genome.fa.s5291.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005291.1 Hibiscus syriacus cultivar Beakdansim tig00011967_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  110690

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4973--5016	23	1.9	23	95	0	79	54	0	0	45	0.99
6403--6477	22	3.2	24	75	22	63	26	1	4	68	1.16
6593--6954	133	2.7	134	91	5	565	37	8	7	46	1.64
8850--8884	17	2.1	16	89	5	52	62	0	2	34	1.10
11259--11330	31	2.3	31	85	0	90	27	15	11	45	1.80
11271--11337	31	2.2	31	88	0	98	22	19	13	44	1.85
13773--13800	2	14.0	2	100	0	56	50	0	0	50	1.00
14760--14803	21	2.1	21	82	0	52	54	2	4	38	1.33
15503--15597	20	4.8	19	77	13	75	30	13	7	48	1.70
17557--17761	91	2.3	91	89	3	308	40	13	9	36	1.78
17676--17824	80	1.9	77	84	4	199	35	16	8	38	1.80
17816--17949	68	2.0	66	87	7	191	41	15	6	36	1.74
17756--18095	159	2.2	151	85	6	452	38	16	7	37	1.76
17816--18107	159	1.8	160	91	1	487	40	14	6	38	1.73
17949--18107	65	2.4	66	83	5	178	39	13	6	40	1.71
19403--19539	73	1.9	74	89	4	215	27	34	18	20	1.96
26942--26996	22	2.5	22	78	0	65	30	9	21	38	1.85
32232--32265	5	6.8	5	86	0	50	5	38	38	17	1.74
32564--32613	22	2.3	22	78	0	55	30	10	24	36	1.88
40109--40147	20	2.1	19	90	9	62	35	2	0	61	1.10
41650--41693	16	2.8	16	85	0	61	18	4	31	45	1.69
41650--41687	8	4.8	8	90	0	58	15	2	34	47	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44449--44476	2	14.0	2	100	0	56	50	0	0	50	1.00
46971--47316	43	8.1	43	85	0	424	21	16	18	42	1.89
47023--47326	128	2.4	129	84	2	398	22	16	17	43	1.87
46983--47315	171	1.9	171	86	0	468	22	16	18	42	1.88
50943--51005	26	2.4	27	94	2	110	57	3	25	14	1.52
51044--51265	41	5.5	40	77	6	189	40	13	16	29	1.87
51069--51252	81	2.3	82	85	3	257	41	14	16	27	1.87
51273--51370	41	2.4	41	80	0	106	41	13	14	30	1.84
51295--51405	41	2.7	41	85	2	134	39	16	14	29	1.88
59419--59487	2	34.5	2	100	0	138	49	0	0	50	1.00
62209--62235	5	5.4	5	100	0	54	55	0	0	44	0.99
65735--65776	19	2.2	19	86	0	57	19	21	4	54	1.62
68597--68764	45	3.7	45	94	3	284	23	23	7	45	1.79
68608--68725	23	5.2	22	66	19	73	25	22	6	45	1.76
68947--69314	54	6.8	54	84	3	337	26	20	19	33	1.97
68947--69300	55	6.5	55	82	4	276	25	20	20	33	1.97
68947--69314	110	3.4	109	82	2	321	26	20	19	33	1.97
69127--69339	108	2.0	109	83	4	270	26	20	20	32	1.97
69654--69690	19	1.9	19	94	0	65	35	8	16	40	1.78
72750--72854	30	3.5	30	93	2	167	43	4	16	35	1.69
72750--72855	15	7.1	15	73	4	97	43	5	16	34	1.71
73070--73109	20	2.0	20	85	9	55	40	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73183--73257	35	2.1	34	81	13	82	45	0	4	50	1.20
73205--73249	23	2.0	23	90	0	72	44	0	2	53	1.13
73206--73274	23	3.0	23	82	6	68	46	0	1	52	1.09
73193--73278	33	2.6	34	71	23	83	43	0	2	54	1.13
73183--73285	23	4.5	22	70	21	61	45	0	2	51	1.16
73262--73329	28	2.3	30	80	10	86	51	2	0	45	1.16
73343--73395	23	2.3	23	87	6	72	43	1	1	52	1.23
73340--73428	8	11.1	8	70	17	51	48	1	1	49	1.16
73385--73431	22	2.1	23	88	4	69	53	0	0	46	1.00
73388--73439	22	2.3	22	83	6	59	53	0	0	46	1.00
75764--76170	115	3.5	115	89	0	600	30	14	24	30	1.95
76302--77468	151	7.7	151	90	2	1801	35	14	13	36	1.86
76311--77468	603	1.9	603	92	1	1955	35	14	13	36	1.86
78644--78874	115	2.0	115	89	1	356	26	25	16	32	1.96
90652--90676	12	2.1	12	100	0	50	32	8	0	60	1.26
92128--92190	26	2.4	26	79	10	74	34	14	4	46	1.66
92145--92193	25	1.9	26	91	4	82	32	14	6	46	1.69
92545--92576	2	16.5	2	93	6	57	50	0	0	50	1.00
95140--95202	28	2.2	28	100	0	126	39	3	19	38	1.67
95133--95212	28	2.5	33	73	23	89	42	2	17	37	1.63
98155--98184	13	2.3	13	100	0	60	36	26	10	26	1.88
102420--102534	39	3.0	39	81	13	139	39	14	0	46	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105581--105622	21	1.9	22	85	9	59	28	19	21	30	1.97

Tables:   1

The End!