Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005287.1 Hibiscus syriacus cultivar Beakdansim tig00011962_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 114812
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Found at i:16794 original size:19 final size:19
Alignment explanation
Indices: 16770--16807 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
16760 CTACTCTACC
*
16770 CGAACTGTTTGACCTAACT
1 CGAACTGTTTGACCCAACT
16789 CGAACTGTTTGACCCAACT
1 CGAACTGTTTGACCCAACT
16808 TGTTGACTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.29
Consensus pattern (19 bp):
CGAACTGTTTGACCCAACT
Found at i:18540 original size:4 final size:4
Alignment explanation
Indices: 18531--20299 Score: 3440
Period size: 4 Copynumber: 445.8 Consensus size: 4
18521 TTATAAACAT
18531 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
18579 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
18627 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TA--
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
18673 TATG TATG TATG TATG TATG TATG TATG TA-- TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
18719 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
18767 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
18815 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
18863 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
18911 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
18959 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
19007 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
19055 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
19103 TATG TATG TA-G TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
19150 TATG TATG TATG TATG TA-G TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
19197 TATG TATG TA-G TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
19244 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
19292 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG --TG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
19338 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
19386 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
19434 TATG TA-- TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
19480 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
19528 TA-G TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
19575 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
19623 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
19671 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
19719 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
19767 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
19815 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
19863 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
19911 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
19959 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
20007 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
20055 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
20103 TATG TATG --TG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
20149 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
20197 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
20245 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
20293 TATG TAT
1 TATG TAT
20300 TGATTTATGC
Statistics
Matches: 1751, Mismatches: 0, Indels: 28
0.98 0.00 0.02
Matches are distributed among these distances:
2 10 0.01
3 12 0.01
4 1729 0.99
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
TATG
Found at i:21506 original size:14 final size:13
Alignment explanation
Indices: 21489--21570 Score: 58
Period size: 14 Copynumber: 5.7 Consensus size: 13
21479 TTTTGTCTTC
21489 TTTTTCTTTTGTT
1 TTTTTCTTTTGTT
21502 ATTTTTC-TTTGATT
1 -TTTTTCTTTTG-TT
*
21516 CTTTTCTCTTTGTT
1 TTTTTCT-TTTGTT
21530 TTTTTCCTTTTGCTTT
1 TTTTT-CTTTTG--TT
*
21546 GATTTTTTTCTTTGTT
1 --TTTTTCT-TTTGTT
21562 TTTTTCTTT
1 TTTTTCTTT
21571 GCTCTTCTGT
Statistics
Matches: 55, Mismatches: 4, Indels: 19
0.71 0.05 0.24
Matches are distributed among these distances:
13 11 0.20
14 24 0.44
15 6 0.11
16 4 0.07
17 1 0.02
18 9 0.16
ACGTcount: A:0.04, C:0.12, G:0.07, T:0.77
Consensus pattern (13 bp):
TTTTTCTTTTGTT
Found at i:21512 original size:13 final size:12
Alignment explanation
Indices: 21489--21571 Score: 59
Period size: 13 Copynumber: 6.8 Consensus size: 12
21479 TTTTGTCTTC
21489 TTTTTCTTTTGTT
1 TTTTTC-TTTGTT
21502 ATTTTTCTTTGATT
1 -TTTTTCTTTG-TT
21516 CTTTTCTCTTTGTT
1 -TTTT-TCTTTGTT
*
21530 TTTTTC-----C
1 TTTTTCTTTGTT
*
21537 TTTTGCTTTGATT
1 TTTTTCTTTG-TT
21550 TTTTTCTTTGTT
1 TTTTTCTTTGTT
21562 TTTTTCTTTG
1 TTTTTCTTTG
21572 CTCTTCTGTG
Statistics
Matches: 56, Mismatches: 5, Indels: 18
0.71 0.06 0.23
Matches are distributed among these distances:
7 5 0.09
12 14 0.25
13 17 0.30
14 14 0.25
15 6 0.11
ACGTcount: A:0.04, C:0.12, G:0.08, T:0.76
Consensus pattern (12 bp):
TTTTTCTTTGTT
Found at i:21563 original size:32 final size:34
Alignment explanation
Indices: 21503--21567 Score: 107
Period size: 32 Copynumber: 2.0 Consensus size: 34
21493 TCTTTTGTTA
*
21503 TTTTTCTTTGATTCTTTTCTCTTTGTTTTTTTCC
1 TTTTGCTTTGATTCTTTTCTCTTTGTTTTTTTCC
21537 TTTTGCTTTGATT-TTTT-TCTTTGTTTTTTTC
1 TTTTGCTTTGATTCTTTTCTCTTTGTTTTTTTC
21568 TTTGCTCTTC
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
32 14 0.47
33 4 0.13
34 12 0.40
ACGTcount: A:0.03, C:0.14, G:0.08, T:0.75
Consensus pattern (34 bp):
TTTTGCTTTGATTCTTTTCTCTTTGTTTTTTTCC
Found at i:32227 original size:28 final size:27
Alignment explanation
Indices: 32189--32241 Score: 70
Period size: 28 Copynumber: 1.9 Consensus size: 27
32179 ATAATCTCTA
* *
32189 TTCTCTCCTCTTTTTATGTTTTTTTTTC
1 TTCTCTCCTCTGTTTA-CTTTTTTTTTC
*
32217 TTCTCTTCTCTGTTTACTTTTTTTT
1 TTCTCTCCTCTGTTTACTTTTTTTT
32242 ACAAACCCCC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
27 8 0.36
28 14 0.64
ACGTcount: A:0.04, C:0.21, G:0.04, T:0.72
Consensus pattern (27 bp):
TTCTCTCCTCTGTTTACTTTTTTTTTC
Found at i:32716 original size:3 final size:3
Alignment explanation
Indices: 32708--32750 Score: 61
Period size: 3 Copynumber: 14.7 Consensus size: 3
32698 ACATGTAAAT
**
32708 TAA TAA TAA TAA TAA TAA T-A TAA CGA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
32751 TAAAAAAAAG
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
2 2 0.06
3 33 0.94
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:32736 original size:23 final size:23
Alignment explanation
Indices: 32710--32753 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
32700 ATGTAAATTA
32710 ATAATAATAATAATAATATAACG
1 ATAATAATAATAATAATATAACG
32733 ATAATAATAATAATAATATAA
1 ATAATAATAATAATAATATAA
32754 AAAAAAGACC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.64, C:0.02, G:0.02, T:0.32
Consensus pattern (23 bp):
ATAATAATAATAATAATATAACG
Found at i:36124 original size:61 final size:61
Alignment explanation
Indices: 36056--36173 Score: 150
Period size: 61 Copynumber: 1.9 Consensus size: 61
36046 TCAGGTGATA
36056 ATTTTGTAACT-TTTAATAATCAAGGAACTCAACAAAGCAACG-TCTTATAATTGGGGAGACC
1 ATTTTGTAA-TATTTAATAATCAAGGAACTCAACAAAGCAACGCT-TTATAATTGGGGAGACC
* ** * * *
36117 ATTTTGTAATATTTAATAGTTGAGGGACTCAACGAAGTAACGCTTTATAATTGGGGA
1 ATTTTGTAATATTTAATAATCAAGGAACTCAACAAAGCAACGCTTTATAATTGGGGA
36174 CCACATGTGT
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
60 1 0.02
61 47 0.96
62 1 0.02
ACGTcount: A:0.36, C:0.13, G:0.19, T:0.32
Consensus pattern (61 bp):
ATTTTGTAATATTTAATAATCAAGGAACTCAACAAAGCAACGCTTTATAATTGGGGAGACC
Found at i:39083 original size:13 final size:13
Alignment explanation
Indices: 39065--39095 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
39055 ACTTTAGACT
*
39065 AATTTTTTGGTAC
1 AATTTTTTGGTAA
39078 AATTTTTTGGTAA
1 AATTTTTTGGTAA
39091 AATTT
1 AATTT
39096 GGGGATGTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.29, C:0.03, G:0.13, T:0.55
Consensus pattern (13 bp):
AATTTTTTGGTAA
Found at i:39582 original size:17 final size:16
Alignment explanation
Indices: 39560--39593 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
39550 TCTATATATT
39560 ATTTTTTTAATTAAATA
1 ATTTTTTT-ATTAAATA
39577 ATTTTTTTATTAAATA
1 ATTTTTTTATTAAATA
39593 A
1 A
39594 AAATATTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.53
17 8 0.47
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
ATTTTTTTATTAAATA
Found at i:41278 original size:21 final size:20
Alignment explanation
Indices: 41241--41290 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 20
41231 GCGAATATGT
*
41241 AAATCGCATTGCGATTTTCC
1 AAATCGCATTGCCATTTTCC
*
41261 AAATCCGCTTTGCCATTTTCC
1 AAAT-CGCATTGCCATTTTCC
41282 AAATTCGCA
1 AAA-TCGCA
41291 ACGCGAATCT
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
20 4 0.16
21 20 0.80
22 1 0.04
ACGTcount: A:0.26, C:0.28, G:0.12, T:0.34
Consensus pattern (20 bp):
AAATCGCATTGCCATTTTCC
Found at i:41374 original size:60 final size:61
Alignment explanation
Indices: 41281--41452 Score: 192
Period size: 60 Copynumber: 2.8 Consensus size: 61
41271 TGCCATTTTC
* * * *
41281 CAAATTCGCAACGCGAA-TCTATAAATCACAACACATAAGGCAAATTCACAACGCG-AT-AGT
1 CAAATTCGCAACGCGAAGTC-A-AATTCACAACACAAAAGTCAAATTCGCAACGCGAATCAGT
* *
41341 CAAATTCGCAACGCGATAGTCAAATTCGCAACACAAAAGTCAAATTCGCAACGCGAATCTGT
1 CAAATTCGCAACGCGA-AGTCAAATTCACAACACAAAAGTCAAATTCGCAACGCGAATCAGT
* * *
41403 -AAA-TCGCAACACAGAAGTCAAATTCTCAACACAGAAGTCAAATTCGCAAC
1 CAAATTCGCAACGC-GAAGTCAAATTCACAACACAAAAGTCAAATTCGCAAC
41453 ACTGAATTTC
Statistics
Matches: 98, Mismatches: 9, Indels: 10
0.84 0.08 0.09
Matches are distributed among these distances:
60 85 0.87
61 9 0.09
62 4 0.04
ACGTcount: A:0.42, C:0.26, G:0.14, T:0.18
