTCTAAATGACTAGTTGTGCTTTTGGCAGAAAAGTGTCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGT-TCA
38260 ATCATGCCAGTTAGAT
64 ATCATGCCAGTTAGAT
* *
38276 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGATGTGCATTGGGCAGAAAGGTTCCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTT-CA
38341 ATCATGCCAGTTAGAT
64 ATCATGCCAGTTAGAT
* ** * * * *
38357 GAAAGTTTAAATGTCTTTGAGTAAAAGACTAAATGACTAGTTGTGCATTTGGTAGAAATGTGCCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGT-TCA
* *
38422 ATCATGCTAGTTATAT
64 ATCATGCCAGTTAGAT
* * * * * * * * *
38438 GAAAGGTTAAATACCTTTGTGTAGAAGACTAAATGACTAGATGTACATTTGTCAAAAATGTGCCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGT-TCA
38503 ATCATGCCAGTTAGAT
64 ATCATGCCAGTTAGAT
* * * * * * *
38519 GAATGGATAAATAACTTTGAGTAAAAGACTAAATTCCTAGATGTGTATTTGGTAGAAAGGTTTCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGG-TTCA
* * *
38584 GTCATTCCAATTAGAT
64 ATCATGCCAGTTAGAT
** * * * * ** *
38600 GAAACCTTAAATA-CATTGAGTAAAAGATTAAATGCCCAGCTGTGCATTTGATAGAAATGTGTCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGT-TCA
*
38664 ATCATGCCAGTTGGAT
64 ATCATGCCAGTTAGAT
* * * ** *
38680 GAGAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGCTT-TGTATTTTGCAGAAATTTTTA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA--TTGTGCATTTGGCAGAAAGGTTCA
*
38744 ATCATGCCAGTTATAT
64 ATCATGCCAGTTAGAT
* * * *
38760 GAAAGGCTAAATATCTTTGAG-AAAATGACTAAAAGCATAGTTGTGCATTTGGCAGAAAGGTGTC
1 GAAAGGTTAAATACCTTTGAGTAAAA-GACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGT-TC
38824 AATCATGCCAGTTAGAT
63 AATCATGCCAGTTAGAT
* * * * * *
38841 GAAAGGTTAAATACCTTTGAGTAAAAGACTATAT-CCACAGTTGTACATTTTGCAGAATGGTGTG
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCC-TA-TTGTGCATTTGGCAGAAAGGT-TC
**
38905 AATCATGCCTTTTAGAT
63 AATCATGCCAGTTAGAT
* * **
38922 TAAAGGTTAAATACCTTTGAGTAAATGACTAAATGCCTAACCGTGCATTTGGCAGAAAGGTGTCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCT-ATTGTGCATTTGGCAGAAAGGT-TCA
* *
38987 ATCATGCTAGATAGAT
64 ATCATGCCAGTTAGAT
* * * * * * *
39003 GAAAGGTTAAATATCTTTGAGTAAAAGACTAATTGTCTAGCTGTGCATTTGG-AAAAAGGTGCCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTTCAA
* *
39067 TGCATTCCAGTTGGAT
65 T-CATGCCAGTTAGAT
* * * * * * *
39083 GAAAGGTTAAATAACTTTGAGTAAAAGTCTAAATGACTAGTTTTGCATTTAGCATAAAGGTGCCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGT-TCA
39148 ATCATGCCAGTTAGAT
64 ATCATGCCAGTTAGAT
* * * * * *
39164 GAAATGTTAAATACCTTGGAGTAAAAGACTAAATGACTAGCTGTGCATTTGGTAGAAAGGTGCCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGT-TCA
* * *
39229 ATCCTGCTAGTTATAT
64 ATCATGCCAGTTAGAT
* * * * *
39245 GAAAGGTTAAATACCTTTGTGTAAAAGACTAAATGACTAGATGTGCATTTGGCAAAAAGGTGCCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGT-TCA
39310 ATCATGCCAGTTAGAT
64 ATCATGCCAGTTAGAT
* * *
39326 GAAAGGTTAAATAACTTTGAGTAAAAGACTAAATGCCTAGATGTGCATTTGGAAGAAAGGTTCCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTT-CA
*
39391 ATCATGCCAATTAGAT
64 ATCATGCCAGTTAGAT
* * * *
39407 GAAAGGTTAAATATCTTTGAGTAAAAGAATAAATGCCTAGTTGTGCATTTGGTAGAAATGTGTCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGT-TCA
*
39472 ATCATGCCAATTAGAT
64 ATCATGCCAGTTAGAT
* * * *
39488 GAATGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGCTT-TGTATTTTGCAGAAAGTTGTC
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA--TTGTGCATTTGGCAGAAAGGT-TC
* *
39552 AATCATGTCAGTTATAT
63 AATCATGCCAGTTAGAT
* **
39569 GAAAGGCTAAATACCTTTGAGTAAAAGACTAAATGAATAGTTGTGCATTTGGCAGAAAGGTGTCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGT-TCA
* *
39634 ATAATGACAGTTAGAT
64 ATCATGCCAGTTAGAT
* * * * * * * *
39650 GAAAGGTTAAATACCTATGAGTAAAAGACTTAATGCATAGTTTTACATTTTGCAGAATGGTGTGA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGT-TCA
* * **
39715 ATCGTGTCTTTTAGAT
64 ATCATGCCAGTTAGAT
* * *
39731 TAAAGGTTAAATACCTTTGAGTAAATGACTAAATGTCTATCTGTGCATTTGGCAGAAAGGTTCCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAT-TGTGCATTTGGCAGAAAGGTT-CA
39796 ATCATGCCAGTTAGAT
64 ATCATGCCAGTTAGAT
* * * * ** * *
39812 TAAAGGTTAAATACTTTTGAGTAAAAGATTAAATGCCTAGCTGTTAATTTGACA-AAAAGTTACC
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTT--C
39876 AATCATGCCAGTTAGAT
63 AATCATGCCAGTTAGAT
* * * * *
39893 GAAAGGTTAAATAACTTTGAGTAAAAGTCTAAATGACTAGTTGTGCTTTTGGCAGAAAAGTGTCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGT-TCA
39958 ATCATGCCAGTTAGAT
64 ATCATGCCAGTTAGAT
* * * * * *
39974 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGTCTAGTTGTCCATTTGGTAAAAATGTGCCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGT-TCA
* * *
40039 ATCAAGCTAGTTATAT
64 ATCATGCCAGTTAGAT
* * * * *
