Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01005292.1 Hibiscus syriacus cultivar Beakdansim tig00011969_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 73961
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.32
Found at i:4661 original size:20 final size:20
Alignment explanation
Indices: 4629--4667 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
4619 TTAGGATTCA
*
4629 ATTACTTTCATATTTTTAGG
1 ATTACTTTCATATATTTAGG
4649 ATTATCTTT-ATATATTTAG
1 ATTA-CTTTCATATATTTAG
4668 TTTTAAATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.28, C:0.08, G:0.08, T:0.56
Consensus pattern (20 bp):
ATTACTTTCATATATTTAGG
Found at i:5960 original size:13 final size:13
Alignment explanation
Indices: 5942--5967 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
5932 ATTGCACTCG
5942 ATAGCATGAGCAT
1 ATAGCATGAGCAT
5955 ATAGCATGAGCAT
1 ATAGCATGAGCAT
5968 TCATTGAACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.15, G:0.23, T:0.23
Consensus pattern (13 bp):
ATAGCATGAGCAT
Found at i:19846 original size:2 final size:2
Alignment explanation
Indices: 19839--19873 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
19829 TAGCTTAAGC
19839 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
19874 CAATTGGCTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:20410 original size:45 final size:47
Alignment explanation
Indices: 20354--20506 Score: 194
Period size: 45 Copynumber: 3.4 Consensus size: 47
20344 TGCACCAATC
**
20354 CATGCATCGATGCAC-CATGGAATAAATTG-AACATCGAATGCATTT
1 CATGCATCGATGCACTCATGGAATATTTTGAAACATCGAATGCATTT
*
20399 CATGCATCGATGCACTCA--GAGT-TTTATGAAAACATCGAATGCATTT
1 CATGCATCGATGCACTCATGGAATATTT-TG-AAACATCGAATGCATTT
* *
20445 GATGCATCGATGCACTC-TGG-CTATTTTGAAACATCGAATGCATTT
1 CATGCATCGATGCACTCATGGAATATTTTGAAACATCGAATGCATTT
20490 CATGCATCGATGCACTC
1 CATGCATCGATGCACTC
20507 TTAGTGCACC
Statistics
Matches: 95, Mismatches: 6, Indels: 14
0.83 0.05 0.12
Matches are distributed among these distances:
43 1 0.01
44 5 0.05
45 48 0.51
46 37 0.39
47 4 0.04
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (47 bp):
CATGCATCGATGCACTCATGGAATATTTTGAAACATCGAATGCATTT
Found at i:20507 original size:45 final size:46
Alignment explanation
Indices: 20383--20507 Score: 193
Period size: 46 Copynumber: 2.7 Consensus size: 46
20373 GAATAAATTG
*
20383 AACATCGAATGCATTTCATGCATCGATGCACTCAGAGTTTTATGAA
1 AACATCGAATGCATTTCATGCATCGATGCACTCTGAGTTTTATGAA
*
20429 AACATCGAATGCATTTGATGCATCGATGCACTCTG-GCTATTT-TG-A
1 AACATCGAATGCATTTCATGCATCGATGCACTCTGAG-T-TTTATGAA
20474 AACATCGAATGCATTTCATGCATCGATGCACTCT
1 AACATCGAATGCATTTCATGCATCGATGCACTCT
20508 TAGTGCACCG
Statistics
Matches: 74, Mismatches: 3, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
45 35 0.47
46 36 0.49
47 3 0.04
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.31
Consensus pattern (46 bp):
AACATCGAATGCATTTCATGCATCGATGCACTCTGAGTTTTATGAA
Found at i:21963 original size:18 final size:20
Alignment explanation