Consensus pattern (61 bp):
CAAATTCGCAACGCGAAGTCAAATTCACAACACAAAAGTCAAATTCGCAACGCGAATCAGT
Found at i:41477 original size:19 final size:19
Alignment explanation
Indices: 41440--41492 Score: 79
Period size: 19 Copynumber: 2.7 Consensus size: 19
41430 AACACAGAAG
41440 TCAAATTCGCAACACTGAATT
1 TCAAATTCGC-A-ACTGAATT
*
41461 TCAAATTTGCAACTGAATT
1 TCAAATTCGCAACTGAATT
41480 TCAAATTCGCAAC
1 TCAAATTCGCAAC
41493 ACGAATTTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
19 20 0.67
20 1 0.03
21 9 0.30
ACGTcount: A:0.38, C:0.23, G:0.09, T:0.30
Consensus pattern (19 bp):
TCAAATTCGCAACTGAATT
Found at i:41500 original size:20 final size:20
Alignment explanation
Indices: 41321--41498 Score: 145
Period size: 20 Copynumber: 8.9 Consensus size: 20
41311 ACACATAAGG
* *
41321 CAAATTCACAACGCG-ATAGT
1 CAAATTCGCAACACGAAT-GT
*
41341 CAAATTCGCAACGCG-ATAGT
1 CAAATTCGCAACACGAAT-GT
* *
41361 CAAATTCGCAACACAAAAGT
1 CAAATTCGCAACACGAATGT
*
41381 CAAATTCGCAACGCGAATCTGT
1 CAAATTCGCAACACGAA--TGT
41403 -AAA-TCGCAACACAGAA-GT
1 CAAATTCGCAACAC-GAATGT
*
41421 CAAATTCTCAACACAGAA-GT
1 CAAATTCGCAACAC-GAATGT
*
41441 CAAATTCGCAACACTGAATTT
1 CAAATTCGCAACAC-GAATGT
* * *
41462 CAAATTTGCAAC-TGAATTT
1 CAAATTCGCAACACGAATGT
41481 CAAATTCGCAACACGAAT
1 CAAATTCGCAACACGAAT
41499 TTAATTTTGT
Statistics
Matches: 134, Mismatches: 16, Indels: 16
0.81 0.10 0.10
Matches are distributed among these distances:
18 2 0.01
19 20 0.15
20 91 0.68
21 19 0.14
22 2 0.01
ACGTcount: A:0.41, C:0.24, G:0.13, T:0.21
Consensus pattern (20 bp):
CAAATTCGCAACACGAATGT
Found at i:41669 original size:22 final size:22
Alignment explanation
Indices: 41627--41670 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
41617 TTCTCTCCGG
*
41627 CGACATCCGTTCCTATATCTAA
1 CGACATCCGTTCCCATATCTAA
*
41649 CGACATCC-TTCCCCATCTCTAA
1 CGACATCCGTT-CCCATATCTAA
41671 TTTTTTTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 2 0.11
22 17 0.89
ACGTcount: A:0.25, C:0.39, G:0.07, T:0.30
Consensus pattern (22 bp):
CGACATCCGTTCCCATATCTAA
Found at i:41687 original size:14 final size:15
Alignment explanation
Indices: 41668--41705 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
41658 TCCCCATCTC
41668 TAATTTTTTT-TAAA
1 TAATTTTTTTATAAA
*
41682 TAATTTTATTTATATA
1 TAATTTT-TTTATAAA
41698 TAATTTTT
1 TAATTTTT
41706 CAATGATTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
14 7 0.33
15 4 0.19
16 10 0.48
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (15 bp):
TAATTTTTTTATAAA
Found at i:42320 original size:12 final size:12
Alignment explanation
Indices: 42299--42332 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
42289 ACCACATTTC
*
42299 CAATACCAAACA
1 CAATATCAAACA
42311 CAATATCAAACA
1 CAATATCAAACA
*
42323 CAATCTCAAA
1 CAATATCAAA
42333 ACCCACAACC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.56, C:0.29, G:0.00, T:0.15
Consensus pattern (12 bp):
CAATATCAAACA
Found at i:42509 original size:24 final size:24
Alignment explanation
Indices: 42442--42511 Score: 77
Period size: 24 Copynumber: 2.9 Consensus size: 24
42432 TTGTGAGTAC
* *
42442 TAGTCAGTAGTCGAAATTTGATCT
1 TAGTCAATACTCGAAATTTGATCT
* * * *
42466 TGGTCAATACCCGGACTTTGATCT
1 TAGTCAATACTCGAAATTTGATCT
*
42490 TAGTCAATACTCGAATTTTGAT
1 TAGTCAATACTCGAAATTTGAT
42512 GATGTTTTAG
Statistics
Matches: 36, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
24 36 1.00
ACGTcount: A:0.27, C:0.17, G:0.19, T:0.37
Consensus pattern (24 bp):
TAGTCAATACTCGAAATTTGATCT
Found at i:44803 original size:18 final size:18
Alignment explanation
Indices: 44780--44815 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
44770 AAGCAAAAGG
*
44780 AAATCAAAATCGCAATCA
1 AAATCAAAATCCCAATCA
44798 AAATCAAAATCCCAATCA
1 AAATCAAAATCCCAATCA
44816 CAACCGGCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.56, C:0.25, G:0.03, T:0.17
Consensus pattern (18 bp):
AAATCAAAATCCCAATCA
Found at i:45130 original size:20 final size:20
Alignment explanation
Indices: 45098--45155 Score: 82
Period size: 20 Copynumber: 2.9 Consensus size: 20
45088 ACAACGCTTA
*
45098 TTTCGCATTGCAAATTTGAC
1 TTTCGCGTTGCAAATTTGAC
45118 ATTT-GCGTTGCAAATTTGAC
1 -TTTCGCGTTGCAAATTTGAC
*
45138 TTTCGCGTTGCGAATTTG
1 TTTCGCGTTGCAAATTTG
45156 TACCTTCAAC
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
19 3 0.09
20 28 0.82
21 3 0.09
ACGTcount: A:0.21, C:0.17, G:0.21, T:0.41
Consensus pattern (20 bp):
TTTCGCGTTGCAAATTTGAC
Found at i:46772 original size:42 final size:42
Alignment explanation
Indices: 46713--46835 Score: 133
Period size: 42 Copynumber: 2.9 Consensus size: 42
46703 GTGAATCGGG
* *
46713 CTCTTGAACGGTGGGAGGGACC-CATTGAACGATGACAGGGGC
1 CTCTTAAACGGTGGGAGGGACCTC-TTGAACGATGACAGGAGC
* *
46755 CTCTTAAACGGTGGGAGGGGCCTCTTGAACGATGAGAGGAGC
1 CTCTTAAACGGTGGGAGGGACCTCTTGAACGATGACAGGAGC
* ** * *
46797 CTCTTGAACAATAGGAGACG-CCTCTTGAACGATGACAGG
1 CTCTTAAACGGTGGGAG-GGACCTCTTGAACGATGACAGG
46836 TGAATCGGGC
Statistics
Matches: 69, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
42 67 0.97
43 2 0.03
ACGTcount: A:0.26, C:0.21, G:0.34, T:0.19
Consensus pattern (42 bp):
CTCTTAAACGGTGGGAGGGACCTCTTGAACGATGACAGGAGC
Found at i:46802 original size:21 final size:21
Alignment explanation
Indices: 46737--46831 Score: 95
Period size: 21 Copynumber: 4.5 Consensus size: 21
46727 GAGGGACCCA
* *
46737 TTGAACGATGACAGGGGCCTC
1 TTGAACGATGAGAGGAGCCTC
* * * *
46758 TTAAACGGTGGGAGGGGCCTC
1 TTGAACGATGAGAGGAGCCTC
46779 TTGAACGATGAGAGGAGCCTC
1 TTGAACGATGAGAGGAGCCTC
*
46800 TTGAACAAT-AG-GAGACGCCTC
1 TTGAACGATGAGAG-GA-GCCTC
46821 TTGAACGATGA
1 TTGAACGATGA
46832 CAGGTGAATC
Statistics
Matches: 61, Mismatches: 10, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
19 1 0.02
20 4 0.07
21 55 0.90
22 1 0.02
ACGTcount: A:0.27, C:0.20, G:0.33, T:0.20
Consensus pattern (21 bp):
TTGAACGATGAGAGGAGCCTC
Found at i:46996 original size:4 final size:4
Alignment explanation
Indices: 46975--47016 Score: 66
Period size: 4 Copynumber: 10.5 Consensus size: 4
46965 GGGCCGCTAA
* *
46975 AAAT AAAT TAAT ACAT AAAT AAAT AAAT AAAT AAAT AAAT AA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AA
47017 TGCCGAAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
4 34 1.00
ACGTcount: A:0.71, C:0.02, G:0.00, T:0.26
Consensus pattern (4 bp):
AAAT
Found at i:47137 original size:21 final size:21
Alignment explanation
Indices: 47113--47183 Score: 97
Period size: 21 Copynumber: 3.4 Consensus size: 21
47103 TGAAACAAAC
** *
47113 TCACGTAGAGCGGCTACCTCA
1 TCACGTAGAGTAGATACCTCA
*
47134 TCACGTAAAGTAGATACCTCA
1 TCACGTAGAGTAGATACCTCA
*
47155 TCACGTAGAGTAGATACCTTA
1 TCACGTAGAGTAGATACCTCA
47176 TCACGTAG
1 TCACGTAG
47184 CGCACCATTT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 44 1.00
ACGTcount: A:0.31, C:0.25, G:0.20, T:0.24
Consensus pattern (21 bp):
TCACGTAGAGTAGATACCTCA
Found at i:47336 original size:42 final size:42
Alignment explanation
Indices: 47220--47328 Score: 150
Period size: 42 Copynumber: 2.6 Consensus size: 42
47210 CCACCTCACT
* *
47220 ACGTAAAG-ACCGTACCTCATGACGCCATGCACCATTTTCTTC
1 ACGTAAAGTACCG-ATCTCATGACGCCATGCACCATTGTCTTC
*
47262 ACGTAAAGTACCGATCTCATGGCGCCATGCACCATTGTCTTC
1 ACGTAAAGTACCGATCTCATGACGCCATGCACCATTGTCTTC
*
47304 ACGTAAAGTACTGA-CATCATGACGC
1 ACGTAAAGTACCGATC-TCATGACGC
47329 AAAGCACCGA
Statistics
Matches: 60, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
41 1 0.02
42 55 0.92
43 4 0.07
ACGTcount: A:0.28, C:0.30, G:0.17, T:0.25
Consensus pattern (42 bp):
ACGTAAAGTACCGATCTCATGACGCCATGCACCATTGTCTTC
Found at i:49087 original size:19 final size:19
Alignment explanation
Indices: 49036--49089 Score: 63
Period size: 20 Copynumber: 2.7 Consensus size: 19
49026 AGAAGTTTCT
* *
49036 GAAACTTAAATTCGCAATGC
1 GAAAC-TAAAATCGCAACGC
*
49056 GAAAATGAAAATCGCAACGC
1 GAAACT-AAAATCGCAACGC
49076 GAAACTAAAATCGC
1 GAAACTAAAATCGC
49090 GTTGCGATTT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
19 9 0.31
20 20 0.69
ACGTcount: A:0.46, C:0.20, G:0.17, T:0.17
Consensus pattern (19 bp):
GAAACTAAAATCGCAACGC
Found at i:49434 original size:22 final size:22
Alignment explanation
Indices: 49404--49454 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
49394 GATGGAGATA
*
49404 GACGAATTTCGCCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
* *
49426 GACGGATTTTGTCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
49448 GACGGAT
1 GACGGAT
49455 GGAGATGGGA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.22, C:0.14, G:0.43, T:0.22
Consensus pattern (22 bp):
GACGGATTTCGCCGGAGATGGG
Found at i:49767 original size:80 final size:79
Alignment explanation
Indices: 49670--49923 Score: 277
Period size: 80 Copynumber: 3.2 Consensus size: 79
49660 TTTGACTTAT
* *
49670 GTGTTGCGAATTTGACTTTTGTGTTGCGATTTACAAACTCGCGTTGCGATTTACAAATTCGCGTT
1 GTGTTGCGAATTTGACTTATGTGTTGCGATTTACAAA-TCGCGTTGCGATTTACAAATTCGCATT
49735 GCGATTTACAGATTC
65 GCGATTTACAGATTC
* * * *
49750 GTGTTGCGAATTTGACTTCA-GTGTTGCGAATTTGAC-TATCACGTTGCAAATTTGAC-TA-TCG
1 GTGTTGCGAATTTGACTT-ATGTGTTGCG-ATTT-ACAAATCGCGTTGC-GATTT-ACAAATTCG
* * *
49811 CATTACGAATTTGAC--TTTT
61 CATTGCG-ATTT-ACAGATTC
* * *
49830 GTGTTGCGAATTTGACTTATGTGTTACGATTTACAAATTCGCGTTACGATTTACAAATTCGCTTT
1 GTGTTGCGAATTTGACTTATGTGTTGCGATTTACAAA-TCGCGTTGCGATTTACAAATTCGCATT
49895 GCGATTTACAGATTC
65 GCGATTTACAGATTC
49910 GTGTTGCGAATTTG
1 GTGTTGCGAATTTG
49924 GAAAATCGAA
Statistics
Matches: 141, Mismatches: 19, Indels: 28
0.75 0.10 0.15
Matches are distributed among these distances:
78 6 0.04
79 15 0.11
80 100 0.71
81 14 0.10
82 6 0.04
ACGTcount: A:0.23, C:0.16, G:0.21, T:0.40
Consensus pattern (79 bp):
GTGTTGCGAATTTGACTTATGTGTTGCGATTTACAAATCGCGTTGCGATTTACAAATTCGCATTG
CGATTTACAGATTC
Found at i:49795 original size:60 final size:60