40055 GAAAGGTTAAATACCTTTGTGTAGAAGACTAAAT-CACTATATGTGCATTTGGTACAAAGGTGCC
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGC-CTAT-TGTGCATTTGGCAGAAAGGT-TC
40119 AATCATGCCAGTTAGAT
63 AATCATGCCAGTTAGAT
* * * *
40136 GAAAGGTTAAATAACATTGAGTAAAAGACTAAATGCCTAGCTGTGCATTTGGCAGAAAGGTACCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGT-TCA
*
40201 ATCTTGCCAGTTAGAT
64 ATCATGCCAGTTAGAT
*
40217 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGCTGTGCATTTGGCAGAAAGGTATCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGT-TCA
40282 ATCATGCCAGTTAGAT
64 ATCATGCCAGTTAGAT
* *
40298 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGATGTGCATTGGGCAGAAAGGTTCCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTT-CA
40363 ATCATGCCAGTTAGAT
64 ATCATGCCAGTTAGAT
* * * * * *
40379 GAAAGTTTAAATGCCTTTGAGTAAAAGACTAAATGACTAGTTGTGCATTTGGTAGAAATGTGCCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGT-TCA
* *
40444 ATCATGCTAGTTATAT
64 ATCATGCCAGTTAGAT
* * * * * * * *
40460 GAAAGGTTAAATACCTTTGTGTAGAAGACTAAATGACTAGATGTGCATTTGTCAAAAATGTGCCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGT-TCA
40525 ATCATGCCAGTTAGAT
64 ATCATGCCAGTTAGAT
* * * * *
40541 GAAAGGATAAATAACTTTGAGTAAAAGACTAAATTCCTAGATGTGCATTTGGTAGAAAGGTTTCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGG-TTCA
* * *
40606 GTCATTCCAATTAGAT
64 ATCATGCCAGTTAGAT
** * * * * ** *
40622 GAAACCTTAAATA-CATTGAGTAAAAGATTAAATGCCCAGCTGTGCATTTGATAGAAATGTGTCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGT-TCA
* *
40686 ATCATGGCAGTTGGAT
64 ATCATGCCAGTTAGAT
* * * ** *
40702 GAGAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGCTT-TGTATTTTGCAGAAATTTTTA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA--TTGTGCATTTGGCAGAAAGGTTCA
*
40766 ATCATGCCAGTTATAT
64 ATCATGCCAGTTAGAT
* * * *
40782 GAAAGGCTAAATATCTTTGAG-AAAATGACTAAAAGCATAGTTGTGCATTTGGCAGAAAGGTGTC
1 GAAAGGTTAAATACCTTTGAGTAAAA-GACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGT-TC
40846 AATCATGCCAGTTAGAT
63 AATCATGCCAGTTAGAT
* * * * * *
40863 GAAAGGTTAAATACCTTTGAGTAAAAGACTATAT-CCACAGTTGTACATTTTGCAGAATGGTGTG
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCC-TA-TTGTGCATTTGGCAGAAAGGT-TC
**
40927 AATCATGCCTTTTAGAT
63 AATCATGCCAGTTAGAT
* *
40944 TAAAGGTTAAATACCTTTGAGTAAATGACTAAATGCCTATCTGTGCATTTGGCAGAAAGGTGTCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAT-TGTGCATTTGGCAGAAAGGT-TCA
41009 ATCATGCCAGTTAGAT
64 ATCATGCCAGTTAGAT
* * * * * *
41025 GAAAGTTTAAATACTTTTGAGTAAAAGATTAAATGCCTAGCTGTGCATTTGGCAAAAAGGTACCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGT-TCA
*
41090 ATCATGCCAATTAGAT
64 ATCATGCCAGTTAGAT
* * * * * *
41106 GAAAGGTTAAATAACTTTGAGTAAAAGTCTAAATGACTAGTTGTGCTTTTGGCATAAAAGTGTCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGT-TCA
* *
41171 ATCAAGCCACTTAGAT
64 ATCATGCCAGTTAGAT
* * * * *
41187 GAAATGTTAAATACCTTTGAGTAAAAGACTAAATGTCTAGTTGTGCATTTGGTAAAAAGGTACCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGT-TCA
* * *
41252 ATTATGCTAGTTATAT
64 ATCATGCCAGTTAGAT
* * * * * *
41268 GAAAGGTTAAATACCTTTGTGTAGAAGACTAAAT-CACTAGATGTGCATTTGG-TGAAAATGTGC
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGC-CTA-TTGTGCATTTGGCAG-AAAGGT-T
41331 CAATCATGCCAGTTAGAT
62 CAATCATGCCAGTTAGAT
* *
41349 GAAAGGTTAAATAACTTTGAGTAAAAGACTAAATGCCTAGCTT-TGCATTTGGCAGAAAGGTGCC
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA--TTGTGCATTTGGCAGAAAGGT-TC
* *
41413 AATCTTTCCAGTTAGAT
63 AATCATGCCAGTTAGAT
41430 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGT-TCA
41495 ATCATGCCAGTTAGAT
64 ATCATGCCAGTTAGAT
* * * *
41511 GTATGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGATGTGCATTGGGCAGAAAGGTTCCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGTT-CA
*
41576 ATCATGTCAGTTAGAT
64 ATCATGCCAGTTAGAT
* * * *
41592 GAAAGTTTAAATGCCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTTGCAGAAAGGTGCCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGT-TCA
*
41657 ATCATGCCAATTAGAT
64 ATCATGCCAGTTAGAT
* * * *
41673 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCATAGTTGTGTATTTTGCAGAAAGGTGTTA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGT-TCA
41738 ATCATGCCAGTTAGAT
64 ATCATGCCAGTTAGAT
* ** * *
41754 GAAAGGTTAAATACCTTTGAGTAAAATACTAAATGAATAGCTGTGCATTTGGTAGAAAGGTGAT-
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTA-TTGTGCATTTGGCAGAAAGGT--TC
* **
41818 AACCATGTTAGTTAGAT
63 AATCATGCCAGTTAGAT
*
41835 GAAAGGTTAAATGCCTTT
1 GAAAGGTTAAATACCTTT
41853 AGAGGTTAAA
Statistics
Matches: 7486, Mismatches: 1201, Indels: 282
0.83 0.13 0.03
Matches are distributed among these distances:
68 2 0.00
69 54 0.01
70 1 0.00
73 2 0.00
77 2 0.00
79 23 0.00
80 574 0.08
81 6676 0.89
82 148 0.02
83 4 0.00
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.30
Consensus pattern (79 bp):
GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTATTGTGCATTTGGCAGAAAGGTTCAAT
CATGCCAGTTAGAT
Found at i:33102 original size:216 final size:216
Alignment explanation
Indices: 32728--33166 Score: 528
Period size: 216 Copynumber: 2.0 Consensus size: 216
32718 CTAGTTAGAT
* * * * **
32728 GAAAGGTTAAATACCTTTGAAAAAAAGATTAAATGCCTAGCTGTATATTTGGCTGAAGAGTGTCA
1 GAAAGGTTAAATACCATTGAAAAAAAGACTAAATGCATAGCTGTACATTTGGCAAAAGAGTGTCA
* * * * ** *
32793 ATCATGATAGTTAGATGAAAGGTTAAACACCTTTGATTAAAAGATTAAATGCCTAGATTTGTATT
66 ATCATGACAGTTAGATGAAAGGTTAAACACATTTGAGTAAAAGACTAAATGCCTAGACGTGCATT
* * * * *
32858 TTGCAAAAAGGTGTCAATGATGCCAGTTAGATGAAAGGTTAAATACC-TTTGACTAAAAGACTAA
131 TGGCAAAAAGGTGTCAATCAAGCCAGTTAGATAAAAGGTCAAA-ACCTTTTGACTAAAAGACTAA
32922 AT-TCATAGTT-ATGCATTTGGCA
195 ATGTC-TAGTTGA-GCATTTGGCA
** * * *
32944 GAAAGGTTAAATACCATTGAGTAAAAGACTAAATGCATAGTTGTGCATTTGGCAAAATG-GTGTG
1 GAAAGGTTAAATACCATTGAAAAAAAGACTAAATGCATAGCTGTACATTTGGCAAAA-GAGTGTC
* * * * *
33008 AATCATGCCAGTTAGATTAAAGGTTAAATACATTTGAGTAAAAGACTAAATGCTTATACGTGCAT
65 AATCATGACAGTTAGATGAAAGGTTAAACACATTTGAGTAAAAGACTAAATGCCTAGACGTGCAT
* *
33073 TTGGCAGAAAGGT-TCCAATCAAGCCAGTTAGATAAAAGGTCAAAACCTTTTGAGTAAAAGACTA
130 TTGGCAAAAAGGTGT-CAATCAAGCCAGTTAGATAAAAGGTCAAAACCTTTTGACTAAAAGACTA
33137 AATGTCTAGTTGAGCATTTGGCA
194 AATGTCTAGTTGAGCATTTGGCA
33160 GAAAGGT
1 GAAAGGT
33167 GTCAATCATG
Statistics
Matches: 188, Mismatches: 30, Indels: 10
0.82 0.13 0.04
Matches are distributed among these distances:
215 4 0.02
216 180 0.96
217 4 0.02
ACGTcount: A:0.38, C:0.12, G:0.21, T:0.30
Consensus pattern (216 bp):
GAAAGGTTAAATACCATTGAAAAAAAGACTAAATGCATAGCTGTACATTTGGCAAAAGAGTGTCA
ATCATGACAGTTAGATGAAAGGTTAAACACATTTGAGTAAAAGACTAAATGCCTAGACGTGCATT
TGGCAAAAAGGTGTCAATCAAGCCAGTTAGATAAAAGGTCAAAACCTTTTGACTAAAAGACTAAA
TGTCTAGTTGAGCATTTGGCA
Found at i:33236 original size:162 final size:161
Alignment explanation
Indices: 32944--41852 Score: 10147
Period size: 162 Copynumber: 55.1 Consensus size: 161
32934 GCATTTGGCA
* * *
32944 GAAAGGTTAAATACCATTGAGTAAAAGACTAAATGCATAGTTGTGCATTTGGCA-AAATGGTGTG
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAA-GGTGTC
* * * *
33008 AATCATGCCAGTTAGATTAAAGGTTAAATACATTTGAGTAAAAGACTAAATGCTTA-TACGTGCA
65 AATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGT-TGTGCA
*
33072 TTTGGCAGAAAGGTTCCAATCAAGCCAGTTAGAT
129 TTTGGCAGAAAGGTT-CAATCATGCCAGTTAGAT
* * * *
33106 AAAAGGTCAAA-ACCTTTTGAGTAAAAGACTAAATGTCTAGTTGAGCATTTGGCAGAAAGGTGTC
1 GAAAGGTTAAATACC-TTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTC
* * * * *
33170 AATCATGCCAGTTAGATGAAAGGTTAAATACCTTTAAATAAAAGGCTAAATGCCTAGATATGCAT
65 AATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCAT
* *
33235 TTGGCAGAAAGGTGTCAATCATGCCACTTAAAT
130 TTGGCAGAAAGGT-TCAATCATGCCAGTTAGAT
* * * * *
33268 GAAAGGTAAAATACCTTTGAGTAAAAGACTAAATGTCTAGTTGTGCTTTTGGCAAAAATGTGTCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCA
* ** * * * ** *
33333 ATCATGCTAGTTTCATGAAAGGTTAAATCCCTTTAAGTAAAAGACTTAATGCCTAAATATGCATT
66 ATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATT
* *
33398 TGGTAGAAAGGTGGCAATCATGCCAGTTAGAT
131 TGGCAGAAAGGT-TCAATCATGCCAGTTAGAT
* * * *
33430 GAAAGGTTAAATACCTTTGAATAACAGATTAAATGCCTAGTTGTGCATTTGGCAGGAAGGTGTCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCA
* * * * * *
33495 ATCATGCCAGTTAGACGAAAGGTTAAACATCTTTGAGTAAAAGATTAAATGCCTAGATGTGTATT
66 ATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATT
* * *
33560 TTGCAAAAAGGGTTCAATCATGCCAGCTAGAT
131 TGGCAGAAA-GGTTCAATCATGCCAGTTAGAT
** * * * * * **
33592 GAAAGGTTAAATATATTTAAGTAAAAGACTAAATTCATAGTTTTGCATTTGGAAGAAAGGTACCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCA
* ** *
33657 ATCATGCCAGTTAGATGAAAGGTTAAATACCTTGGAGTAAAAGACTAAATGTATAGTTGTGCATA
66 ATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATT
*
33722 TGGCAGAAAGGTGCAAATCATGCCAGTTAGAT
131 TGGCAGAAAGGTTC-AATCATGCCAGTTAGAT
* * * * **
33754 GAAAGATTAAATACTTTTTAGTAAAAGACTAAATGTCTA-TCTGTGCATTTGTTAGAAAGGTGTC
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGT-TGTGCATTTGGCAGAAAGGTGTC
* ** * *
33818 AATCATGCCAGTTAGATGAAAAGTTAAATACCTTTGAGTAAAATTCTGAATGACTAGTTGTGCAT
65 AATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCAT
* *
33883 TTGGCAGAAAGGTGCCAATCAAGCCAGTTAGAT
130 TTGGCAGAAAGGT-TCAATCATGCCAGTTAGAT
* * * * *
33916 TAAAGGTTAAATAACTTTGAGTAAAAGACTAAATGTCTAGTTGTGCATTTGGTAGAAATGTGTCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCA
* * * *
33981 ATCATGTCGGTTAGATGAAAGGTTAAAT--CTCTTGAGTAAAAGATTAAATGCCTAGCTGTGCAT
66 ATCATGCCAGTTAGATGAAAGGTTAAATACCT-TTGAGTAAAAGACTAAATGCCTAGTTGTGCAT
* * *
34044 TTGGTAGAAATGTGTCAATCATGCCAGTTGGAT
130 TTGGCAGAAAGGT-TCAATCATGCCAGTTAGAT
* * * ** * *
34077 GAAAGGTTAAATAACTTTTAGTAAAAGTCTAAATGCCTAGAAGTACATTTGGAAGAAAGGT-TCC
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGT-C
* * * *
34141 AATCATGCCAATTAGATGAAAGGTTAAATATCTTTGAGTAAAAGAATAAATGCCTAGCTGTGCAT
65 AATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCAT
* *
34206 TTGGTAGAAATGTGTCAATCATGCCAGTTAGAT
130 TTGGCAGAAAGGT-TCAATCATGCCAGTTAGAT
* * * *
34239 GAATGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGCTT-TGTATTTTGCAGAAAGTTGTC
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG-TTGTGCATTTGGCAGAAAGGTGTC
* * * ** *
34303 AATCATGTCAGTTATATGAAAGGCTAAATACCTTTGAGTAAAAGACTAAATGAATAGTTATGCAT
65 AATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCAT
*
34368 TTGGGAGAAAGGTATCAATCATGCCAGTTAGAT
130 TTGGCAGAAAGGT-TCAATCATGCCAGTTAGAT
* * * *
34401 GAAAGGTTAAATACCTTTGAGTAAAAGAATATATGCATAGTTGTGCATTTGGCAGAAAGGTGTGA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCA
* * ** * **
34466 ATCATGCCAGTTAGATTAATGGTTAAATATTTTTGGGTAAAAGACTAAATTTCTA-TCTGTGCAT
66 ATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGT-TGTGCAT
* *
34530 TTGGCAGAAAGGTGCCAATCATGCCAGTTATAT
130 TTGGCAGAAAGGT-TCAATCATGCCAGTTAGAT
* * ** * * *
34563 GAAAGGTCAAATACCTTTGAGTAAAAGAATAAATATCTAGTTATGCATTTGACAGAATGGTGTCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCA
* *
34628 ACCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGATGTGCATT
66 ATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATT
*
34693 TGGAAGAAAGGTGTCAATCATGCCAGTTAGAT
131 TGGCAGAAAGGT-TCAATCATGCCAGTTAGAT
* * * *
34725 GAAAGGTCAAATACCTTTGAGTAAAAGACTAAATGTCTAGTTGTGCATTTGGAAAAAAGGTGTCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCA
* * * * *
34790 ATCATGCTAGTTAGATGAAACGTTAAATAACTTTGAGTAAAAGACTTAATGCCTAGATGTGCATT
66 ATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATT
* *
34855 TGGTAGAAAGGTGTCAATCATGCTAGTTAGAT
131 TGGCAGAAAGGT-TCAATCATGCCAGTTAGAT
* * * * * * *
34887 GAAAGGTTAAACACCTTTGTGTAAAAGATTAAATGCCTAGATGTGTATTTTGCAAAAAGGTGTCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCA
* * * * *
34952 ATGATGCCAGTTAGATGAAAGGTTAAATACCTTTGACTAAAAGACCAAATGCATAGTTATGCATT
66 ATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATT
* * * *
35017 TGGCAGAAAGGTTCCACTTAGGCCTGTTAGAT
131 TGGCAGAAAGGTT-CAATCATGCCAGTTAGAT
* * * *
35049 GAAAGGTTAAATACCATTGAGTAAAAGACTAAATGCATAGTTGTGCATTTGGCAAAAAGGTGTGA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCA
* ** *
35114 ATCATGCCAGTTAGATTAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGTTTA-TACGTGCAT
66 ATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGT-TGTGCAT
*
35178 TTGGCAGAAAGGTGCCAATCATGCCAGTTAGAT
130 TTGGCAGAAAGGT-TCAATCATGCCAGTTAGAT
* * * *
35211 AAAAGGTTAAAAACCTTTGAGTAAAAGACTAAAAGTCTAGTTGTGCATTTGGCAGAAAGGTGTCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCA
* * * * * *
35276 ATCATGCCAGTTAGATGAAATGTGAAATACCTTTAAGTAAAAGACTAAATGCCTAGATATGTATT
66 ATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATT
** * *
35341 TGGCATTAAGGTGCCAATGATGCCAGTTAGAT
131 TGGCAGAAAGGT-TCAATCATGCCAGTTAGAT
** * * * *
35373 GAATTGTAAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTATGCTTTTGGCA-AAATTGTGTC
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAA-GGTGTC
* * * * * **
35437 AATCATGCCAGTTCA-ATGAAAGGTTAAATCCCTTTAAGTAAAAGTCTTAATCCCTAAATGTGCA
65 AATCATGCCAGTT-AGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCA
*
35501 TTTGGTAGAAAGGTGTCAATCATGCCAGTTAGAT
129 TTTGGCAGAAAGGT-TCAATCATGCCAGTTAGAT
* * * * *
35535 GAAATGTTATATACCTTTGAGTAACAGATTAAATGCCTAGTTGTGCATTTGGCATAAAGGTGTCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCA
* * * * *
35600 ATCATGCCAGTTAGACGAAAGGTTAAACACCTTTGAGTAAAAGATTAAATGCCTAGATGTGTATT
66 ATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATT
* * *
35665 TTGCAAAAAGGTGTCAATCATGCCAGCTAGAT
131 TGGCAGAAAGGT-TCAATCATGCCAGTTAGAT
* ** * * * * **
35697 GAAATGTTAAATATATTTAAGTAAAAGACTAAATGCATAGTTTTGCATTTGGAAGAAAGGTACCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCA
* * * *
35762 ATCATGCCAGTTAGATGAAAGGTTAAATACCTTGGAGTAAAAGACTAAATACATAGTTGTACATT
66 ATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATT
* * *
35827 TGGCAGAAAGGTGCAAATAATGTCA-TATAGAT
131 TGGCAGAAAGGTTC-AATCATGCCAGT-TAGAT
* * * * ** *
35859 GAAAGGTTAAATTCCTTTTAGTAAAACACTAAATGTCTA-TCTGTGCATTTGTTAGAAAGGTTTC
