Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000529.1 Hibiscus syriacus cultivar Beakdansim tig00001013_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48709

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3784--4104
178
1.8
177
84
2
437
36
15
13
33
1.87
7671--7695
10
2.5
10
100
0
50
24
0
8
68
1.16
12012--12055
21
2.1
21
91
0
70
38
15
11
34
1.84
18995--19026
16
2.0
16
100
0
64
31
0
12
56
1.37
19540--19617
29
2.7
29
95
0
138
29
25
10
34
1.89
20040--20086
16
3.1
15
82
8
60
27
2
2
68
1.13
20057--20128
37
1.9
37
83
5
92
41
4
1
52
1.29
21281--21367
35
2.5
34
80
12
97
55
10
8
26
1.61
21955--21994
18
2.2
18
95
0
71
22
17
32
27
1.96
23648--23688
18
2.3
18
87
4
57
60
2
7
29
1.36
23873--23985
51
2.2
51
82
3
129
21
28
35
15
1.93
25929--25963
2
17.5
2
100
0
70
51
0
0
48
1.00
29275--29335
23
2.7
23
85
10
88
27
24
27
19
1.99
32562--32601
18
2.2
18
86
8
55
45
5
17
32
1.70
33659--33692
17
2.0
17
88
0
50
58
0
29
11
1.33
35108--35203
31
3.1
31
87
3
131
23
16
22
36
1.94
35914--35951
2
19.0
2
100
0
76
50
0
0
50
1.00
36082--36140
25
2.4
25
94
0
100
40
6
15
37
1.74
36201--36246
16
2.9
16
76
20
51
60
0
0
39
0.97
37268--37308
22
1.9
21
90
5
64
70
4
0
24
1.06
41637--41723
44
2.0
44
95
0
156
58
12
5
22
1.55
42002--42054
25
2.1
25
89
0
79
30
28
15
26
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44792--44830
20
1.9
20
84
5
51
64
2
0
33
1.08
44889--44988
29
3.4
29
90
0
146
21
28
29
22
1.99
45052--45267
114
1.9
114
92
1
362
33
21
17
27
1.95
45579--45641
15
4.5
15
73
15
71
61
0
36
1
1.05
45580--45671
26
3.5
26
83
1
121
58
0
38
3
1.14
45584--45669
41
2.1
41
82
8
104
60
0
36
3
1.14
45718--45782
28
2.3
29
92
5
107
30
0
13
55
1.39
45732--45796
28
2.3
29
84
7
82
38
0
10
50
1.37

Tables:   1

The End!