Alignment explanation
Indices: 49592--49846 Score: 213
Period size: 60 Copynumber: 4.2 Consensus size: 60
49582 TAAACGGGCT
* * *
49592 TTGCGAATTTGACTATCGCGTTGCGAATTTGACTTTTGTGTTGCGAATTTGAAATTCAGTG
1 TTGCGAATTTGACTATCGCGTTGCGAATTTGACATTCGTGTTGCGAATTTG-ACTTCAGTG
* * * * *
49653 TTGCGAATTTGACTTAT-GTGTTGCGAATTTGACTTTTGTGTTGCG-ATTT-ACAAACTC-GCG
1 TTGCGAATTTGAC-TATCGCGTTGCGAATTTGACATTCGTGTTGCGAATTTGAC---TTCAGTG
*
49713 TTGCG-ATTT-ACAAATTCGCGTTGCG-ATTT-ACAGATTCGTGTTGCGAATTTGACTTCAGTG
1 TTGCGAATTTGAC-TA-TCGCGTTGCGAATTTGAC--ATTCGTGTTGCGAATTTGACTTCAGTG
* * ** * **
49773 TTGCGAATTTGACTATCACGTTGCAAATTTGAC-TATCGCATTACGAATTTGACTTTTGTG
1 TTGCGAATTTGACTATCGCGTTGCGAATTTGACAT-TCGTGTTGCGAATTTGACTTCAGTG
49833 TTGCGAATTTGACT
1 TTGCGAATTTGACT
49847 TATGTGTTAC
Statistics
Matches: 159, Mismatches: 19, Indels: 33
0.75 0.09 0.16
Matches are distributed among these distances:
58 6 0.04
59 12 0.08
60 77 0.48
61 55 0.35
62 9 0.06
ACGTcount: A:0.22, C:0.15, G:0.22, T:0.40
Consensus pattern (60 bp):
TTGCGAATTTGACTATCGCGTTGCGAATTTGACATTCGTGTTGCGAATTTGACTTCAGTG
Found at i:49847 original size:20 final size:20
Alignment explanation
Indices: 49592--49847 Score: 186
Period size: 20 Copynumber: 12.8 Consensus size: 20
49582 TAAACGGGCT
* *
49592 TTGCGAATTTGACTATCGCG
1 TTGCGAATTTGACTTTCGTG
*
49612 TTGCGAATTTGACTTTTGTG
1 TTGCGAATTTGACTTTCGTG
**
49632 TTGCGAATTTGAAATTCAGTG
1 TTGCGAATTTGACTTTC-GTG
49653 TTGCGAATTTGACTTAT-GTG
1 TTGCGAATTTGACTT-TCGTG
*
49673 TTGCGAATTTGACTTTTGTG
1 TTGCGAATTTGACTTTCGTG
** *
49693 TTGCG-ATTT-ACAAACTCGCG
1 TTGCGAATTTGAC--TTTCGTG
* *
49713 TTGCG-ATTT-ACAAATTCGCG
1 TTGCGAATTTGAC--TTTCGTG
*
49733 TTGCG-ATTT-ACAGATTCGTG
1 TTGCGAATTTGAC--TTTCGTG
49753 TTGCGAATTTGAC-TTCAGTG
1 TTGCGAATTTGACTTTC-GTG
* **
49773 TTGCGAATTTGACTATCACG
1 TTGCGAATTTGACTTTCGTG
* * **
49793 TTGCAAATTTGACTATCGCA
1 TTGCGAATTTGACTTTCGTG
* *
49813 TTACGAATTTGACTTTTGTG
1 TTGCGAATTTGACTTTCGTG
49833 TTGCGAATTTGACTT
1 TTGCGAATTTGACTT
49848 ATGTGTTACG
Statistics
Matches: 199, Mismatches: 28, Indels: 18
0.81 0.11 0.07
Matches are distributed among these distances:
18 2 0.01
19 8 0.04
20 164 0.82
21 22 0.11
22 3 0.02
ACGTcount: A:0.22, C:0.15, G:0.22, T:0.41
Consensus pattern (20 bp):
TTGCGAATTTGACTTTCGTG
Found at i:49877 original size:20 final size:20
Alignment explanation
Indices: 49852--49910 Score: 91
Period size: 20 Copynumber: 3.0 Consensus size: 20
49842 TGACTTATGT
49852 GTTACGATTTACAAATTCGC
1 GTTACGATTTACAAATTCGC
49872 GTTACGATTTACAAATTCGC
1 GTTACGATTTACAAATTCGC
* * *
49892 TTTGCGATTTACAGATTCG
1 GTTACGATTTACAAATTCG
49911 TGTTGCGAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 36 1.00
ACGTcount: A:0.27, C:0.19, G:0.17, T:0.37
Consensus pattern (20 bp):
GTTACGATTTACAAATTCGC
Found at i:49877 original size:60 final size:60
Alignment explanation
Indices: 49731--49878 Score: 140
Period size: 60 Copynumber: 2.5 Consensus size: 60
49721 TACAAATTCG
* * * *
49731 CGTTGCGATTTACAGATTCGTGTTGCGAATTTGACTTCAGTGTTGCGAATTTGACTATCA
1 CGTTACGATTTACAAATTCGCGTTACGAATTTGACTTCAGTGTTGCGAATTTGACTATCA
* * * * ** *
49791 CGTTGCAAATTTGAC-TA-TCGCATTACGAATTTGACTTTTGTGTTGCGAATTTGACTTAT-G
1 CGTTAC-GATTT-ACAAATTCGCGTTACGAATTTGACTTCAGTGTTGCGAATTTGAC-TATCA
*
49851 TGTTACGATTTACAAATTCGCGTTACGA
1 CGTTACGATTTACAAATTCGCGTTACGA
49879 TTTACAAATT
Statistics
Matches: 70, Mismatches: 13, Indels: 10
0.75 0.14 0.11
Matches are distributed among these distances:
58 2 0.03
59 5 0.07
60 53 0.76
61 8 0.11
62 2 0.03
ACGTcount: A:0.24, C:0.16, G:0.21, T:0.39
Consensus pattern (60 bp):
CGTTACGATTTACAAATTCGCGTTACGAATTTGACTTCAGTGTTGCGAATTTGACTATCA
Found at i:51341 original size:31 final size:30
Alignment explanation
Indices: 51306--51407 Score: 80
Period size: 31 Copynumber: 3.2 Consensus size: 30
51296 GTCGGTGTTG
51306 AACCTATACAAGGAATTACCAGTATCGACTA
1 AACCTATACAAGGAATTACCAG-ATCGACTA
* * *
51337 AACCTGCCAGAGATAAGAATTACCAG-TCGATGCTA
1 AACCT---ATACA-AGGAATTACCAGATCGA--CTA
* *
51372 AACCTATACAAGGAATTACCAGCAACGACTG
1 AACCTATACAAGGAATTACCAG-ATCGACTA
51403 AACCT
1 AACCT
51408 TTCAGATTCT
Statistics
Matches: 55, Mismatches: 8, Indels: 16
0.70 0.10 0.20
Matches are distributed among these distances:
31 23 0.42
32 3 0.05
33 7 0.13
34 3 0.05
35 19 0.35
ACGTcount: A:0.40, C:0.25, G:0.16, T:0.20
Consensus pattern (30 bp):
AACCTATACAAGGAATTACCAGATCGACTA
Found at i:51393 original size:66 final size:67
Alignment explanation
Indices: 51282--51407 Score: 191
Period size: 66 Copynumber: 1.9 Consensus size: 67
51272 CCTTAGGTTC
* * * * *
51282 ATAAGGAATTACCAGTCGGTGTTGAACCTATACAAGGAATTACCAGTATCGACTAAACCTGCCAG
1 ATAAGGAATTACCAGTCGATGCTAAACCTATACAAGGAATTACCAGCAACGACTAAACCTGCCAG
51347 AG
66 AG
*
51349 ATAA-GAATTACCAGTCGATGCTAAACCTATACAAGGAATTACCAGCAACGACTGAACCT
1 ATAAGGAATTACCAGTCGATGCTAAACCTATACAAGGAATTACCAGCAACGACTAAACCT
51408 TTCAGATTCT
Statistics
Matches: 53, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
66 49 0.92
67 4 0.08
ACGTcount: A:0.38, C:0.22, G:0.18, T:0.21
Consensus pattern (67 bp):
ATAAGGAATTACCAGTCGATGCTAAACCTATACAAGGAATTACCAGCAACGACTAAACCTGCCAG
AG
Found at i:53074 original size:13 final size:13
Alignment explanation
Indices: 53056--53099 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
53046 TTGAATTTTT
53056 CGGTCAAAGTCAA
1 CGGTCAAAGTCAA
53069 CGGTCAAATAGTCAAA
1 CGGTC-AA-AGTC-AA
*
53085 CAGTCAAAGTCAA
1 CGGTCAAAGTCAA
53098 CG
1 CG
53100 ATCTGACCGG
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
13 8 0.31
14 6 0.23
15 6 0.23
16 6 0.23
ACGTcount: A:0.41, C:0.23, G:0.20, T:0.16
Consensus pattern (13 bp):
CGGTCAAAGTCAA
Found at i:63406 original size:16 final size:16
Alignment explanation
Indices: 63385--63441 Score: 96
Period size: 16 Copynumber: 3.6 Consensus size: 16
63375 CATTTAATAA
63385 ATAAACGAACACGAAC
1 ATAAACGAACACGAAC
*
63401 ATAAACGAACACGAAA
1 ATAAACGAACACGAAC
*
63417 ATAAATGAACACGAAC
1 ATAAACGAACACGAAC
63433 ATAAACGAA
1 ATAAACGAA
63442 TATAAACGTT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 37 1.00
ACGTcount: A:0.60, C:0.19, G:0.12, T:0.09
Consensus pattern (16 bp):
ATAAACGAACACGAAC
Found at i:64562 original size:14 final size:14
Alignment explanation
Indices: 64545--64600 Score: 84
Period size: 14 Copynumber: 4.3 Consensus size: 14
64535 AATGAATATA
64545 AACGAACATAACCG
1 AACGAACATAACCG
64559 AACGAACAT-A---
1 AACGAACATAACCG
64569 AACGAACATAACCG
1 AACGAACATAACCG
64583 AACGAACATAACCG
1 AACGAACATAACCG
64597 AACG
1 AACG
64601 TTCATGAACG
Statistics
Matches: 38, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
10 9 0.24
11 1 0.03
13 1 0.03
14 27 0.71
ACGTcount: A:0.52, C:0.27, G:0.14, T:0.07
Consensus pattern (14 bp):
AACGAACATAACCG
Found at i:64569 original size:24 final size:24
Alignment explanation
Indices: 64542--64599 Score: 107
Period size: 24 Copynumber: 2.4 Consensus size: 24
64532 ATGAATGAAT
64542 ATAAACGAACATAACCGAACGAAC
1 ATAAACGAACATAACCGAACGAAC
64566 ATAAACGAACATAACCGAACGAAC
1 ATAAACGAACATAACCGAACGAAC
*
64590 ATAACCGAAC
1 ATAAACGAAC
64600 GTTCATGAAC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.53, C:0.26, G:0.12, T:0.09
Consensus pattern (24 bp):
ATAAACGAACATAACCGAACGAAC
Found at i:65780 original size:20 final size:20
Alignment explanation
Indices: 65743--65780 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
65733 TTTTAATTCA
*
65743 TAAAATTATAATTATATTTT
1 TAAAAATATAATTATATTTT
65763 TAAAAATATGAATT-TATT
1 TAAAAATAT-AATTATATT
65781 AATTGACAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
20 12 0.75
21 4 0.25
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (20 bp):
TAAAAATATAATTATATTTT
Found at i:69057 original size:97 final size:96
Alignment explanation
Indices: 68864--69057 Score: 345
Period size: 99 Copynumber: 2.0 Consensus size: 96
68854 CCATAGAAAA
68864 TTAGAGCCTACCCGAAACCACATTCCAAAACCTATATTATTACCCTAACCATGTCTTTTTTTTCC
1 TTAGAGCCTACCCGAAACCACATTCCAAAACCTATATTATTACCCTAACCATGTCTTTTTTTTCC
68929 TTTCATTCTTTTATTTATTTATTTATTTTTTT
66 TTTCATTCTTTTATTTATTTATTTA-TTTTTT
68961 TTAGAGCCTACCCGAAACCACATTCCAAAACCTAGGATATTATTACCCTAACCATGTC-TTTTTT
1 TTAGAGCCTACCCGAAACCACATTCCAAAACCT---ATATTATTACCCTAACCATGTCTTTTTTT
69025 TCCTTTCATTCTTTTATTTATTTATTTATTTTT
63 TCCTTTCATTCTTTTATTTATTTATTTATTTTT
69058 ATTTTACTTT
Statistics
Matches: 94, Mismatches: 0, Indels: 5
0.95 0.00 0.05
Matches are distributed among these distances:
97 33 0.35
98 5 0.05
99 34 0.36
100 22 0.23
ACGTcount: A:0.25, C:0.23, G:0.05, T:0.47
Consensus pattern (96 bp):
TTAGAGCCTACCCGAAACCACATTCCAAAACCTATATTATTACCCTAACCATGTCTTTTTTTTCC
TTTCATTCTTTTATTTATTTATTTATTTTTT
Found at i:69316 original size:70 final size:69
Alignment explanation
Indices: 69203--69334 Score: 255
Period size: 70 Copynumber: 1.9 Consensus size: 69
69193 AATACAGAGG
69203 ACATTCTACAAGGCGACTATGTGTCACATTCAATCCCGAAGACGTGGCGCCCATAATTGAATAGT
1 ACATTCTACAAGGCGACTATGTGTCACATTCAATCCCGAAGACGTGGCGCCCAT-ATTGAATAGT
69268 AATAC
65 AATAC
69273 ACATTCTACAAGGCGACTATGTGTCACATTCAATCCCGAAGACGTGGCGCCCATATTGAATA
1 ACATTCTACAAGGCGACTATGTGTCACATTCAATCCCGAAGACGTGGCGCCCATATTGAATA
69335 TATCACTCTG
Statistics
Matches: 62, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
69 8 0.13
70 54 0.87
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.24
Consensus pattern (69 bp):
ACATTCTACAAGGCGACTATGTGTCACATTCAATCCCGAAGACGTGGCGCCCATATTGAATAGTA
ATAC
Found at i:72133 original size:95 final size:94
Alignment explanation
Indices: 71955--72194 Score: 265
Period size: 95 Copynumber: 2.7 Consensus size: 94
71945 TATAATATTA
* * *
71955 TATATATACAATAAAGCTTGAGTTATCCCTCTAGAGTAATTGGTTAAACTCCCCGACTTTATGGA
1 TATATATACAATAAAGCTTGAGCTATCCCTCTAGAGCAATTGGTTAAACGCCCCGACTTTATGGA
*
72020 TAATATTCAACTAGCCTGATAAAGGTGAT