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGT-TGTGCATTTGGCAGAAAGGTGTC
* * * *
35923 AATCATGCCAGTTAGATGAAAAGTTAAATACCATTGAGTAAAAGACTAATTGCCTAGCTGTGCAT
65 AATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCA-
* *
35988 TTTGG-AAAAAGGTGTCAATCATGCCAGTTAGTT
129 TTTGGCAGAAAGGT-TCAATCATGCCAGTTAGAT
* * * * * *
36021 GACAGGTTAAATACCTTTGAGTAAAAGTCTGAATGACTAGCTGTGCATTTGGCAGAAAGGTGCCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCA
* * * * *
36086 ATCAAGCCAGTTAGATGAAAGGTTAAATAACTTTGACTAAAAGACTAAATGTCTAGCTGTGCATT
66 ATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATT
* * *
36151 TGGTAGAAATGTGCCAATCATGCCAGTTAGAT
131 TGGCAGAAAGGT-TCAATCATGCCAGTTAGAT
* * * * * *
36183 GAAAGGTTAAATACC-TTGACTAAAAGATTAAATGCCTAGCTGTGCATTTGGTAGAAATGTTTCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCA
* * * * * *
36247 ATAATGCCAGTTGGATGAAAGGTTAAATAACTTTTAGTAAAAGACTAAATGCCTAGATGTACATT
66 ATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATT
* * *
36312 TGGAAGAAAGCTTTCAATCATGCCAATTAGAT
131 TGGCAGAAAG-GTTCAATCATGCCAGTTAGAT
* * * * * *
36344 GAAAGGTTAAATATCTTTGAGTAAAAGAATAAATGCCTAGCTGTGCATTTGGTATAAATGTGTCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCA
* * * *
36409 ATCATGTCAGTTAGATGAATGGTTAAATACCTTTGAGTAAAAGACTAAATACCTAGCTT-TGTAT
66 ATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG-TTGTGCAT
* * *
36473 TTTGTAGAAA-G------CA----AGTTATAT
130 TTGGCAGAAAGGTTCAATCATGCCAGTTAGAT
* * *
36494 GAAAGGCTAAATACCTTTGAGTAAAAGACTAAATGCATAGTTATGCATTTGGCAGAAAGGTGTCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCA
** * *
36559 ATCATGCTTGTTAGATGAAAAGTTAAATACCTTTGAGTAAAAGACTAAATGCATAGTTGTGCATT
66 ATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATT
* *
36624 TGGAAGAAAGGTGTGAATCATGCCAGTTAGAT
131 TGGCAGAAAGGT-TCAATCATGCCAGTTAGAT
* * *
36656 TAAAGGTTAAATACCTTTGAGTAAAATACTAAATGCCTATTTGTGCATTTGGCAGAAAGGTGTCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCA
* * * **
36721 GTCATGCCAGTTAGATGAAATGTCAAATACCTTTGAGTAAAAGACTAAATTTCTAGTTGTGCATT
66 ATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATT
* *
36786 TGGTAGAAAGGTGTCAATCAAGCCAGTTAGA-
131 TGGCAGAAAGGT-TCAATCATGCCAGTTAGAT
* * * * * * *
36817 AAAAGGTTAAATACCTTTGAGTAAAATACTAAATGCCTAGTTGTGTATTTTGCATAAATGTGTTA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCA
* * *
36882 ATCATGCCAGTTAGATGAAAGCTTAAATACCTTTAAGTAAAAGATTAAATGCCTAGTTGTGCATT
66 ATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATT
* *
36947 TGGCAGAAATATGTT-AATCATGTCAGTTAGAT
131 TGGCAG-AA-AGGTTCAATCATGCCAGTTAGAT
* * * * * * ** *
36979 GAAAGGTTAAACACCTTTGAATAAAAGATTAATTACCTAGATGTTTATTTTGCAGAAAGGTGTCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCA
* * * * * * * * *
37044 ACCATGCCACTTACATGAAAGGTTAAATACATTTCAGTAAAATACTAATTGCATAGTTATGCATT
66 ATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATT
* * * * * *
37109 TGGAATAAATGTGCCAATCATGCAAGTTATAT
131 TGGCAGAAAGGT-TCAATCATGCCAGTTAGAT
** * * * * *
37141 GAAATTTTAAATACCTTTGTGTAAAAGAATAAATGCATAGTTGTGCATCTGGCAGAAAGGTGTAA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCA
* ***
37206 ATCATGCCAGTTAGATTAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAACCGTGCATT
66 ATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATT
* *
37271 TGGCAGAAAGGTGTCAATCATGCTAGATAGAT
131 TGGCAGAAAGGT-TCAATCATGCCAGTTAGAT
* * * * * * * *
37303 GAAAGGTTAAATATCTTTGAGTAAAAGACTAATTGTCTAGATGTTCATTTGGAAAAAAGGTG-CC
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCA
* * * * * *
37367 ATGCATTCCAGTTGGATGAAAGGTTAAATAACTTTGAGTAAAAGTCTAAATGACTAGTTTTGCAT
66 AT-CATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCAT
* * *
37432 TTAGCATAAAGGTGCCAATCATGCCAGTTAGAT
130 TTGGCAGAAAGGT-TCAATCATGCCAGTTAGAT
* * * * * *
37465 GAAATGTTAAATACCTTGGAGTAAAAGACTAAATGACTAGCTGTGCATTTGGTAGAAAGGTGCCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCA
* * * * *
37530 ATCATGCTAGTTATATGAAAGGTTAAATACCTTTGTGTAAAAGACTAAATGACTAGATGTGCATT
66 ATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATT
* *
37595 TGGCAAAAAGGTGCCAATCATGCCAGTTAGAT
131 TGGCAGAAAGGT-TCAATCATGCCAGTTAGAT
* * *
37627 GAAAGGTTAAATAACTTTGAGTAAAAGACTAAATGCCTAGATGTGCATTTGGAAGAAAGGT-TCC
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGT-C
* * * *
37691 AATCATGCCAATTAGATGAAAGGTTAAATATCTTTGAGTAAAAGAATAAATGCCTAGCTGTGCAT
65 AATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCAT
* * *
37756 TTGGTAGAAATGTGTCAATCATGCCAATTAGAT
130 TTGGCAGAAAGGT-TCAATCATGCCAGTTAGAT
* * * * *
37789 GAATGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGCTT-TGTATTTTGCAGAAAGTTGAC
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG-TTGTGCATTTGGCAGAAAGGTGTC