Indices: 21927--21963 Score: 51
Period size: 18 Copynumber: 1.9 Consensus size: 20
21917 TTTCTTTAAA
*
21927 TTAATATAAGTATTTTCATT
1 TTAATATAAGTATTGTCATT
21947 TTAATAT-A-TATTGTCAT
1 TTAATATAAGTATTGTCAT
21964 ATTATGGTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
18 8 0.50
19 1 0.06
20 7 0.44
ACGTcount: A:0.35, C:0.05, G:0.05, T:0.54
Consensus pattern (20 bp):
TTAATATAAGTATTGTCATT
Found at i:22307 original size:192 final size:194
Alignment explanation
Indices: 22020--22382 Score: 505
Period size: 192 Copynumber: 1.9 Consensus size: 194
22010 ATAAGGTAAT
* * * *
22020 GTTATGCATAATTATCATTCAAAATACTATTACATAATATTATATCATGTCACTAAAAATTTGAC
1 GTTATGCATAAGTATCATTCAAAATACTATTACATAACATTATATCACGTCACTAAAAATGTGAC
* *
22085 AATATCTCTTTCGTAACATATAGGTTGATTTTATTGTAGTATTCATGACGATATAAATTATTAAT
66 AATATCTCTTTCGTAACATATAGATTGATTTTAATGTAGTATTCATGACGATATAAATTATTAAT
*
22150 -A-AAAATATTATATAATTTAGTGATGTAACAAATTGTCATGCAATATAAGTTATAAAAATGAC
131 AACAAAATATTATATAATTTAATGATGTAACAAATTGTCATGCAATATAAGTTATAAAAATGAC
* * * ** * *
22212 GTTATGCATAAGTGTCATTCATAATGCTATTAGGTAACATTATATTACGTCACTGAAAATGTGAC
1 GTTATGCATAAGTATCATTCAAAATACTATTACATAACATTATATCACGTCACTAAAAATGTGAC
* * * * * *
22277 AATATCTTTTTCGTCACATATAGATTGATTTTAATGTATTATTCGTGACGATGTGAATTATTAAT
66 AATATCTCTTTCGTAACATATAGATTGATTTTAATGTAGTATTCATGACGATATAAATTATTAAT
* * *
22342 AACAAAATTTTATATAATTTAATGATGTAACTAGTTGTCAT
131 AACAAAATATTATATAATTTAATGATGTAACAAATTGTCAT
22383 TGAGTATCAA
Statistics
Matches: 146, Mismatches: 23, Indels: 2
0.85 0.13 0.01
Matches are distributed among these distances:
192 111 0.76
193 1 0.01
194 34 0.23
ACGTcount: A:0.38, C:0.10, G:0.12, T:0.40
Consensus pattern (194 bp):
GTTATGCATAAGTATCATTCAAAATACTATTACATAACATTATATCACGTCACTAAAAATGTGAC
AATATCTCTTTCGTAACATATAGATTGATTTTAATGTAGTATTCATGACGATATAAATTATTAAT
AACAAAATATTATATAATTTAATGATGTAACAAATTGTCATGCAATATAAGTTATAAAAATGAC
Found at i:22488 original size:194 final size:193
Alignment explanation
Indices: 22020--22439 Score: 472
Period size: 192 Copynumber: 2.2 Consensus size: 193
22010 ATAAGGTAAT
** * * * ** * * * * *
22020 GTTATGCATAATTATCATTCAAAATACTATTACATAATATTATATCATGTCACTAAAAATTTGAC
1 GTTATGCATAAACATCATTCATAATGCTAATAGGTAACATTATATTACGTCACTGAAAATGTGAC
* * *
22085 AATATC-TCTTTCGTAACATATAGGTTGATTTTATTGTAGTATTCATGACGATATAAATTATTAA
66 AATATCTTCTTTCGTCACATATAGATTGATTTTAATGTAGTATTCATGACGATATAAATTATTAA
*
22149 TAAAAATATTATATAATTTAGTGATGTAACAAATTGTCATGCAATATAAGTTATAAAAATGAC
131 TAAAAATATTATATAATTTAATGATGTAACAAATTGTCATGCAATATAAGTTATAAAAATGAC
*** *
22212 GTTATGCATAAGTGTCATTCATAATGCTATTAGGTAACATTATATTACGTCACTGAAAATGTGAC
1 GTTATGCATAAACATCATTCATAATGCTAATAGGTAACATTATATTACGTCACTGAAAATGTGAC
* * * *
22277 AATATCTT-TTTCGTCACATATAGATTGATTTTAATGTATTATTCGTGACGATGTGAATTATTAA
66 AATATCTTCTTTCGTCACATATAGATTGATTTTAATGTAGTATTCATGACGATATAAATTATTAA
* * * * *
22341 TAACAAAATTTTATATAATTTAATGATGTAACTAGTTGTCATTG-AGTATCAA-TTAT-AAAGTG
131 T-A-AAAATATTATATAATTTAATGATGTAACAAATTGTCA-TGCAATAT-AAGTTATAAAAATG