66 TAATATTCAACTACCCTGATAAAGGTGAT
*
72049 TATACTATACAATAAAGCTTGAGCTGTCCCTCTA-AGGCAATTGGTTAAACGCCCCGACTTTATG
1 TATA-TATACAATAAAGCTTGAGCTATCCCTCTAGA-GCAATTGGTTAAACGCCCCGACTTTATG
* *
72113 GATAAGT-TTTAGCTACCCTGATAAA--TG--
64 GATAA-TATTCAACTACCCTGATAAAGGTGAT
* * *
72140 TAT-T-TGC-AT--A--TTGAGTTGTCCCTCTAGAGCAATTGGTTAAACGCCCCG-CTTTATG
1 TATATATACAATAAAGCTTGAGCTATCCCTCTAGAGCAATTGGTTAAACGCCCCGACTTTATG
72195 AATTCAGCTA
Statistics
Matches: 133, Mismatches: 9, Indels: 20
0.82 0.06 0.12
Matches are distributed among these distances:
82 7 0.05
83 35 0.26
84 1 0.01
85 1 0.01
87 2 0.02
88 2 0.02
89 1 0.01
91 3 0.02
93 2 0.02
94 5 0.04
95 73 0.55
96 1 0.01
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (94 bp):
TATATATACAATAAAGCTTGAGCTATCCCTCTAGAGCAATTGGTTAAACGCCCCGACTTTATGGA
TAATATTCAACTACCCTGATAAAGGTGAT
Found at i:73464 original size:36 final size:34
Alignment explanation
Indices: 73412--73539 Score: 98
Period size: 36 Copynumber: 3.7 Consensus size: 34
73402 ACTGCAGATG
* *
73412 ATTTATCTCACTTGAGATTGTTTTTCTTAAAATAA
1 ATTTGTCTCACTTGAGACTGTTTTTCTTAAAA-AA
* * * *
73447 ACTTTGTCTCACTTGAGACTGATTTACTT-TAAAG
1 A-TTTGTCTCACTTGAGACTGTTTTTCTTAAAAAA
* * ** * *
73481 ATTTATTTCACTCAAAATTG-TTTTCTTAAAACAAA
1 ATTTGTCTCACTTGAGACTGTTTTTCTT-AAA-AAA
73516 ATTTGTCTCACTTGAGACTGTTTT
1 ATTTGTCTCACTTGAGACTGTTTT
73540 CACTCGAAAG
Statistics
Matches: 67, Mismatches: 21, Indels: 9
0.69 0.22 0.09
Matches are distributed among these distances:
32 6 0.09
33 13 0.19
34 3 0.04
35 19 0.28
36 26 0.39
ACGTcount: A:0.30, C:0.15, G:0.10, T:0.45
Consensus pattern (34 bp):
ATTTGTCTCACTTGAGACTGTTTTTCTTAAAAAA
Found at i:73578 original size:75 final size:68
Alignment explanation
Indices: 73433--73579 Score: 168
Period size: 68 Copynumber: 2.1 Consensus size: 68
73423 TTGAGATTGT
* * **
73433 TTTTCTTAAAATAAACTTTGTCTCACTTGAGACTGATTTACTTTAAAGATTTATTTCACTCAAAA
1 TTTTCTTAAAACAAAATTTGTCTCACTTGAGACTGATTTACTAAAAAGATTTATTTCACTCAAAA
*
73498 TTG
66 CTG
*
73501 TTTTCTTAAAACAAAATTTGTCTCACTTGAGACTGTTTTCACTCGAAAGAAGGCATTTCATTTCA
1 TTTTCTTAAAACAAAATTTGTCTCACTTGAGACTGATTT-ACT--AAA-AA-G-ATTT-ATTTCA
*
73566 CTCAAGACTG
59 CTCAAAACTG
73576 TTTT
1 TTTT
73580 TAAAGAAAAT
Statistics
Matches: 65, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
68 36 0.55
69 3 0.05
71 1 0.02
72 2 0.03
73 1 0.02
74 4 0.06
75 18 0.28
ACGTcount: A:0.31, C:0.17, G:0.11, T:0.41
Consensus pattern (68 bp):
TTTTCTTAAAACAAAATTTGTCTCACTTGAGACTGATTTACTAAAAAGATTTATTTCACTCAAAA
CTG
Found at i:73628 original size:37 final size:37
Alignment explanation
Indices: 73585--73659 Score: 114
Period size: 37 Copynumber: 2.0 Consensus size: 37
73575 GTTTTTAAAG
*
73585 AAAATTTTATCTCGCTTGAGATAGTTTCCCTTAAAAC
1 AAAATTTTATCTCCCTTGAGATAGTTTCCCTTAAAAC
* * *
73622 AAAATTTTGTCTCCCTTGAGATAGTTTCTCTTGAAAC
1 AAAATTTTATCTCCCTTGAGATAGTTTCCCTTAAAAC
73659 A
1 A
73660 TAAACATTGA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 34 1.00
ACGTcount: A:0.31, C:0.19, G:0.12, T:0.39
Consensus pattern (37 bp):
AAAATTTTATCTCCCTTGAGATAGTTTCCCTTAAAAC
Found at i:73724 original size:102 final size:102
Alignment explanation
Indices: 73587--73965 Score: 612
Period size: 102 Copynumber: 3.8 Consensus size: 102
73577 TTTTAAAGAA
* * * *
73587 AATTTTATCTCGCTTGAGATAGTTTCCCTTAAAACAAAATTTTGTCTCCCTTGAGATAGTTTCTC
1 AATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCTC
*
73652 TTGAAACATAAACATTGAAAACATTTCACTTGAAATG
66 TTGAAACATAAACATTGAAAACATTTCCCTTGAAATG
73689 AATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCTC
1 AATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCTC
* *
73754 TTTAAACATAAACATTGAAAACATTTCCCTTAAAATG
66 TTGAAACATAAACATTGAAAACATTTCCCTTGAAATG
*
73791 AA-----T-T-T-TTGAGATAGTTTCCCTTGAAACAAAATTGTGTCTCCCTTGAGACAGTTTCTC
1 AATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCTC
73848 TTGAAACATAAACATTGAAAACATTTCCCTTGAAATG
66 TTGAAACATAAACATTGAAAACATTTCCCTTGAAATG
* *
73885 AATTTTGTCTCTCTTGAGTTAGTTTCCATTGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCTC
1 AATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCTC
73950 TTGAAACATAAACATT
66 TTGAAACATAAACATT
73966 TCCCTTGAAA
Statistics
Matches: 256, Mismatches: 13, Indels: 16
0.90 0.05 0.06
Matches are distributed among these distances:
94 88 0.34
95 1 0.00
96 1 0.00
97 1 0.00
99 1 0.00
100 1 0.00
101 1 0.00
102 162 0.63
ACGTcount: A:0.32, C:0.18, G:0.12, T:0.38
Consensus pattern (102 bp):
AATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCTC
TTGAAACATAAACATTGAAAACATTTCCCTTGAAATG
Found at i:73732 original size:37 final size:37
Alignment explanation
Indices: 73689--73761 Score: 110
Period size: 37 Copynumber: 2.0 Consensus size: 37
73679 ACTTGAAATG
* *
73689 AATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAA
1 AATTTTGTCTCCCTTGAGACAGTTTCCCTTGAAACAA
* *
73726 AATTTTGTCTCCCTTGAGACAGTTTCTCTTTAAACA
1 AATTTTGTCTCCCTTGAGACAGTTTCCCTTGAAACA
73762 TAAACATTGA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.26, C:0.21, G:0.12, T:0.41
Consensus pattern (37 bp):
AATTTTGTCTCCCTTGAGACAGTTTCCCTTGAAACAA
Found at i:73932 original size:37 final size:37
Alignment explanation
Indices: 73885--74042 Score: 104
Period size: 37 Copynumber: 4.0 Consensus size: 37
73875 CCTTGAAATG
* **
73885 AATTTTGTCTCTCTTGAGTTAGTTTC-CATTGAAACAA
1 AATTTTGTCTCCCTTGAGACAGTTTCTC-TTGAAACAA
73922 AATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAA
1 AATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAAC--AA
* ** * *
73961 ACATTTCCCTTGAAATGAAT-TTTTAAGATAGTTTCTCTTGAAACAA
1 A-A-TT---TTG---T--CTCCCTTGAGACAGTTTCTCTTGAAACAA
*
74007 AATTTTGTCTCCCTTGAGACAATTTCTCTTGAAACA
1 AATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACA
74043 TAAACATTGA
Statistics
Matches: 93, Mismatches: 14, Indels: 28
0.69 0.10 0.21
Matches are distributed among these distances:
36 1 0.01
37 50 0.54
38 2 0.02
39 3 0.03
40 1 0.01
41 5 0.05
44 5 0.05
45 1 0.01
46 3 0.03
47 1 0.01
48 20 0.22
49 1 0.01
ACGTcount: A:0.30, C:0.18, G:0.12, T:0.40
Consensus pattern (37 bp):
AATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACAA
Found at i:73934 original size:196 final size:196
Alignment explanation
Indices: 73600--74273 Score: 1013
Period size: 196 Copynumber: 3.5 Consensus size: 196
73590 TTTATCTCGC
* *
73600 TTGAGATAGTTTCCCTTAAAACAAAATTTTGTCTCCCTTGAGATAGTTTCTCTTGAAACATAAAC
1 TTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAAC
*
73665 ATTGAAAACATTTCACTTGAAATGAATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATT
66 ATTGAAAACATTTCCCTTGAAATGAATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATT
*
73730 TTGTCTCCCTTGAGACAGTTTCTCTTTAAACATAAACATTGAAAACATTTCCCTTAAAATGAATT
131 TTGTCTCCCTTGAGACAGTTTCTCTTTAAACATAAACATTGAAAACATTTCCCTTGAAATGAATT
73795 T
196 T
*
73796 TTGAGATAGTTTCCCTTGAAACAAAATTGTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAAC
1 TTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAAC
* *
73861 ATTGAAAACATTTCCCTTGAAATGAATTTTGTCTCTCTTGAGTTAGTTTCCATTGAAACAAAATT
66 ATTGAAAACATTTCCCTTGAAATGAATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATT
*
73926 TTGTCTCCCTTGAGACAGTTTCTC-TT-----GAAACA-T--AAACATTTCCCTTGAAATGAATT
131 TTGTCTCCCTTGAGACAGTTTCTCTTTAAACATAAACATTGAAAACATTTCCCTTGAAATGAATT
73982 T
196 T
* * *
73983 TTAAGATAGTTTCTCTTGAAACAAAATTTTGTCTCCCTTGAGACAATTTCTCTTGAAACATAAAC
1 TTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAAC
74048 ATTGAAAACATTTCCCTTGAAATGAA-----T-T-T-TTGAGATAGTTTCCCTTGAAACAAAATT
66 ATTGAAAACATTTCCCTTGAAATGAATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATT
*
74105 TTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACATTGAAAACATTTCCCTTGAAATGAATT
131 TTGTCTCCCTTGAGACAGTTTCTCTTTAAACATAAACATTGAAAACATTTCCCTTGAAATGAA--
74170 TTGTCTCT
194 ---T-T-T
* * *
74178 CTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCATTGAGATAGTTTCTCTTGAAATATAAA
1 -TTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAA
*
74243 CACTGAAAACATTTCCCTTGAAATGAATTTT
65 CATTGAAAACATTTCCCTTGAAATGAATTTT
74274 TGAGATAGTT
Statistics
Matches: 434, Mismatches: 23, Indels: 38
0.88 0.05 0.08
Matches are distributed among these distances:
179 50 0.12
180 2 0.00
181 1 0.00
182 1 0.00
185 5 0.01
186 1 0.00
187 110 0.25
188 21 0.05
189 1 0.00
190 5 0.01
193 1 0.00
194 1 0.00
195 3 0.01
196 232 0.53
ACGTcount: A:0.32, C:0.18, G:0.12, T:0.38
Consensus pattern (196 bp):
TTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAAC
ATTGAAAACATTTCCCTTGAAATGAATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATT
TTGTCTCCCTTGAGACAGTTTCTCTTTAAACATAAACATTGAAAACATTTCCCTTGAAATGAATT
T
Found at i:74076 original size:94 final size:94
Alignment explanation
Indices: 73959--74296 Score: 532
Period size: 94 Copynumber: 3.5 Consensus size: 94
73949 CTTGAAACAT
* *
73959 AAACATTTCCCTTGAAATGAATTTTTAAGATAGTTTCTCTTGAAACAAAATTTTGTCTCCCTTGA
1 AAACATTTCCCTTGAAATGAATTTTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCTTGA
*
74024 GACAATTTCTCTTGAAACATAAACATTGA
66 GACAGTTTCTCTTGAAACATAAACATTGA
74053 AAACATTTCCCTTGAAATGAATTTTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCTTGA
1 AAACATTTCCCTTGAAATGAATTTTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCTTGA
74118 GACAGTTTCTCTTGAAACATAAACATTGA
66 GACAGTTTCTCTTGAAACATAAACATTGA
74147 AAACATTTCCCTTGAAATGAATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTC
1 AAACATTTCCCTTGAAATGAA-----T-T-T-TTGAGATAGTTTCCCTTGAAACAAAATTTTGTC
* * * *
74212 TCCATTGAGATAGTTTCTCTTGAAATATAAACACTGA
58 TCCCTTGAGACAGTTTCTCTTGAAACATAAACATTGA
*
74249 AAACATTTCCCTTGAAATGAATTTTTGAGATAGTTCCCCTTGAAACAA
1 AAACATTTCCCTTGAAATGAATTTTTGAGATAGTTTCCCTTGAAACAA
74297 CCTTTGAGAC
Statistics
Matches: 228, Mismatches: 8, Indels: 16
0.90 0.03 0.06