* * * **
37853 AATCATGTCAGTTATATGAAAGGCTAAATACCTTTGAGTAAAAGACTAAATGAATAGTTGTGCAT
65 AATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCAT
*
37918 TTGGCAGAAAGGTGTCAATAATGCCAGTTAGAT
130 TTGGCAGAAAGGT-TCAATCATGCCAGTTAGAT
* * * * * * * *
37951 GAAAGGTTAAATACCTATGAGTAAAAGACTTAATGCATAGTTTTACATTTTGCAGAATGGTGTGA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCA
* * ** * * * *
38016 ATCGTGTCTTTTAGATTAAAGGTTAAATATCTTTGAGTAAATGACTAAATGTCTA-TCTGTGCAT
66 ATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGT-TGTGCAT
38080 TTGGCAGAAAGGTTCCAATCATGCCAGTTAGAT
130 TTGGCAGAAAGGTT-CAATCATGCCAGTTAGAT
* * * * ** * * * **
38113 TAAAGGTTAAATACTTTTGAGTAAAAAGATTAAATGCCTAGCTGTTAATTTGACAAAAAGTTACC
1 GAAAGGTTAAATACCTTTGAGT-AAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTC
* * * *
38178 AATCATGCCAGTTAGATGAAAGGTTAAATAACTTTGAGTAAAAGTCTAAATGACTAGTTGTGCTT
65 AATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCAT
*
38243 TTGGCAGAAAAGTGTCAATCATGCCAGTTAGAT
130 TTGGCAGAAAGGT-TCAATCATGCCAGTTAGAT
* *
38276 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGATGTGCATTGGGCAGAAAGGT-TCC
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGT-C
* ** *
38340 AATCATGCCAGTTAGATGAAAGTTTAAATGTCTTTGAGTAAAAGACTAAATGACTAGTTGTGCAT
65 AATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCAT
* * * * *
38405 TTGGTAGAAATGTGCCAATCATGCTAGTTATAT
130 TTGGCAGAAAGGT-TCAATCATGCCAGTTAGAT
* * * * * * * * *
38438 GAAAGGTTAAATACCTTTGTGTAGAAGACTAAATGACTAGATGTACATTTGTCAAAAATGTGCCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCA
* * * * * *
38503 ATCATGCCAGTTAGATGAATGGATAAATAACTTTGAGTAAAAGACTAAATTCCTAGATGTGTATT
66 ATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATT
* * * *
38568 TGGTAGAAAGGTTTCAGTCATTCCAATTAGAT
131 TGGCAGAAAGG-TTCAATCATGCCAGTTAGAT
** * * * * ** *
38600 GAAACCTTAAATA-CATTGAGTAAAAGATTAAATGCCCAGCTGTGCATTTGATAGAAATGTGTCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCA
* * *
38664 ATCATGCCAGTTGGATGAGAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGCTT-TGTAT
66 ATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG-TTGTGCAT
* ** * *
38728 TTTGCAGAAATTTTTAATCATGCCAGTTATAT
130 TTGGCAGAAAGGTTCAATCATGCCAGTTAGAT
* * * *
38760 GAAAGGCTAAATATCTTTGAG-AAAATGACTAAAAGCATAGTTGTGCATTTGGCAGAAAGGTGTC
1 GAAAGGTTAAATACCTTTGAGTAAAA-GACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTC
* * *
38824 AATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTATAT-CCACAGTTGTACA
65 AATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCC-TAGTTGTGCA
* * * **
38888 TTTTGCAGAATGGTGTGAATCATGCCTTTTAGAT
129 TTTGGCAGAAAGGT-TCAATCATGCCAGTTAGAT
* * ***
38922 TAAAGGTTAAATACCTTTGAGTAAATGACTAAATGCCTAACCGTGCATTTGGCAGAAAGGTGTCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCA
* * * * * *
38987 ATCATGCTAGATAGATGAAAGGTTAAATATCTTTGAGTAAAAGACTAATTGTCTAGCTGTGCATT
66 ATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATT
* * * * *
39052 TGG-AAAAAGGTGCCATGCATTCCAGTTGGAT
131 TGGCAGAAAGGTTCAAT-CATGCCAGTTAGAT
* * * * * * *
39083 GAAAGGTTAAATAACTTTGAGTAAAAGTCTAAATGACTAGTTTTGCATTTAGCATAAAGGTGCCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCA
* * * *
39148 ATCATGCCAGTTAGATGAAATGTTAAATACCTTGGAGTAAAAGACTAAATGACTAGCTGTGCATT
66 ATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATT
* * * * *
39213 TGGTAGAAAGGTGCCAATCCTGCTAGTTATAT
131 TGGCAGAAAGGT-TCAATCATGCCAGTTAGAT
* * * * *
39245 GAAAGGTTAAATACCTTTGTGTAAAAGACTAAATGACTAGATGTGCATTTGGCAAAAAGGTGCCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCA
* *
39310 ATCATGCCAGTTAGATGAAAGGTTAAATAACTTTGAGTAAAAGACTAAATGCCTAGATGTGCATT
66 ATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATT
* *
39375 TGGAAGAAAGGTTCCAATCATGCCAATTAGAT
131 TGGCAGAAAGGTT-CAATCATGCCAGTTAGAT
* * * *
39407 GAAAGGTTAAATATCTTTGAGTAAAAGAATAAATGCCTAGTTGTGCATTTGGTAGAAATGTGTCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCA
* * *
39472 ATCATGCCAATTAGATGAATGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGCTT-TGTAT
66 ATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG-TTGTGCAT
* * * *
39536 TTTGCAGAAAGTTGTCAATCATGTCAGTTATAT
130 TTGGCAGAAAGGT-TCAATCATGCCAGTTAGAT
* **
39569 GAAAGGCTAAATACCTTTGAGTAAAAGACTAAATGAATAGTTGTGCATTTGGCAGAAAGGTGTCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCA
* * * * * * *
39634 ATAATGACAGTTAGATGAAAGGTTAAATACCTATGAGTAAAAGACTTAATGCATAGTTTTACATT
66 ATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATT
* * * * * **
39699 TTGCAGAATGGTGTGAATCGTGTCTTTTAGAT
131 TGGCAGAAAGGT-TCAATCATGCCAGTTAGAT
* * *
39731 TAAAGGTTAAATACCTTTGAGTAAATGACTAAATGTCTA-TCTGTGCATTTGGCAGAAAGGT-TC