22403 AC
192 AC
* * * *
22405 TTTATGTATAAACATCATTTATACTGCTAATAGGT
1 GTTATGCATAAACATCATTCATAATGCTAATAGGT
22440 GACCATGTAT
Statistics
Matches: 191, Mismatches: 32, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
192 110 0.58
193 36 0.19
194 41 0.21
195 4 0.02
ACGTcount: A:0.38, C:0.10, G:0.12, T:0.40
Consensus pattern (193 bp):
GTTATGCATAAACATCATTCATAATGCTAATAGGTAACATTATATTACGTCACTGAAAATGTGAC
AATATCTTCTTTCGTCACATATAGATTGATTTTAATGTAGTATTCATGACGATATAAATTATTAA
TAAAAATATTATATAATTTAATGATGTAACAAATTGTCATGCAATATAAGTTATAAAAATGAC
Found at i:39716 original size:13 final size:12
Alignment explanation
Indices: 39699--39724 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
39689 TTTTCTTTAT
39699 ATTTTTCTATGA
1 ATTTTTCTATGA
39711 ATTTTTCTATGA
1 ATTTTTCTATGA
39723 AT
1 AT
39725 AACAATTTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.27, C:0.08, G:0.08, T:0.58
Consensus pattern (12 bp):
ATTTTTCTATGA
Found at i:42544 original size:24 final size:24
Alignment explanation
Indices: 42517--42562 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
42507 TTTATTAGTT
* *
42517 TAATTTAATTTATAAAATTATTAA
1 TAATTAAATATATAAAATTATTAA
*
42541 TAATTAAATATATAATATTATT
1 TAATTAAATATATAAAATTATT
42563 GTATATATAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (24 bp):
TAATTAAATATATAAAATTATTAA
Found at i:43197 original size:23 final size:22
Alignment explanation
Indices: 43163--43210 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 22
43153 TTTTTTTCTA
*
43163 TTTATCTTTATTTTTATGATACT
1 TTTATCTTTATTTTTATAATA-T
43186 TTTAT-TTCTATTTTTATAATAT
1 TTTATCTT-TATTTTTATAATAT
43208 TTT
1 TTT
43211 CTCTCATTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
22 6 0.26
23 17 0.74
ACGTcount: A:0.23, C:0.06, G:0.02, T:0.69
Consensus pattern (22 bp):
TTTATCTTTATTTTTATAATAT
Found at i:43801 original size:24 final size:23
Alignment explanation
Indices: 43756--43801 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 23
43746 TACTCAACAC
43756 ATAAATTTAATGTATAATAATAA
1 ATAAATTTAATGTATAATAATAA
43779 ATAATATTATAATGTA-AATAATA
1 ATAA-ATT-TAATGTATAATAATA
43802 TACAACATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 4 0.19
24 10 0.48
25 7 0.33
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.39
Consensus pattern (23 bp):
ATAAATTTAATGTATAATAATAA
Found at i:44897 original size:24 final size:25
Alignment explanation
Indices: 44870--44916 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
44860 ACAACTAAAT
* *
44870 ATGTTGTATATTATT-TACATTATA
1 ATGTTATATATCATTATACATTATA
44894 ATGTTATATATCATTATACATTA
1 ATGTTATATATCATTATACATTA
44917 AATTTACGTG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 13 0.65
25 7 0.35
ACGTcount: A:0.36, C:0.06, G:0.06, T:0.51
Consensus pattern (25 bp):
ATGTTATATATCATTATACATTATA
Found at i:52473 original size:25 final size:26
Alignment explanation
Indices: 52445--52493 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
52435 CAAAATCAAA
*
52445 TCCAATG-TCCAAAATAAGTATAATG
