genome.fa.s5290.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005290.1 Hibiscus syriacus cultivar Beakdansim tig00011966_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60019

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1314--1369	21	2.7	21	83	5	60	21	17	33	26	1.96
1639--1707	20	3.5	20	91	0	111	34	26	21	17	1.95
1699--1773	33	2.2	34	83	2	89	46	17	18	17	1.84
1779--1817	19	2.0	20	85	5	53	15	10	17	56	1.66
1823--1870	20	2.4	20	96	0	87	14	20	27	37	1.92
2402--2471	21	3.3	21	72	5	70	24	37	18	20	1.94
2388--2471	42	2.0	42	86	4	116	22	40	16	20	1.91
3675--3720	19	2.4	19	88	3	65	23	17	28	30	1.97
3686--3722	19	1.9	19	100	0	74	24	16	27	32	1.96
5896--5935	20	2.0	20	90	0	62	32	30	10	27	1.89
7042--7086	16	2.8	16	78	21	58	53	0	15	31	1.43
16615--16771	20	7.8	20	73	6	93	38	24	17	19	1.92
16674--16771	41	2.4	41	77	6	110	37	22	18	21	1.94
16614--16790	61	2.9	61	76	6	182	39	24	16	18	1.91
16738--16951	20	10.6	20	81	5	234	35	24	20	20	1.96
17334--17401	33	2.1	33	94	0	118	10	23	17	48	1.78
17482--17559	41	1.9	41	97	0	147	44	16	25	12	1.83
17483--17558	21	3.7	21	83	3	109	46	17	25	11	1.82
17543--17599	14	3.7	14	75	20	60	43	21	24	10	1.83
17538--17602	33	2.0	33	96	0	121	44	20	24	10	1.83
17541--17615	33	2.3	33	90	0	114	46	22	21	9	1.79
17611--17675	19	3.7	19	74	19	77	10	23	21	44	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17633--17689	14	3.7	14	75	20	60	8	24	22	43	1.81
17616--17697	33	2.5	33	100	0	164	9	23	19	47	1.79
19393--19675	93	3.1	93	98	0	550	22	12	19	45	1.83
19723--19851	19	7.3	19	73	17	116	46	27	16	9	1.77
19760--19851	33	2.8	34	90	6	136	46	27	17	8	1.77
19723--19851	52	2.5	51	73	14	136	46	27	16	9	1.77
19847--19965	19	6.8	18	74	19	110	8	19	25	47	1.77
19869--19925	14	3.7	14	72	20	51	7	19	28	45	1.76
19852--19944	33	2.8	33	91	0	159	8	19	24	47	1.77
19847--19981	19	7.6	19	73	20	105	9	18	25	45	1.80
21905--21940	14	2.6	14	95	0	63	33	0	22	44	1.53
22047--22144	19	5.4	19	84	13	143	45	17	22	14	1.84
22047--22162	53	2.2	53	98	1	225	43	18	24	13	1.86
22191--22425	19	13.4	19	78	17	269	13	21	18	46	1.83
22169--22425	52	4.9	52	87	7	362	13	22	18	45	1.84
22169--22425	71	3.8	71	85	9	299	13	22	18	45	1.84
24707--24731	12	2.1	12	100	0	50	0	28	0	72	0.86
24906--24952	24	2.0	24	87	8	69	38	21	14	25	1.92
25634--25843	20	10.5	20	84	2	206	19	18	24	37	1.94
27887--27941	20	2.8	20	85	0	74	32	18	21	27	1.96
34714--34768	20	2.8	20	85	0	74	32	18	21	27	1.96
35303--35361	22	2.7	22	91	0	91	27	23	22	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42363--42390	14	2.0	14	100	0	56	71	14	7	7	1.29
49477--49517	21	2.0	21	95	0	73	29	17	19	34	1.94
50239--50304	23	2.9	23	86	0	87	31	21	27	19	1.97
50359--50407	21	2.3	21	80	13	64	38	22	10	28	1.87
51067--51120	21	2.6	21	100	0	108	24	29	14	31	1.95
53324--53360	16	2.3	17	81	13	51	27	0	8	64	1.21

Tables:   1

The End!