Matches are distributed among these distances:
94 135 0.59
95 1 0.00
96 1 0.00
97 1 0.00
99 1 0.00
100 1 0.00
101 1 0.00
102 87 0.38
ACGTcount: A:0.33, C:0.18, G:0.12, T:0.37
Consensus pattern (94 bp):
AAACATTTCCCTTGAAATGAATTTTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCTTGA
GACAGTTTCTCTTGAAACATAAACATTGA
Found at i:74199 original size:36 final size:36
Alignment explanation
Indices: 74152--74238 Score: 122
Period size: 37 Copynumber: 2.4 Consensus size: 36
74142 ATTGAAAACA
*
74152 TTTCCCTTGAAATGAATTTTGTCTCTC-TTGAGATAG
1 TTTCCCTTGAAATAAATTTTGTCTC-CATTGAGATAG
*
74188 TTTCCCTTGAAACAAAATTTTGTCTCCATTGAGATAG
1 TTTCCCTTGAAA-TAAATTTTGTCTCCATTGAGATAG
*
74225 TTTCTCTTGAAATA
1 TTTCCCTTGAAATA
74239 TAAACACTGA
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
36 14 0.31
37 31 0.69
ACGTcount: A:0.26, C:0.17, G:0.14, T:0.43
Consensus pattern (36 bp):
TTTCCCTTGAAATAAATTTTGTCTCCATTGAGATAG
Found at i:74202 original size:102 final size:102
Alignment explanation
Indices: 74077--74273 Score: 358
Period size: 102 Copynumber: 1.9 Consensus size: 102
74067 AAATGAATTT
*
74077 TTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAAC
1 TTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCATTGAGACAGTTTCTCTTGAAACATAAAC
*
74142 ATTGAAAACATTTCCCTTGAAATGAATTTTGTCTCTC
66 ACTGAAAACATTTCCCTTGAAATGAATTTTGTCTCTC
* *
74179 TTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCATTGAGATAGTTTCTCTTGAAATATAAAC
1 TTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCATTGAGACAGTTTCTCTTGAAACATAAAC
74244 ACTGAAAACATTTCCCTTGAAATGAATTTT
66 ACTGAAAACATTTCCCTTGAAATGAATTTT
74274 TGAGATAGTT
Statistics
Matches: 91, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
102 91 1.00
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.38
Consensus pattern (102 bp):
TTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCATTGAGACAGTTTCTCTTGAAACATAAAC
ACTGAAAACATTTCCCTTGAAATGAATTTTGTCTCTC
Found at i:74208 original size:281 final size:284
Alignment explanation
Indices: 73587--74296 Score: 1075
Period size: 281 Copynumber: 2.4 Consensus size: 284
73577 TTTTAAAGAA
* * *
73587 AATTTTATCTCGCTTGAGATAGTTTCCCTTAAAACAAAATTTTGTCTCCCTTGAGATAGTTTCTC
1 AATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGATAGTTTCTC
* *
73652 TTGAAACATAAACATTGAAAACATTTCACTTGAAATGAATTTTGTCTCTCTTGAGATAGTTTCCC
66 TTG----A-AAACACT-AAAACATTTCCCTTGAAATGAA-----T-T-T-TTGAGATAGTTTCCC
* *
73717 TTGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCTCTTTAAACATAAACATTGAAAACATTTCC
117 TTGAAACAAAATTTTGTCTCCCTTGAGACAATTTCTCTTGAAACATAAACATTGAAAACATTTCC
73782 CTTAAAATGAATTTTTGAGATAGTTTCCCTTGAAACAAAATTGTGTCTCCCTTGAGACAGTTTCT
182 CTTAAAATGAATTTTTGAGATAGTTTCCCTTGAAACAAAATTGTGTCTCCCTTGAGACAGTTTCT
73847 CTTGAAACATAAACATTGAAAACATTTCCCTTGAAATG
247 CTTGAAACATAAACATTGAAAACATTTCCCTTGAAATG
* * *
73885 AATTTTGTCTCTCTTGAGTTAGTTTCCATTGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCTC
1 AATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGATAGTTTCTC
* *
73950 TTG-AAACA-T-AAACATTTCCCTTGAAATGAATTTTTAAGATAGTTTCTCTTGAAACAAAATTT
66 TTGAAAACACTAAAACATTTCCCTTGAAATGAATTTTTGAGATAGTTTCCCTTGAAACAAAATTT
*
74012 TGTCTCCCTTGAGACAATTTCTCTTGAAACATAAACATTGAAAACATTTCCCTTGAAATGAATTT
131 TGTCTCCCTTGAGACAATTTCTCTTGAAACATAAACATTGAAAACATTTCCCTTAAAATGAATTT
*
74077 TTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAAC
196 TTGAGATAGTTTCCCTTGAAACAAAATTGTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAAC
74142 ATTGAAAACATTTCCCTTGAAATG
261 ATTGAAAACATTTCCCTTGAAATG
*
74166 AATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCATTGAGATAGTTTCTC
1 AATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGATAGTTTCTC
*
74231 TTGAAATATAAACACTGAAAACATTTCCCTTGAAATGAATTTTTGAGATAGTTCCCCTTGAAACA
66 TTG----A-AAACACT-AAAACATTTCCCTTGAAATGAATTTTTGAGATAGTTTCCCTTGAAACA
74296 A
125 A
74297 CCTTTGAGAC
Statistics
Matches: 383, Mismatches: 20, Indels: 26
0.89 0.05 0.06
Matches are distributed among these distances:
281 241 0.63
282 1 0.00
283 1 0.00
284 1 0.00
287 5 0.01
288 1 0.00
289 20 0.05
290 45 0.12
291 1 0.00
292 5 0.01
298 62 0.16
ACGTcount: A:0.32, C:0.18, G:0.12, T:0.37
Consensus pattern (284 bp):
AATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAACAAAATTTTGTCTCCCTTGAGATAGTTTCTC
TTGAAAACACTAAAACATTTCCCTTGAAATGAATTTTTGAGATAGTTTCCCTTGAAACAAAATTT
TGTCTCCCTTGAGACAATTTCTCTTGAAACATAAACATTGAAAACATTTCCCTTAAAATGAATTT
TTGAGATAGTTTCCCTTGAAACAAAATTGTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAAC
ATTGAAAACATTTCCCTTGAAATG
Found at i:74371 original size:36 final size:35
Alignment explanation
Indices: 74338--74433 Score: 84
Period size: 40 Copynumber: 2.6 Consensus size: 35
74328 CTTTGAGATT
*
74338 ATTTTTCTTGAAACAAATTTTATCTCGCTTGAGACA
1 ATTTTTCTTGAAACAAATTTTATCTCACTTGAGA-A
** *
74374 ATTCTCCCTTGAAACAAGAAATTTTATCTCACTCGAGAGA
1 ATT-TTTCTTGAAAC---AAATTTTATCTCACTTGAGA-A
* *
74414 GTTTTTCTTAAAACAAATTT
1 ATTTTTCTTGAAACAAATTT
74434 CTTATTCATT
Statistics
Matches: 47, Mismatches: 9, Indels: 8
0.73 0.14 0.12
Matches are distributed among these distances:
36 9 0.19
37 9 0.19
39 8 0.17
40 21 0.45
ACGTcount: A:0.33, C:0.18, G:0.10, T:0.39
Consensus pattern (35 bp):
ATTTTTCTTGAAACAAATTTTATCTCACTTGAGAA
Found at i:75958 original size:2 final size:2
Alignment explanation
Indices: 75951--75975 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
75941 TATTTCTCTA
75951 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
75976 CACGTCCATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:76283 original size:18 final size:17
Alignment explanation
Indices: 76262--76298 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 17
76252 ATTTTTTTAC
*
76262 TTATTATTTGTTTTACTT
1 TTATTATTTATTTT-CTT
76280 TTATTATTTATTTTCTT
1 TTATTATTTATTTTCTT
76297 TT
1 TT
76299 CCTTTCCTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 5 0.28
18 13 0.72
ACGTcount: A:0.16, C:0.05, G:0.03, T:0.76
Consensus pattern (17 bp):
TTATTATTTATTTTCTT
Found at i:76485 original size:9 final size:9
Alignment explanation
Indices: 76473--76531 Score: 68
Period size: 9 Copynumber: 6.4 Consensus size: 9
76463 CTTTTTTTTC
76473 TTTTCTTTA
1 TTTTCTTTA
76482 TTTTACTTTA
1 TTTT-CTTTA
76492 TTTGTC-TTA
1 TTT-TCTTTA
76501 TTTAT-TTTA
1 TTT-TCTTTA
*
76510 TTTTCTTCA
1 TTTTCTTTA
76519 TTTTCTTTA
1 TTTTCTTTA
76528 TTTT
1 TTTT
76532 ATACATTTTC
Statistics
Matches: 43, Mismatches: 3, Indels: 8
0.80 0.06 0.15
Matches are distributed among these distances:
8 1 0.02
9 32 0.74
10 9 0.21
11 1 0.02
ACGTcount: A:0.14, C:0.10, G:0.02, T:0.75
Consensus pattern (9 bp):
TTTTCTTTA
Found at i:76527 original size:23 final size:22
Alignment explanation
Indices: 76465--76533 Score: 68
Period size: 23 Copynumber: 3.0 Consensus size: 22
76455 CCTTTTTTCT
*
76465 TTTTTTTCTTTTCTTTATTTTA
1 TTTTATTCTTTTCTTTATTTTA
* *
76487 CTTTATT-TGTCTTATTTATTTTA
1 TTTTATTCT-T-TTCTTTATTTTA
*
76510 TTTTCTTCATTTTCTTTATTTTA
1 TTTTATTC-TTTTCTTTATTTTA
76533 T
1 T
76534 ACATTTTCAC
Statistics
Matches: 37, Mismatches: 6, Indels: 7
0.74 0.12 0.14
Matches are distributed among these distances:
21 1 0.03
22 6 0.16
23 28 0.76
24 1 0.03
25 1 0.03
ACGTcount: A:0.13, C:0.10, G:0.01, T:0.75
Consensus pattern (22 bp):
TTTTATTCTTTTCTTTATTTTA
Found at i:76538 original size:18 final size:18
Alignment explanation
Indices: 76506--76541 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
76496 TCTTATTTAT
* *
76506 TTTATTTTCTTCATTTTC
1 TTTATTTTATACATTTTC
76524 TTTATTTTATACATTTTC
1 TTTATTTTATACATTTTC
76542 ACTTGTTTTA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.17, C:0.14, G:0.00, T:0.69
Consensus pattern (18 bp):
TTTATTTTATACATTTTC
Found at i:77435 original size:20 final size:21
Alignment explanation
Indices: 77410--77461 Score: 61
Period size: 21 Copynumber: 2.5 Consensus size: 21
77400 TTTTCCCAAT
*
77410 TCGCAATGCGAA-TAAGTAAA
1 TCGCAATGCGAATTAAGAAAA
* **
77430 TCGCAACGCGAATTGGGAAAA
1 TCGCAATGCGAATTAAGAAAA
77451 TCGCAATGCGA
1 TCGCAATGCGA
77462 TACTGACTAT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 11 0.42
21 15 0.58
ACGTcount: A:0.38, C:0.19, G:0.25, T:0.17
Consensus pattern (21 bp):
TCGCAATGCGAATTAAGAAAA
Found at i:77475 original size:20 final size:20
Alignment explanation
Indices: 77450--77557 Score: 110
Period size: 20 Copynumber: 5.3 Consensus size: 20
77440 AATTGGGAAA
77450 ATCGCAATGCGATACTGACT
1 ATCGCAATGCGATACTGACT
*
77470 ATCGCAATGCGATACTTACT
1 ATCGCAATGCGATACTGACT
* *
77490 ATCGCAATGCGATAAT-ACAAA
1 ATCGCAATGCGATACTGAC--T
* *
77511 ATCGCAACGAGATACTGACT
1 ATCGCAATGCGATACTGACT
* * *
77531 TTCGCAACGCGATTCTGACT
1 ATCGCAATGCGATACTGACT
*
77551 TTCGCAA
1 ATCGCAA
77558 CGTGATTTAC
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
19 2 0.03
20 58 0.77
21 13 0.17
22 2 0.03
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.25
Consensus pattern (20 bp):
ATCGCAATGCGATACTGACT
Found at i:77558 original size:20 final size:20
Alignment explanation
Indices: 77512--77564 Score: 79
Period size: 20 Copynumber: 2.6 Consensus size: 20
77502 TAATACAAAA
*
77512 TCGCAACGAGATACTGACTT
1 TCGCAACGAGATTCTGACTT
*
77532 TCGCAACGCGATTCTGACTT
1 TCGCAACGAGATTCTGACTT
*
77552 TCGCAACGTGATT
1 TCGCAACGAGATT
77565 TACATAGCGC
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (20 bp):
TCGCAACGAGATTCTGACTT
Found at i:78163 original size:19 final size:19
Alignment explanation
Indices: 78141--78266 Score: 110
Period size: 19 Copynumber: 7.1 Consensus size: 19
78131 GAAACCAAAA
*
78141 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
78160 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
*
78174 TCTCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
78193 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
* **