1 TCCAATGTTACAAAATAAGTATAATG
*
52470 TCCAATGTTACAAAATAATTATAA
1 TCCAATGTTACAAAATAAGTATAA
52494 GTAATAAACA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 7 0.33
26 14 0.67
ACGTcount: A:0.47, C:0.14, G:0.08, T:0.31
Consensus pattern (26 bp):
TCCAATGTTACAAAATAAGTATAATG
Found at i:55175 original size:103 final size:103
Alignment explanation
Indices: 54996--55213 Score: 418
Period size: 103 Copynumber: 2.1 Consensus size: 103
54986 GTAGAGGGTC
*
54996 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAACAGGTGTGAGGTCTGTTGAGACACATAC
1 TATGTGGTCCTTCGAGACATATATGTATTCTTTGGAACAGGTGTGAGGTCTGTTGAGACACATAC
55061 TTGATCTTTGGCATATGTATATGATTCTTAAGGAATGA
66 TTGATCTTTGGCATATGTATATGATTCTTAAGGAATGA
*
55099 TATGTGGTCCTTCGAGACATATATGTATTCTTTGGAACATGTGTGAGGTCTGTTGAGACACATAC
1 TATGTGGTCCTTCGAGACATATATGTATTCTTTGGAACAGGTGTGAGGTCTGTTGAGACACATAC
55164 TTGATCTTTGGCATATGTATATGATTCTTAAGGAATGA
66 TTGATCTTTGGCATATGTATATGATTCTTAAGGAATGA
55202 TATGTGGTCCTT
1 TATGTGGTCCTT
55214 ATGGACATTA
Statistics
Matches: 113, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
103 113 1.00
ACGTcount: A:0.25, C:0.13, G:0.24, T:0.38
Consensus pattern (103 bp):
TATGTGGTCCTTCGAGACATATATGTATTCTTTGGAACAGGTGTGAGGTCTGTTGAGACACATAC
TTGATCTTTGGCATATGTATATGATTCTTAAGGAATGA
Found at i:55268 original size:23 final size:23
Alignment explanation
Indices: 55242--55292 Score: 68
Period size: 23 Copynumber: 2.2 Consensus size: 23
55232 CACTACGGTA
55242 CAATTCTACGCGACACTCT-GGTG
1 CAATTCTACGCGACACT-TAGGTG
* *
55265 CAATTCTACGTGGCACTTAGGTG
1 CAATTCTACGCGACACTTAGGTG
55288 CAATT
1 CAATT
55293 ATATGAGCTG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 1 0.04
23 24 0.96
ACGTcount: A:0.24, C:0.25, G:0.22, T:0.29
Consensus pattern (23 bp):
CAATTCTACGCGACACTTAGGTG
Found at i:55518 original size:20 final size:20
Alignment explanation
Indices: 55493--55530 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
55483 CATTTTGGCA
55493 ATTACT-TTATATTTATTGAT
1 ATTACTATTATA-TTATTGAT
55513 ATTACTATTATATTATTG
1 ATTACTATTATATTATTG
55531 CCTCACTAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.58
Consensus pattern (20 bp):
ATTACTATTATATTATTGAT
Found at i:62161 original size:103 final size:103
Alignment explanation
Indices: 61982--62199 Score: 409
Period size: 103 Copynumber: 2.1 Consensus size: 103
61972 GTAGAGGGTC
* * *
61982 TATGTGGTCCTTCGGGACATATATGTATTCTTTGGAATAGGTGTGAGGTCTGTTGAGACACATAC
1 TATGTGGTCCTTCGAGACATATATGTATTCTTTGGAACAGGTGTGAGGTCTGTTGAAACACATAC
62047 TTGATCTTTGGCATATGTATATGATTCTTAAGGAATGA
66 TTGATCTTTGGCATATGTATATGATTCTTAAGGAATGA
62085 TATGTGGTCCTTCGAGACATATATGTATTCTTTGGAACAGGTGTGAGGTCTGTTGAAACACATAC
1 TATGTGGTCCTTCGAGACATATATGTATTCTTTGGAACAGGTGTGAGGTCTGTTGAAACACATAC
62150 TTGATCTTTGGCATATGTATATGATTCTTAAGGAATGA
66 TTGATCTTTGGCATATGTATATGATTCTTAAGGAATGA
62188 TATGTGGTCCTT
1 TATGTGGTCCTT
62200 ATGAATATTA
Statistics
Matches: 112, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
103 112 1.00