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGT-TGTGCATTTGGCAGAAAGGTGT-
* * * * **
39794 CAATCATGCCAGTTAGATTAAAGGTTAAATACTTTTGAGTAAAAGATTAAATGCCTAGCTGTTAA
64 CAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCA
* *
39859 TTTGACA-AAAAGTTACCAATCATGCCAGTTAGAT
129 TTTGGCAGAAAGGTT--CAATCATGCCAGTTAGAT
* * * * *
39893 GAAAGGTTAAATAACTTTGAGTAAAAGTCTAAATGACTAGTTGTGCTTTTGGCAGAAAAGTGTCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCA
* *
39958 ATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGTCTAGTTGTCCATT
66 ATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATT
* * * * * * *
40023 TGGTAAAAATGTGCCAATCAAGCTAGTTATAT
131 TGGCAGAAAGGT-TCAATCATGCCAGTTAGAT
* * * * *
40055 GAAAGGTTAAATACCTTTGTGTAGAAGACTAAAT-CACTA-TATGTGCATTTGGTACAAAGGTGC
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGC-CTAGT-TGTGCATTTGGCAGAAAGGTGT
* * *
40118 CAATCATGCCAGTTAGATGAAAGGTTAAATAACATTGAGTAAAAGACTAAATGCCTAGCTGTGCA
64 CAATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCA
* *
40183 TTTGGCAGAAAGGTACCAATCTTGCCAGTTAGAT
129 TTTGGCAGAAAGGT-TCAATCATGCCAGTTAGAT
* *
40217 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGCTGTGCATTTGGCAGAAAGGTATCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCA
*
40282 ATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGATGTGCATT
66 ATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATT
*
40347 GGGCAGAAAGGTTCCAATCATGCCAGTTAGAT
131 TGGCAGAAAGGTT-CAATCATGCCAGTTAGAT
* * * * * *
40379 GAAAGTTTAAATGCCTTTGAGTAAAAGACTAAATGACTAGTTGTGCATTTGGTAGAAATGTGCCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCA
* * * * * *
40444 ATCATGCTAGTTATATGAAAGGTTAAATACCTTTGTGTAGAAGACTAAATGACTAGATGTGCATT
66 ATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATT
* * * *
40509 TGTCAAAAATGTGCCAATCATGCCAGTTAGAT
131 TGGCAGAAAGGT-TCAATCATGCCAGTTAGAT
* * * * * *
40541 GAAAGGATAAATAACTTTGAGTAAAAGACTAAATTCCTAGATGTGCATTTGGTAGAAAGGTTTCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCA
* * * ** * * * *
40606 GTCATTCCAATTAGATGAAACCTTAAATA-CATTGAGTAAAAGATTAAATGCCCAGCTGTGCATT
66 ATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATT
** * * *
40670 TGATAGAAATGTGTCAATCATGGCAGTTGGAT
131 TGGCAGAAAGGT-TCAATCATGCCAGTTAGAT
* * * * * *
40702 GAGAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGCTT-TGTATTTTGCAGAAA-TTTTT
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG-TTGTGCATTTGGCAGAAAGGTGTC
* * * * *
40765 AATCATGCCAGTTATATGAAAGGCTAAATATCTTTGAG-AAAATGACTAAAAGCATAGTTGTGCA
65 AATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAA-GACTAAATGCCTAGTTGTGCA
40829 TTTGGCAGAAAGGTGTCAATCATGCCAGTTAGAT
129 TTTGGCAGAAAGGT-TCAATCATGCCAGTTAGAT
* * * * * *
40863 GAAAGGTTAAATACCTTTGAGTAAAAGACTATAT-CCACAGTTGTACATTTTGCAGAATGGTGTG
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCC-TAGTTGTGCATTTGGCAGAAAGGTGTC
** * *
40927 AATCATGCCTTTTAGATTAAAGGTTAAATACCTTTGAGTAAATGACTAAATGCCTA-TCTGTGCA
65 AATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGT-TGTGCA
40991 TTTGGCAGAAAGGTGTCAATCATGCCAGTTAGAT
129 TTTGGCAGAAAGGT-TCAATCATGCCAGTTAGAT
* * * * * **
41025 GAAAGTTTAAATACTTTTGAGTAAAAGATTAAATGCCTAGCTGTGCATTTGGCAAAAAGGTACCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCA
* * * * *
41090 ATCATGCCAATTAGATGAAAGGTTAAATAACTTTGAGTAAAAGTCTAAATGACTAGTTGTGCTTT
66 ATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATT
* * * *
41155 TGGCATAAAAGTGTCAATCAAGCCACTTAGAT
131 TGGCAGAAAGGT-TCAATCATGCCAGTTAGAT
* * * * **
41187 GAAATGTTAAATACCTTTGAGTAAAAGACTAAATGTCTAGTTGTGCATTTGGTAAAAAGGTACCA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCA
* * * * * *
41252 ATTATGCTAGTTATATGAAAGGTTAAATACCTTTGTGTAGAAGACTAAAT-CACTAGATGTGCAT
66 ATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGC-CTAGTTGTGCAT
* * *
41316 TTGG-TGAAAATGTGCCAATCATGCCAGTTAGAT
130 TTGGCAG-AAAGGT-TCAATCATGCCAGTTAGAT
* *
41349 GAAAGGTTAAATAACTTTGAGTAAAAGACTAAATGCCTAGCTT-TGCATTTGGCAGAAAGGTGCC
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAG-TTGTGCATTTGGCAGAAAGGTGTC
* *
41413 AATCTTTCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCAT
65 AATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCAT
41478 TTGGCAGAAAGGTGTCAATCATGCCAGTTAGAT
130 TTGGCAGAAAGGT-TCAATCATGCCAGTTAGAT
* * * *
41511 GTATGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGATGTGCATTGGGCAGAAAGGT-TCC
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGT-C
* * *
41575 AATCATGTCAGTTAGATGAAAGTTTAAATGCCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCAT
65 AATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCAT
* * *