78207 TCTCGTTGCGATAGTCATT
1 TCGCGTTGCGATTTTCATT
*
78226 TCGCGTTGCGATTCTCATT
1 TCGCGTTGCGATTTTCATT
*
78245 ATCTCGTTGCGATTTTCATT
1 -TCGCGTTGCGATTTTCATT
78265 TC
1 TC
78267 AACCAAAAGA
Statistics
Matches: 86, Mismatches: 10, Indels: 22
0.73 0.08 0.19
Matches are distributed among these distances:
14 20 0.23
16 5 0.06
17 6 0.07
19 38 0.44
20 17 0.20
ACGTcount: A:0.12, C:0.24, G:0.20, T:0.44
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:78182 original size:14 final size:14
Alignment explanation
Indices: 78163--78218 Score: 58
Period size: 14 Copynumber: 3.6 Consensus size: 14
78153 TTTCATTTCG
78163 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
78177 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
78196 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
78210 CGTTGCGAT
1 CGTTGCGAT
78219 AGTCATTTCG
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
14 19 0.54
16 3 0.09
17 3 0.09
19 10 0.29
ACGTcount: A:0.09, C:0.25, G:0.23, T:0.43
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:78188 original size:33 final size:33
Alignment explanation
Indices: 78146--78241 Score: 174
Period size: 33 Copynumber: 2.9 Consensus size: 33
78136 CAAAATCGCA
78146 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
78179 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
**
78212 TTGCGATAGTCATTTCGCGTTGCGATTCTC
1 TTGCGATTTTCATTTCGCGTTGCGATTCTC
78242 ATTATCTCGT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 61 1.00
ACGTcount: A:0.10, C:0.24, G:0.22, T:0.44
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
Found at i:80434 original size:42 final size:42
Alignment explanation
Indices: 80358--80560 Score: 194
Period size: 42 Copynumber: 4.8 Consensus size: 42
80348 GACTCGCCTG
* * * * * * *
80358 TCATCCCTCAAGAGTCCACTCCTATCGTTGAAGAGGCCCCTA
1 TCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCCACTA
*
80400 TCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCCACTG
1 TCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCCACTA
* * * * * * * *
80442 TCATCCCTCAAGAGTCCACTCCTATCATTGAAGAGGCCCCTA
1 TCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCCACTA
*
80484 TCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCCACTG
1 TCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCCACTA
* * *
80526 TCA-TCGTTGAAGAGGT-CCCTCCCACCATTCAAGAG
1 TCATTCCTCG-AGA-GTCCCCTCCCACCGTTCAAGAG
80561 CTCGATTCAC
Statistics
Matches: 130, Mismatches: 29, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
41 4 0.03
42 124 0.95
43 2 0.02
ACGTcount: A:0.23, C:0.37, G:0.18, T:0.23
Consensus pattern (42 bp):
TCATTCCTCGAGAGTCCCCTCCCACCGTTCAAGAGGCCACTA
Found at i:80518 original size:21 final size:21
Alignment explanation
Indices: 80494--80560 Score: 55
Period size: 21 Copynumber: 3.2 Consensus size: 21
80484 TCATTCCTCG
80494 AGAGTCCCCTCCCACCGTTCA
1 AGAGTCCCCTCCCACCGTTCA
* * ** * *
80515 AGAGGCCACTGTCATCGTTGA
1 AGAGTCCCCTCCCACCGTTCA
*
80536 AGAGGT-CCCTCCCACCATTCA
1 AGA-GTCCCCTCCCACCGTTCA
80557 AGAG
1 AGAG
80561 CTCGATTCAC
Statistics
Matches: 32, Mismatches: 13, Indels: 3
0.67 0.27 0.06
Matches are distributed among these distances:
20 1 0.03
21 30 0.94
22 1 0.03
ACGTcount: A:0.24, C:0.36, G:0.21, T:0.19
Consensus pattern (21 bp):
AGAGTCCCCTCCCACCGTTCA
Found at i:80539 original size:84 final size:84
Alignment explanation
Indices: 80355--80530 Score: 343
Period size: 84 Copynumber: 2.1 Consensus size: 84
80345 CTCGACTCGC
*
80355 CTGTCATCCCTCAAGAGTCCACTCCTATCGTTGAAGAGGCCCCTATCATTCCTCGAGAGTCCCCT
1 CTGTCATCCCTCAAGAGTCCACTCCTATCATTGAAGAGGCCCCTATCATTCCTCGAGAGTCCCCT
80420 CCCACCGTTCAAGAGGCCA
66 CCCACCGTTCAAGAGGCCA
80439 CTGTCATCCCTCAAGAGTCCACTCCTATCATTGAAGAGGCCCCTATCATTCCTCGAGAGTCCCCT
1 CTGTCATCCCTCAAGAGTCCACTCCTATCATTGAAGAGGCCCCTATCATTCCTCGAGAGTCCCCT
80504 CCCACCGTTCAAGAGGCCA
66 CCCACCGTTCAAGAGGCCA
80523 CTGTCATC
1 CTGTCATC
80531 GTTGAAGAGG
Statistics
Matches: 91, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
84 91 1.00
ACGTcount: A:0.22, C:0.38, G:0.17, T:0.23
Consensus pattern (84 bp):
CTGTCATCCCTCAAGAGTCCACTCCTATCATTGAAGAGGCCCCTATCATTCCTCGAGAGTCCCCT
CCCACCGTTCAAGAGGCCA
Found at i:80560 original size:84 final size:84
Alignment explanation
Indices: 80355--80560 Score: 306
Period size: 84 Copynumber: 2.5 Consensus size: 84
80345 CTCGACTCGC
* * * *
80355 CTGTCATCCCTCAAGAGTCCACTCCTATCGTTGAAGAGGCCCCTATCATTCCTCGAGAGTCCCCT
1 CTGTCATCCCTCAAGAGTCCACTCCCACCATTCAAGAGGCCCCTATCATTCCTCGAGAGTCCCCT
80420 CCCACCGTTCAAGAGGCCA
66 CCCACCGTTCAAGAGGCCA
* * *
80439 CTGTCATCCCTCAAGAGTCCACTCCTATCATTGAAGAGGCCCCTATCATTCCTCGAGAGTCCCCT
1 CTGTCATCCCTCAAGAGTCCACTCCCACCATTCAAGAGGCCCCTATCATTCCTCGAGAGTCCCCT
80504 CCCACCGTTCAAGAGGCCA
66 CCCACCGTTCAAGAGGCCA
** *
80523 CTGTCATCGTTGAAGAGGTCC-CTCCCACCATTCAAGAG
1 CTGTCATCCCTCAAGA-GTCCACTCCCACCATTCAAGAG
80561 CTCGATTCAC
Statistics
Matches: 114, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
84 110 0.96
85 4 0.04
ACGTcount: A:0.22, C:0.37, G:0.18, T:0.23
Consensus pattern (84 bp):
CTGTCATCCCTCAAGAGTCCACTCCCACCATTCAAGAGGCCCCTATCATTCCTCGAGAGTCCCCT
CCCACCGTTCAAGAGGCCA
Found at i:81937 original size:14 final size:14
Alignment explanation
Indices: 81918--81953 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
81908 ATTGTTTAAT
81918 TGATTTGTAAAAGG
1 TGATTTGTAAAAGG
*
81932 TGATTTGTAAAAGT
1 TGATTTGTAAAAGG
81946 TGATTTGT
1 TGATTTGT
81954 TTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.31, C:0.00, G:0.25, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGG
Found at i:82097 original size:14 final size:14
Alignment explanation
Indices: 82078--82134 Score: 51
Period size: 14 Copynumber: 3.7 Consensus size: 14
82068 GCGAAATGAA
82078 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
82092 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
82111 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
82125 AATTGCAACG
1 AATCGCAACG
82135 CGAAATTAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 10
0.73 0.06 0.21
Matches are distributed among these distances:
14 19 0.54
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 10 0.29
ACGTcount: A:0.44, C:0.21, G:0.25, T:0.11
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:82105 original size:33 final size:33
Alignment explanation
Indices: 82060--82149 Score: 144
Period size: 33 Copynumber: 2.7 Consensus size: 33
82050 AAAAAGTACT
*
82060 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1 ATCGCAACGCGAAATGAAAATCGCAACGAGAGA
82093 ATCGCAACGCGAAATGAAAATCGCAACGAGAGA
1 ATCGCAACGCGAAATGAAAATCGCAACGAGAGA
* * *
82126 ATTGCAACGCGAAATTAAATTCGC
1 ATCGCAACGCGAAATGAAAATCGC
82150 GTTGCGATTT
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 53 1.00
ACGTcount: A:0.43, C:0.20, G:0.22, T:0.14
Consensus pattern (33 bp):
ATCGCAACGCGAAATGAAAATCGCAACGAGAGA
Found at i:82119 original size:19 final size:19
Alignment explanation
Indices: 82060--82120 Score: 69
Period size: 19 Copynumber: 3.5 Consensus size: 19
82050 AAAAAGTACT
*
82060 ATCGCAATGCGAAATGAAA
1 ATCGCAACGCGAAATGAAA
*
82079 ATCGCAA--CG--A-GAGA
1 ATCGCAACGCGAAATGAAA
82093 ATCGCAACGCGAAATGAAA
1 ATCGCAACGCGAAATGAAA
82112 ATCGCAACG
1 ATCGCAACG
82121 AGAGAATTGC
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
14 10 0.29
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 19 0.54
ACGTcount: A:0.44, C:0.21, G:0.23, T:0.11
Consensus pattern (19 bp):
ATCGCAACGCGAAATGAAA
Found at i:82191 original size:33 final size:32
Alignment explanation
Indices: 82149--82275 Score: 166
Period size: 33 Copynumber: 3.9 Consensus size: 32
82139 ATTAAATTCG
82149 CGTTGCGATTTTCATTTCGCATTGCGATTCCCT
1 CGTTGCGATTTTCATTTCGCATTGCGATT-CCT
* **
82182 CGTTGCGATTTTCATTTAGCATTGCGAAATT-AG
1 CGTTGCGATTTTCATTTCGCATTGCG--ATTCCT
* *
82215 CGTTGCGATTTTCATTTCGCATTGCCAGTCTCT
1 CGTTGCGATTTTCATTTCGCATTGCGATTC-CT
82248 CGTTGCGATTTTCATTTCGCATTGCGAT
1 CGTTGCGATTTTCATTTCGCATTGCGAT
82276 AGTAATTTCC
Statistics
Matches: 80, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
31 2 0.03
33 75 0.94
35 3 0.04
ACGTcount: A:0.16, C:0.23, G:0.20, T:0.42
Consensus pattern (32 bp):
CGTTGCGATTTTCATTTCGCATTGCGATTCCT
Found at i:82222 original size:66 final size:66
Alignment explanation
Indices: 82142--82274 Score: 221
Period size: 66 Copynumber: 2.0 Consensus size: 66
82132 ACGCGAAATT
* * *
82142 AAATTCGCGTTGCGATTTTCATTTCGCATTGCGATTCCCTCGTTGCGATTTTCATTTAGCATTGC
1 AAATTAGCGTTGCGATTTTCATTTCGCATTGCCAGTCCCTCGTTGCGATTTTCATTTAGCATTGC
82207 G
66 G
* *
82208 AAATTAGCGTTGCGATTTTCATTTCGCATTGCCAGTCTCTCGTTGCGATTTTCATTTCGCATTGC
1 AAATTAGCGTTGCGATTTTCATTTCGCATTGCCAGTCCCTCGTTGCGATTTTCATTTAGCATTGC
82273 G
66 G
82274 A
1 A
82275 TAGTAATTTC
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
66 62 1.00
ACGTcount: A:0.17, C:0.23, G:0.20, T:0.41
Consensus pattern (66 bp):
AAATTAGCGTTGCGATTTTCATTTCGCATTGCCAGTCCCTCGTTGCGATTTTCATTTAGCATTGC
G
Found at i:84582 original size:12 final size:12
Alignment explanation
Indices: 84565--84589 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
84555 TCTTCGGGGA
84565 CTTTTTCTTCTT
1 CTTTTTCTTCTT
84577 CTTTTTCTTCTT
1 CTTTTTCTTCTT
84589 C
1 C
84590 AGGATTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (12 bp):
CTTTTTCTTCTT
Found at i:84797 original size:24 final size:24
Alignment explanation
Indices: 84763--84816 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
84753 ATGAAACATC
*
84763 ATCAAAATCCGAGTATTGACCAAT
1 ATCAAAATCCGAGTATTGACCAAG
* *
84787 ATCAAAGTCCGGGTATTGACCAAG
1 ATCAAAATCCGAGTATTGACCAAG
84811 ATCAAA
1 ATCAAA
84817 TTTCAAATAC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.41, C:0.20, G:0.17, T:0.22
Consensus pattern (24 bp):
ATCAAAATCCGAGTATTGACCAAG
Found at i:85881 original size:20 final size:20