ACGTcount: A:0.25, C:0.12, G:0.24, T:0.38
Consensus pattern (103 bp):
TATGTGGTCCTTCGAGACATATATGTATTCTTTGGAACAGGTGTGAGGTCTGTTGAAACACATAC
TTGATCTTTGGCATATGTATATGATTCTTAAGGAATGA
Found at i:62249 original size:23 final size:23
Alignment explanation
Indices: 62216--62278 Score: 83
Period size: 23 Copynumber: 2.7 Consensus size: 23
62206 ATTATTATAT
*
62216 GGCACTACGGTGCACTTCTACGC
1 GGCACTACGGTGCAATTCTACGC
* *
62239 GGCACTCCGGTGCAATTCTACGT
1 GGCACTACGGTGCAATTCTACGC
62262 GGCACTTA-GGTGCAATT
1 GGCAC-TACGGTGCAATT
62279 ATATGAGCTG
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
23 34 0.97
24 1 0.03
ACGTcount: A:0.19, C:0.29, G:0.27, T:0.25
Consensus pattern (23 bp):
GGCACTACGGTGCAATTCTACGC
Found at i:64833 original size:41 final size:41
Alignment explanation
Indices: 64764--64843 Score: 108
Period size: 41 Copynumber: 2.0 Consensus size: 41
64754 CAAGCCTTCG
*
64764 GTATGGATACTATTTCATCCTGTATGGATACCAACACTCCA
1 GTATGGATACTATTTCATCCGGTATGGATACCAACACTCCA
* **
64805 GTATGGATACTAGTTT-ATCCGGTTTGGATATTAACACTC
1 GTATGGATACTA-TTTCATCCGGTATGGATACCAACACTC
64844 TAGTGTCGAT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
41 31 0.91
42 3 0.09
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.35
Consensus pattern (41 bp):
GTATGGATACTATTTCATCCGGTATGGATACCAACACTCCA
Found at i:64855 original size:41 final size:41
Alignment explanation
Indices: 64764--64855 Score: 96
Period size: 41 Copynumber: 2.2 Consensus size: 41
64754 CAAGCCTTCG
* *
64764 GTATGGATACTATTTCATCCTGTATGGATACCAACACTCCA
1 GTATCGATACTATTTCATCCGGTATGGATACCAACACTCCA
* * ** *
64805 GTATGGATACTAGTTT-ATCCGGTTTGGATATTAACACTCTA
1 GTATCGATACTA-TTTCATCCGGTATGGATACCAACACTCCA
*
64846 GTGTCGATAC
1 GTATCGATAC
64856 CAAAGGGTCG
Statistics
Matches: 43, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
41 40 0.93
42 3 0.07
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (41 bp):
GTATCGATACTATTTCATCCGGTATGGATACCAACACTCCA
Found at i:71519 original size:114 final size:114
Alignment explanation
Indices: 71314--71549 Score: 427
Period size: 114 Copynumber: 2.1 Consensus size: 114
71304 AAATTACCTA
*
71314 ATGGAATACATATTTCATCTGGCCTGAATGAAGTTGCAGCCTGCAGGCAGCATAGGAAGCACCTG
1 ATGGCATACATATTTCATCTGGCCTGAATGAAGTTGCAGCCTGCAGGCAGCATAGGAAGCACCTG
*
71379 ATTAAACTAATAATGTCTTCAAAATGTTAGATGTAACAATCAAATATTT
66 ATTAAACTAATAATGTCTTCAAAATGTTAGATGCAACAATCAAATATTT
*
71428 ATGGCATACATATTTCATCTGGCCTGAATGAAGTTGCAGCTTGCAGGCAGCATAGGAAGCACCTG
1 ATGGCATACATATTTCATCTGGCCTGAATGAAGTTGCAGCCTGCAGGCAGCATAGGAAGCACCTG
* *
71493 GTTAAACTAATAATGTCTTCAAAATGTTAGATGCAACAATGAAATATTT
66 ATTAAACTAATAATGTCTTCAAAATGTTAGATGCAACAATCAAATATTT
71542 ATGGCATA
1 ATGGCATA
71550 AATCTTCATA
Statistics
Matches: 117, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
114 117 1.00
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.29
Consensus pattern (114 bp):
ATGGCATACATATTTCATCTGGCCTGAATGAAGTTGCAGCCTGCAGGCAGCATAGGAAGCACCTG
ATTAAACTAATAATGTCTTCAAAATGTTAGATGCAACAATCAAATATTT
Done.