Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005289.1 Hibiscus syriacus cultivar Beakdansim tig00011965_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61216

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4742--4789
24
1.9
26
83
8
64
52
2
20
25
1.58
10332--10403
31
2.3
31
87
0
108
50
4
0
45
1.21
11256--11289
11
3.2
11
83
8
52
29
20
0
50
1.49
12087--12126
21
1.9
21
84
0
53
37
5
17
40
1.72
12364--12394
16
1.9
16
100
0
62
19
16
19
45
1.86
16509--16569
21
2.8
22
87
5
97
63
11
11
13
1.51
23465--23505
16
2.6
16
88
3
57
36
12
21
29
1.90
27327--27402
36
2.1
37
90
7
120
40
14
13
31
1.84
27327--27419
36
2.5
36
83
10
109
40
15
10
33
1.81
27877--27960
11
7.3
11
74
19
64
35
3
1
59
1.22
27909--27951
15
2.7
15
78
7
50
37
2
0
60
1.10
27853--27954
23
4.1
25
70
21
63
37
1
0
59
1.15
28130--28163
16
2.1
16
88
0
50
32
5
0
61
1.20
28144--28194
21
2.4
22
83
3
68
29
3
1
64
1.22
31470--31523
24
2.3
25
75
12
60
74
7
18
0
1.05
33039--33148
37
3.0
37
89
2
159
27
23
11
37
1.90
33074--33448
102
3.7
102
91
0
626
29
20
13
37
1.90
33362--33448
36
2.4
36
86
0
111
26
21
12
39
1.89
33390--33548
67
2.4
66
85
6
212
32
22
11
34
1.89
34413--34558
43
3.4
43
75
11
165
36
23
20
19
1.95
34129--34498
109
3.4
107
85
4
446
33
25
18
21
1.97
34410--34565
84
1.9
84
93
0
267
35
23
21
19
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35084--35159
36
2.1
37
90
7
120
40
14
13
31
1.84
35084--35176
36
2.5
36
84
6
116
39
15
11
33
1.83
35881--35937
21
2.7
21
83
2
69
29
5
1
63
1.27
43929--44017
36
2.7
33
75
11
92
26
8
26
37
1.86
45623--45668
20
2.3
20
100
0
92
32
4
13
50
1.61
48688--48725
19
2.0
19
94
0
67
60
15
18
5
1.53
54923--55002
26
3.1
26
96
0
142
38
40
8
12
1.74
56541--56626
35
2.4
36
77
16
97
51
4
0
44
1.22
61082--61144
30
2.1
32
85
11
89
41
0
3
55
1.16

Tables:   1

The End!