Alignment explanation
Indices: 85804--85874 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
85794 ATTCATTTGA
*
85804 CTATCGCAACGTGAAAATGG
1 CTATCGCAACGCGAAAATGG
*
85824 CTATCGCAACGCGAAAACGG
1 CTATCGCAACGCGAAAATGG
85844 CTATCGCAACGCGAAAATGG
1 CTATCGCAACGCGAAAATGG
85864 CTATCGCAACG
1 CTATCGCAACG
85875 ACAAAATCGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.34, C:0.27, G:0.24, T:0.15
Consensus pattern (20 bp):
CTATCGCAACGCGAAAATGG
Found at i:85939 original size:19 final size:19
Alignment explanation
Indices: 85912--85964 Score: 79
Period size: 19 Copynumber: 2.8 Consensus size: 19
85902 GCATTGCGAT
* *
85912 TTTCTCATTGTGATTTTCA
1 TTTCGCATTGCGATTTTCA
85931 TTTCGCATTGCGATTTTCA
1 TTTCGCATTGCGATTTTCA
*
85950 TTTTGCATTGCGATT
1 TTTCGCATTGCGATT
85965 CTCTCGTTGC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.15, C:0.17, G:0.15, T:0.53
Consensus pattern (19 bp):
TTTCGCATTGCGATTTTCA
Found at i:86110 original size:14 final size:14
Alignment explanation
Indices: 86091--86127 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
86081 CATCAATTAA
86091 ACAAATCAACATTT
1 ACAAATCAACATTT
* *
86105 ACAAATCATCTTTT
1 ACAAATCAACATTT
86119 ACAAATCAA
1 ACAAATCAA
86128 TTAAACAATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACATTT
Found at i:86354 original size:14 final size:15
Alignment explanation
Indices: 86328--86356 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
86318 GTACTTAACC
86328 AAAACCAAAAGGAGT
1 AAAACCAAAAGGAGT
86343 AAAACC-AAAGGAGT
1 AAAACCAAAAGGAGT
86357 TATGTTAACA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.59, C:0.14, G:0.21, T:0.07
Consensus pattern (15 bp):
AAAACCAAAAGGAGT
Found at i:88086 original size:19 final size:19
Alignment explanation
Indices: 87975--88096 Score: 76
Period size: 20 Copynumber: 6.6 Consensus size: 19
87965 TAGTTTACTT
* *
87975 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAA-TGAAAA
* **
87995 TCGCAACACGAAAATGACTA
1 TCGCAACGCG-AAATGAAAA
***
88015 TCGCAACGCGGAAATGGCTA
1 TCGCAACGC-GAAATGAAAA
*
88035 TCGCAATGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
88054 TCGCAA--CG--A--CAAA
1 TCGCAACGCGAAATGAAAA
88067 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
88086 TCGCAATGCGA
1 TCGCAACGCGA
88097 TTTTCATTTC
Statistics
Matches: 82, Mismatches: 12, Indels: 17
0.74 0.11 0.15
Matches are distributed among these distances:
13 9 0.11
15 3 0.04
17 3 0.04
19 26 0.32
20 37 0.45
21 4 0.05
ACGTcount: A:0.43, C:0.24, G:0.20, T:0.14
Consensus pattern (19 bp):
TCGCAACGCGAAATGAAAA
Found at i:88127 original size:14 final size:14
Alignment explanation
Indices: 88108--88165 Score: 71
Period size: 14 Copynumber: 3.9 Consensus size: 14
88098 TTTCATTTCG
88108 CGTTGCGATTTTGT
1 CGTTGCGATTTTGT
*
88122 CGTTGCGATTTCATTT
1 CGTTGCGATTT--TGT
88138 CGCATTGCGATTTTGT
1 CG--TTGCGATTTTGT
88154 CGTTGCGATTTT
1 CGTTGCGATTTT
88166 CATTTCGCAT
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
14 21 0.55
16 8 0.21
18 9 0.24
ACGTcount: A:0.10, C:0.17, G:0.24, T:0.48
Consensus pattern (14 bp):
CGTTGCGATTTTGT
Found at i:88172 original size:33 final size:33
Alignment explanation
Indices: 88092--88181 Score: 164
Period size: 32 Copynumber: 2.8 Consensus size: 33
88082 AAAATCGCAA
*
88092 TGCGATTTTCATTTCGCGTTGCGATTTTGTCGT
1 TGCGATTTTCATTTCGCATTGCGATTTTGTCGT
88125 TGCGA-TTTCATTTCGCATTGCGATTTTGTCGT
1 TGCGATTTTCATTTCGCATTGCGATTTTGTCGT
88157 TGCGATTTTCATTTCGCATTGCGAT
1 TGCGATTTTCATTTCGCATTGCGAT
88182 AGCCATTTTC
Statistics
Matches: 55, Mismatches: 1, Indels: 2
0.95 0.02 0.03
Matches are distributed among these distances:
32 31 0.56
33 24 0.44
ACGTcount: A:0.12, C:0.19, G:0.22, T:0.47
Consensus pattern (33 bp):
TGCGATTTTCATTTCGCATTGCGATTTTGTCGT
Found at i:88210 original size:20 final size:20
Alignment explanation
Indices: 88168--88220 Score: 70
Period size: 20 Copynumber: 2.6 Consensus size: 20
88158 GCGATTTTCA
*
88168 TTTCGCATTGCGATAGCCAT
1 TTTCGCGTTGCGATAGCCAT
* *
88188 TTTCGCGTTGCGATAGTCTT
1 TTTCGCGTTGCGATAGCCAT
*
88208 TTTCGTGTTGCGA
1 TTTCGCGTTGCGA
88221 AAGTAAACTA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.13, C:0.21, G:0.25, T:0.42
Consensus pattern (20 bp):
TTTCGCGTTGCGATAGCCAT
Found at i:90089 original size:20 final size:20
Alignment explanation
Indices: 90064--90101 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
90054 AATAGTTTCT
90064 GAAAATGAAAATCGCAACAC
1 GAAAATGAAAATCGCAACAC
**
90084 GAAAATGACTATCGCAAC
1 GAAAATGAAAATCGCAAC
90102 GCAAATTTGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.50, C:0.21, G:0.16, T:0.13
Consensus pattern (20 bp):
GAAAATGAAAATCGCAACAC
Found at i:90410 original size:22 final size:22
Alignment explanation
Indices: 90383--90426 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
90373 GATGGAGATA
90383 GACGGATTTCGCCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
*
90405 GACGGATTTCGTCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
90427 TGAGAGAGTG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.18, C:0.16, G:0.45, T:0.20
Consensus pattern (22 bp):
GACGGATTTCGCCGGAGATGGG
Found at i:90700 original size:20 final size:20
Alignment explanation
Indices: 90594--90728 Score: 112
Period size: 20 Copynumber: 6.7 Consensus size: 20
90584 CGCTTTGAAA
*
90594 ATCGCATTGCGATTATGT-ATT
1 ATCGCATTGCGA-TA-GTCAGT
* * *
90615 ATCGCGTTGCGAAAGTCAGA
1 ATCGCATTGCGATAGTCAGT
* *
90635 ATCGCGTTGCGAAAGTCAGT
1 ATCGCATTGCGATAGTCAGT
* * * *
90655 ATCTCGTTGCGATTTTGT-ATT
1 ATCGCATTGCGA--TAGTCAGT
*
90676 ATCGCATTGCGATAGTAAGT
1 ATCGCATTGCGATAGTCAGT
*
90696 ATCGCATTGTGATAGTCAGT
1 ATCGCATTGCGATAGTCAGT
90716 ATCGCATTGCGAT
1 ATCGCATTGCGAT
90729 TTTCCCAATT
Statistics
Matches: 94, Mismatches: 16, Indels: 9
0.79 0.13 0.08
Matches are distributed among these distances:
19 5 0.05
20 64 0.68
21 23 0.24
22 2 0.02
ACGTcount: A:0.24, C:0.17, G:0.24, T:0.34
Consensus pattern (20 bp):
ATCGCATTGCGATAGTCAGT
Found at i:90700 original size:61 final size:61
Alignment explanation
Indices: 90594--90731 Score: 186
Period size: 61 Copynumber: 2.3 Consensus size: 61
90584 CGCTTTGAAA
* * * *
90594 ATCGCATTGCGATTATGTATTATCGCGTTGCGAAAGTCAGAATCGCGTTGCGAAAGTCAGT
1 ATCGCATTGCGATTTTGTATTATCGCATTGCGAAAGTAAGAATCGCATTGCGAAAGTCAGT
* * * * * *
90655 ATCTCGTTGCGATTTTGTATTATCGCATTGCGATAGTAAGTATCGCATTGTGATAGTCAGT
1 ATCGCATTGCGATTTTGTATTATCGCATTGCGAAAGTAAGAATCGCATTGCGAAAGTCAGT
90716 ATCGCATTGCGATTTT
1 ATCGCATTGCGATTTT
90732 CCCAATTCGC
Statistics
Matches: 65, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
61 65 1.00
ACGTcount: A:0.24, C:0.17, G:0.24, T:0.36
Consensus pattern (61 bp):
ATCGCATTGCGATTTTGTATTATCGCATTGCGAAAGTAAGAATCGCATTGCGAAAGTCAGT
Found at i:90747 original size:61 final size:61
Alignment explanation
Indices: 90594--90749 Score: 152
Period size: 61 Copynumber: 2.6 Consensus size: 61
90584 CGCTTTGAAA
* ** * * * *
90594 ATCGCATTGCGATTATGTATTATCGCGTTGCGAAAGTCAGAATCGCGTTGCGAAAGTCAGT
1 ATCGCATTGCGATTTTCCAATATCGCGTTGCGATAGTAAGAATCGCATTGCGAAAGTCAGT
* * ** * * * * *
90655 ATCTCGTTGCGATTTTGTATTATCGCATTGCGATAGTAAGTATCGCATTGTGATAGTCAGT
1 ATCGCATTGCGATTTTCCAATATCGCGTTGCGATAGTAAGAATCGCATTGCGAAAGTCAGT
90716 ATCGCATTGCGATTTTCCCAAT-TCGCGTTGCGAT
1 ATCGCATTGCGATTTT-CCAATATCGCGTTGCGAT
90750 TTACTTATTC
Statistics
Matches: 78, Mismatches: 16, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
61 76 0.97
62 2 0.03
ACGTcount: A:0.23, C:0.19, G:0.24, T:0.35
Consensus pattern (61 bp):
ATCGCATTGCGATTTTCCAATATCGCGTTGCGATAGTAAGAATCGCATTGCGAAAGTCAGT
Found at i:90839 original size:21 final size:21
Alignment explanation
Indices: 90799--90839 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
90789 ACTGTAGATC
**
90799 ATCGCAACGCGATTTCCAACT
1 ATCGCAACGCGAAATCCAACT
*
90820 ATCGCAACGCGAAATGCAAC
1 ATCGCAACGCGAAATCCAAC
90840 GCGAATTTGC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.34, C:0.32, G:0.17, T:0.17
Consensus pattern (21 bp):
ATCGCAACGCGAAATCCAACT
Found at i:91664 original size:8 final size:8
Alignment explanation
Indices: 91604--91665 Score: 54
Period size: 8 Copynumber: 7.9 Consensus size: 8
91594 AAATGGTTTT
*
91604 TATAATTA
1 TATATTTA
*
91612 TATA-TAA
1 TATATTTA
*
91619 TATATATA
1 TATATTTA
*
91627 TATATATA
1 TATATTTA
*
91635 TATATATA
1 TATATTTA
*
91643 TATATGTA
1 TATATTTA
*
91651 TTTATTTA
1 TATATTTA
91659 TATATTT
1 TATATTT
91666 TTTCCATATA
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
7 6 0.13
8 40 0.87
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.55
Consensus pattern (8 bp):
TATATTTA
Found at i:91676 original size:2 final size:2
Alignment explanation
Indices: 91610--91663 Score: 74
Period size: 2 Copynumber: 27.5 Consensus size: 2
91600 TTTTTATAAT
*
91610 TA TA TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* *
91651 TT TA TT TA TA TA T
1 TA TA TA TA TA TA T
91664 TTTTTCCATA
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
1 1 0.02
2 44 0.98
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (2 bp):
TA
Found at i:92538 original size:25 final size:23
Alignment explanation
Indices: 92513--92559 Score: 58
Period size: 23 Copynumber: 1.9 Consensus size: 23
92503 TAAGTAAAAG
92513 TAAAAATAAAATATTTTAAATTAAGT
1 TAAAAAT-AAATA--TTAAATTAAGT
*
92539 TAATAATAAATATTAAATTAA
1 TAAAAATAAATATTAAATTAA
92560 AATAAAGTTA
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
23 9 0.45
25 5 0.25
26 6 0.30
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (23 bp):
TAAAAATAAATATTAAATTAAGT
Found at i:92553 original size:18 final size:17
Alignment explanation
Indices: 92532--92565 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
92522 AATATTTTAA
*
92532 ATTAAGTTAATAATAAAT
1 ATTAAATTAA-AATAAAT
92550 ATTAAATTAAAATAAA