41640 TTTGCAGAAAGGTGCCAATCATGCCAATTAGAT
130 TTGGCAGAAAGGT-TCAATCATGCCAGTTAGAT
* * * *
41673 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCATAGTTGTGTATTTTGCAGAAAGGTGTTA
1 GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCA
* ** *
41738 ATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAATACTAAATGAATAGCTGTGCATT
66 ATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATT
* * **
41803 TGGTAGAAAGGTGAT-AACCATGTTAGTTAGAT
131 TGGCAGAAAGGT--TCAATCATGCCAGTTAGAT
*
41835 GAAAGGTTAAATGCCTTT
1 GAAAGGTTAAATACCTTT
41853 AGAGGTTAAA
Statistics
Matches: 7405, Mismatches: 1224, Indels: 236
0.84 0.14 0.03
Matches are distributed among these distances:
149 2 0.00
150 123 0.02
151 1 0.00
154 2 0.00
158 2 0.00
160 77 0.01
161 976 0.13
162 6027 0.81
163 193 0.03
164 2 0.00
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.30
Consensus pattern (161 bp):
GAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATTTGGCAGAAAGGTGTCA
ATCATGCCAGTTAGATGAAAGGTTAAATACCTTTGAGTAAAAGACTAAATGCCTAGTTGTGCATT
TGGCAGAAAGGTTCAATCATGCCAGTTAGAT
Found at i:54772 original size:23 final size:23
Alignment explanation
Indices: 54746--54811 Score: 82
Period size: 23 Copynumber: 2.9 Consensus size: 23
54736 AAAAATCACT
54746 ATTAAATTATAATTCT-ATTAAAA
1 ATTAAATTATAATTCTAATT-AAA
*
54769 ATTAAATTA-AATTTTAATTAAA
1 ATTAAATTATAATTCTAATTAAA
*
54791 ATTATAATTATAATTATAATT
1 ATTA-AATTATAATTCTAATT
54812 CTATTACAAG
Statistics
Matches: 38, Mismatches: 2, Indels: 5
0.84 0.04 0.11
Matches are distributed among these distances:
22 12 0.32
23 17 0.45
24 9 0.24
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.47
Consensus pattern (23 bp):
ATTAAATTATAATTCTAATTAAA
Found at i:54777 original size:12 final size:11
Alignment explanation
Indices: 54746--54833 Score: 52
Period size: 11 Copynumber: 7.7 Consensus size: 11
54736 AAAAATCACT
*
54746 ATTAAATTATA
1 ATTAAATTAAA
**
54757 ATTCTATTAAAA
1 ATTAAATT-AAA
54769 ATTAAATTAAA
1 ATTAAATTAAA
* *
54780 TTTTAATTAAA
1 ATTAAATTAAA
*
54791 ATTATAATTATA
1 ATTA-AATTAAA
**
54803 ATTATAATT-CT
1 ATTA-AATTAAA
*
54814 ATTACAAGTAAA
1 ATTA-AATTAAA
54826 ATTAAATT
1 ATTAAATT
54834 TTAATAAATA
Statistics
Matches: 57, Mismatches: 17, Indels: 6
0.71 0.21 0.08
Matches are distributed among these distances:
11 30 0.53
12 27 0.47
ACGTcount: A:0.51, C:0.03, G:0.01, T:0.44
Consensus pattern (11 bp):
ATTAAATTAAA
Found at i:54792 original size:17 final size:17
Alignment explanation
Indices: 54768--54859 Score: 64
Period size: 17 Copynumber: 5.4 Consensus size: 17
54758 TTCTATTAAA
54768 AATT-AAATTAAATTTT
1 AATTAAAATTAAATTTT
*
54784 AATTAAAATTATAATTAT
1 AATTAAAATTA-AATTTT
* ** **
54802 AATTATAATTCTATTAC
1 AATTAAAATTAAATTTT
*
54819 AAGTAAAATTAAATTTT
1 AATTAAAATTAAATTTT
54836 AA-TAAATAGTT-AATTTT
1 AATTAAA-A-TTAAATTTT
*
54853 AAATAAA
1 AATTAAA
54860 TCCTTACTTT
Statistics
Matches: 60, Mismatches: 11, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
16 8 0.13
17 32 0.53
18 20 0.33
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.43
Consensus pattern (17 bp):
AATTAAAATTAAATTTT
Found at i:54807 original size:52 final size:51
Alignment explanation
Indices: 54715--54841 Score: 159
Period size: 52 Copynumber: 2.5 Consensus size: 51
54705 TTAAATCACT
*
54715 AAAATT-AATTATTATTTTAATAAAAATCACTATTAAATTATAATTCTATTA
1 AAAATTAAATTA-AATTTTAATAAAAATCACTATTAAATTATAATTCTATTA
* *
54766 AAAATTAAATTAAATTTTAATTAAAATTA-TAATTATAATTATAATTCTATTA
1 AAAATTAAATTAAATTTTAATAAAAATCACT-ATTA-AATTATAATTCTATTA
* * *
54818 CAAGTAAAATTAAATTTTAATAAA
1 AAAATTAAATTAAATTTTAATAAA
54842 TAGTTAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
50 1 0.02
51 24 0.36
52 41 0.62
ACGTcount: A:0.52, C:0.04, G:0.01, T:0.43
Consensus pattern (51 bp):
AAAATTAAATTAAATTTTAATAAAAATCACTATTAAATTATAATTCTATTA
Found at i:55464 original size:80 final size:78
Alignment explanation
Indices: 55331--55477 Score: 215
Period size: 80 Copynumber: 1.9 Consensus size: 78
55321 CTCAATTAGA
*
55331 ATTATTAAACCCTTATGATCTTAATGGTAAACTACTCCATGGTCACTCAACTTTTATGACACTTT
1 ATTATTAAACCCTTATGATCTTAATGGTAAACTACTCAATGGTCACTCAAC-TTTA-GACACTTT
55396 TATTAATACTTTTAT
64 TATTAATACTTTTAT
* * * *
55411 ATTATTAAACCCTTATGAT-TTAATGTTGAACTACTCAATTGGTTACTCAACTTTAGACTCTTTT
1 ATTATTAAACCCTTATGATCTTAATGGTAAACTACTCAA-TGGTCACTCAACTTTAGACACTTTT
55475 ATT
65 ATT
55478 TATTACTACT
Statistics
Matches: 61, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
78 11 0.18
79 20 0.33
80 30 0.49
ACGTcount: A:0.31, C:0.18, G:0.08, T:0.44
Consensus pattern (78 bp):
ATTATTAAACCCTTATGATCTTAATGGTAAACTACTCAATGGTCACTCAACTTTAGACACTTTTA
TTAATACTTTTAT
Done.