1 ATTAAATTAAAATAAA
92566 GTTAATCATC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (17 bp):
ATTAAATTAAAATAAAT
Found at i:95485 original size:24 final size:24
Alignment explanation
Indices: 95453--95499 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
95443 ATTTTAATTC
95453 AGAATATTAAAAAAGATAAGCATA
1 AGAATATTAAAAAAGATAAGCATA
95477 AGAATATTAAAAAAGATAAGCAT
1 AGAATATTAAAAAAGATAAGCAT
95500 CACTTTAGGA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.62, C:0.04, G:0.13, T:0.21
Consensus pattern (24 bp):
AGAATATTAAAAAAGATAAGCATA
Found at i:96094 original size:81 final size:82
Alignment explanation
Indices: 95922--96101 Score: 190
Period size: 81 Copynumber: 2.2 Consensus size: 82
95912 CAATTACTAT
* * * *
95922 TAATTGGGTTCATCTATAGTGCGTTTCTCCAACAAACGCTGCAACAGAGTAGTACTTTAGCGTCG
1 TAATAGGGTTCATCTATAGTGCATTTCTCCAACAAACGCTGCAACAGAGTAATACTTTAGCGGCG
* * *
95987 TTTTTATACAAACGCCA
66 TTTGTATAAAAACACCA
*
96004 CAATA-GGTTCATCTATAGTGGCATTTCT-CAACAAACGCCGTG-AA-A-AGTAATACTTTAGCG
1 TAATAGGGTTCATCTATAGT-GCATTTCTCCAACAAACG-C-TGCAACAGAGTAATACTTTAGCG
* ***
96064 GCGTTTGTATAAAAATATTG
63 GCGTTTGTATAAAAACACCA
96084 TAATAGGGTTCATCTATA
1 TAATAGGGTTCATCTATA
96102 ATAGTATTTT
Statistics
Matches: 81, Mismatches: 13, Indels: 9
0.79 0.13 0.09
Matches are distributed among these distances:
80 30 0.37
81 36 0.44
82 13 0.16
83 2 0.02
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.32
Consensus pattern (82 bp):
TAATAGGGTTCATCTATAGTGCATTTCTCCAACAAACGCTGCAACAGAGTAATACTTTAGCGGCG
TTTGTATAAAAACACCA
Found at i:99918 original size:86 final size:86
Alignment explanation
Indices: 99720--99925 Score: 238
Period size: 86 Copynumber: 2.4 Consensus size: 86
99710 AATGTAATTA
**
99720 GCGGCATTTGTATCCAAAAACGCCGCTATAGATA-TGACATTTTGCAGTGTTTGTATCCAAAAAC
1 GCGGCATTTGT-TCCAAAAACGCCGCTATAGATATTGACATTTTGCAGCATTTGTATCCAAAAAC
* *
99784 GCTACTATAGATCGGACTTTTT
65 ACTACTATAGATCGGACCTTTT
* * * * ** *
99806 GCGGCGTTTGTTCTAAAAACGTCGCTATAGATATTGACCTTTTGTGGCATTTGT-TCCAAAAATA
1 GCGGCATTTGTTCCAAAAACGCCGCTATAGATATTGACATTTTGCAGCATTTGTATCCAAAAACA
**
99870 CTGTTATAGATATC-GACCTTTT
66 CTACTATAG--ATCGGACCTTTT
*
99892 GCGGCATTTATTCCAAAAACGCCGCTATAGATAT
1 GCGGCATTTGTTCCAAAAACGCCGCTATAGATAT
99926 CAACCTATCG
Statistics
Matches: 100, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
85 35 0.35
86 62 0.62
87 3 0.03
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.34
Consensus pattern (86 bp):
GCGGCATTTGTTCCAAAAACGCCGCTATAGATATTGACATTTTGCAGCATTTGTATCCAAAAACA
CTACTATAGATCGGACCTTTT
Found at i:99926 original size:43 final size:43
Alignment explanation
Indices: 99720--99931 Score: 214
Period size: 43 Copynumber: 4.9 Consensus size: 43
99710 AATGTAATTA
*
99720 GCGGCATTTGTATCCAAAAACGCCGCTATAGATAT-GACATTTT
1 GCGGCATTTGT-TCCAAAAACGCCGCTATAGATATCGACCTTTT
* ** ** *
99763 GCAGTGTTTGTATCCAAAAACGCTACTATAG--ATCGGACTTTTT
1 GCGGCATTTGT-TCCAAAAACGCCGCTATAGATATC-GACCTTTT
* * * *
99806 GCGGCGTTTGTTCTAAAAACGTCGCTATAGATATTGACCTTTT
1 GCGGCATTTGTTCCAAAAACGCCGCTATAGATATCGACCTTTT
* ** * *
99849 GTGGCATTTGTTCCAAAAATACTGTTATAGATATCGACCTTTT
1 GCGGCATTTGTTCCAAAAACGCCGCTATAGATATCGACCTTTT
* *
99892 GCGGCATTTATTCCAAAAACGCCGCTATAGATATCAACCT
1 GCGGCATTTGTTCCAAAAACGCCGCTATAGATATCGACCT
99932 ATCGCTGCAT
Statistics
Matches: 135, Mismatches: 30, Indels: 8
0.78 0.17 0.05
Matches are distributed among these distances:
41 2 0.01
42 15 0.11
43 116 0.86
44 2 0.01
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.33
Consensus pattern (43 bp):
GCGGCATTTGTTCCAAAAACGCCGCTATAGATATCGACCTTTT
Found at i:102505 original size:37 final size:37
Alignment explanation
Indices: 102463--102534 Score: 126
Period size: 37 Copynumber: 1.9 Consensus size: 37
102453 TGGTACTATA
*
102463 ATGTTGTCACACAATTGTTTAATTGATATTTTAGATG
1 ATGTTGTCACACAATTGTTTAATTGATAGTTTAGATG
*
102500 ATGTTGTCACATAATTGTTTAATTGATAGTTTAGA
1 ATGTTGTCACACAATTGTTTAATTGATAGTTTAGA
102535 AAATTTGAGA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.31, C:0.07, G:0.17, T:0.46
Consensus pattern (37 bp):
ATGTTGTCACACAATTGTTTAATTGATAGTTTAGATG
Found at i:103030 original size:21 final size:21
Alignment explanation
Indices: 102996--103035 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
102986 ATGAACCTAC
*
102996 ATAATAAATATATATATATAT
1 ATAATAAATATATAAATATAT
* *
103017 ATAATTAATTTATAAATAT
1 ATAATAAATATATAAATAT
103036 TAACTGAATA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (21 bp):
ATAATAAATATATAAATATAT
Found at i:109841 original size:2 final size:2
Alignment explanation
Indices: 109834--109860 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
109824 TTTATCCTTT
109834 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
109861 CCATTGTTGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:110872 original size:28 final size:28
Alignment explanation
Indices: 110810--110873 Score: 92
Period size: 28 Copynumber: 2.3 Consensus size: 28
110800 CGCAAGAAAC
110810 CAACCTGAAACACATTACCTCCCCAAAT
1 CAACCTGAAACACATTACCTCCCCAAAT
* * *
110838 TAACCTGAAACACATTACCTTCCCAAGT
1 CAACCTGAAACACATTACCTCCCCAAAT
*
110866 CAGCCTGA
1 CAACCTGA
110874 TCATTTTATC
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.36, C:0.36, G:0.08, T:0.20
Consensus pattern (28 bp):
CAACCTGAAACACATTACCTCCCCAAAT
Found at i:112224 original size:54 final size:54
Alignment explanation
Indices: 112122--112225 Score: 147
Period size: 55 Copynumber: 1.9 Consensus size: 54
112112 AAACAATATG
* * *
112122 ATGTTTTCAAATAAATTTTAAAAGGAGCTAAGCCTGATTTTCAGGGGTTTCTTA
1 ATGTTTTCAAATAAATTTTAAAAGAAGCTAAGCCTAATTTTCAAGGGTTTCTTA
* *
112176 ATGTTTTTAAATAAATTTTTGAAAGAAGCTAAGCCTAATTTT-AAGGGTTT
1 ATGTTTTCAAATAAA-TTTTAAAAGAAGCTAAGCCTAATTTTCAAGGGTTT
112226 GAAGAAGCAA
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
54 21 0.48
55 23 0.52
ACGTcount: A:0.34, C:0.09, G:0.17, T:0.40
Consensus pattern (54 bp):
ATGTTTTCAAATAAATTTTAAAAGAAGCTAAGCCTAATTTTCAAGGGTTTCTTA
Found at i:113430 original size:91 final size:91
Alignment explanation
Indices: 113098--113618 Score: 656
Period size: 91 Copynumber: 5.7 Consensus size: 91
113088 ATTAACATGA
* * * *
113098 AGAGTTCATAATGTGAAGAACTCATCCAACAAGGGAGAAGAAGTTTATAATGAGAAGAACTTGCT
1 AGAGTTCATAATGAGAAGAACTCATCCAACGAGGGAGAAGAAGTTCATAATGAGAAGAACTTGTT
** *
113163 CAATATTGGCCCAATATTTCCAGTAG
66 CAACCTTGGCTCAATATTTCCAGTAG
* *
113189 AGAGTTCATAATGAGAAGAACCCATCCAACGAAGGA-AAGAAGTTCATAATGAGAAGAACTTGTT
1 AGAGTTCATAATGAGAAGAACTCATCCAACGAGGGAGAAGAAGTTCATAATGAGAAGAACTTGTT
* * * *
113253 CAACCTTGGCCCAACATTTCTAGTGG
66 CAACCTTGGCTCAATATTTCCAGTAG
* * * * *
113279 AGAGTTCAT-ATGAGAAAAACTCATCCAATGAAGAAGAATAAGTTCATAATGAGAAGAACTTGTT
1 AGAGTTCATAATGAGAAGAACTCATCCAACGAGGGAGAAGAAGTTCATAATGAGAAGAACTTGTT
* * * *
113343 CAATCTT-GCATCAATATTTCTAATTG
66 CAACCTTGGC-TCAATATTTCCAGTAG
* * * *
113369 AGGGTTGATAATGAGAAGAACTCATTCAACGAGGGAGAAGAAGTTCATAACGAGAAGAACTTGTT
1 AGAGTTCATAATGAGAAGAACTCATCCAACGAGGGAGAAGAAGTTCATAATGAGAAGAACTTGTT
**
113434 CAACCTTGGCTCAGCATTTCCAGT-G
66 CAACCTTGGCTCAATATTTCCAGTAG
* * *
113459 AAGAGTTCATAATGAGAAGAACTCATCCAACGAGGGAGAATAAGTTTATAATGAGTAGAACTTGT
1 -AGAGTTCATAATGAGAAGAACTCATCCAACGAGGGAGAAGAAGTTCATAATGAGAAGAACTTGT
*
113524 TCAACCTT-GCATCAATATTTCCAGCAG
65 TCAACCTTGGC-TCAATATTTCCAGTAG
* ** *
113551 GGAGTTCATAATGAGAAGAACTCATCTGACAAGGGAGAAGAAGTTCATAATGAGAAGAACTTGTT
1 AGAGTTCATAATGAGAAGAACTCATCCAACGAGGGAGAAGAAGTTCATAATGAGAAGAACTTGTT
113616 CAA
66 CAA
113619 ATTTGGTGAT
Statistics
Matches: 371, Mismatches: 52, Indels: 14
0.85 0.12 0.03
Matches are distributed among these distances:
89 24 0.06
90 111 0.30
91 233 0.63
92 3 0.01
ACGTcount: A:0.38, C:0.16, G:0.21, T:0.25
Consensus pattern (91 bp):
AGAGTTCATAATGAGAAGAACTCATCCAACGAGGGAGAAGAAGTTCATAATGAGAAGAACTTGTT
CAACCTTGGCTCAATATTTCCAGTAG
Found at i:113525 original size:182 final size:182
Alignment explanation
Indices: 113095--113618 Score: 725
Period size: 182 Copynumber: 2.9 Consensus size: 182
113085 GGGATTAACA
* * *
113095 TGAAGAGTTCATAATGTGAAGAACTCATCCAACAAGGGAGAAGAAGTTTATAATGAGAAGAACTT
1 TGAAGAGTTCATAATGAGAAGAACTCATCCAACGAGGGAGAATAAGTTTATAATGAGAAGAACTT
* * * * * * *
113160 GCTCAATATTGGC-CCAATATTTCCAGTAGAGAGTTCATAATGAGAAGAACCCATCCAACGAAGG
66 GTTCAATCTT-GCATCAATATTTCCAGTAGAGGGTTCATAATGAGAAGAACTCATTCAACGAGGG
*
113224 A-AAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTGGCCCAACATTTCTAG
130 AGAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTGGCCCAACATTTCCAG
* * * * * *
113276 TGGAGAGTTCAT-ATGAGAAAAACTCATCCAATGAAGAAGAATAAGTTCATAATGAGAAGAACTT
1 TGAAGAGTTCATAATGAGAAGAACTCATCCAACGAGGGAGAATAAGTTTATAATGAGAAGAACTT
* * * *
113340 GTTCAATCTTGCATCAATATTTCTAATTGAGGGTTGATAATGAGAAGAACTCATTCAACGAGGGA
66 GTTCAATCTTGCATCAATATTTCCAGTAGAGGGTTCATAATGAGAAGAACTCATTCAACGAGGGA
* * *
113405 GAAGAAGTTCATAACGAGAAGAACTTGTTCAACCTTGGCTCAGCATTTCCAG
131 GAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTGGCCCAACATTTCCAG
*
113457 TGAAGAGTTCATAATGAGAAGAACTCATCCAACGAGGGAGAATAAGTTTATAATGAGTAGAACTT
1 TGAAGAGTTCATAATGAGAAGAACTCATCCAACGAGGGAGAATAAGTTTATAATGAGAAGAACTT
* * * *
113522 GTTCAACCTTGCATCAATATTTCCAGCAG-GGAGTTCATAATGAGAAGAACTCA-TCTGACAAGG
66 GTTCAATCTTGCATCAATATTTCCAGTAGAGG-GTTCATAATGAGAAGAACTCATTC-AACGAGG
113585 GAGAAGAAGTTCATAATGAGAAGAACTTGTTCAA
129 GAGAAGAAGTTCATAATGAGAAGAACTTGTTCAA
113619 ATTTGGTGAT
Statistics
Matches: 298, Mismatches: 40, Indels: 9
0.86 0.12 0.03
Matches are distributed among these distances:
179 2 0.01
180 95 0.32
181 73 0.24
182 128 0.43
ACGTcount: A:0.38, C:0.15, G:0.21, T:0.25
Consensus pattern (182 bp):
TGAAGAGTTCATAATGAGAAGAACTCATCCAACGAGGGAGAATAAGTTTATAATGAGAAGAACTT
GTTCAATCTTGCATCAATATTTCCAGTAGAGGGTTCATAATGAGAAGAACTCATTCAACGAGGGA
GAAGAAGTTCATAATGAGAAGAACTTGTTCAACCTTGGCCCAACATTTCCAG
Done.