genome.fa.s5293.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005293.1 Hibiscus syriacus cultivar Beakdansim tig00011970_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91470

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
130--200	30	2.4	30	97	0	133	29	29	19	21	1.98
709--750	18	2.5	17	80	7	50	54	23	7	14	1.64
1902--1968	31	2.2	31	94	0	116	25	20	14	38	1.91
1902--1998	31	3.1	31	86	0	104	25	21	14	38	1.92
4819--4887	20	3.2	20	75	16	59	33	0	4	62	1.15
18765--18799	18	2.1	16	89	10	52	25	17	17	40	1.90
21839--21865	14	1.9	14	100	0	54	40	14	29	14	1.86
30458--30511	23	2.3	23	96	0	99	25	18	14	40	1.89
39491--39584	20	4.7	20	79	7	91	31	24	19	24	1.98
40093--40169	19	4.0	19	86	1	91	48	22	16	12	1.80
40165--40361	19	10.8	19	75	12	171	11	22	20	45	1.83
40249--40336	33	2.6	33	96	1	158	13	26	20	39	1.90
40301--40359	20	3.0	20	82	0	64	15	22	16	45	1.84
42453--42586	42	3.2	42	76	0	169	21	36	18	23	1.95
42559--42623	21	3.1	21	66	4	51	23	36	20	20	1.95
42431--42595	84	2.0	84	95	0	294	22	35	17	24	1.95
42453--42623	42	4.1	41	71	11	132	22	35	18	23	1.96
43885--43918	14	2.4	14	95	0	59	32	0	23	44	1.54
44026--44072	19	2.5	19	96	0	85	44	21	21	12	1.85
44102--44222	33	3.9	31	81	12	158	15	22	19	42	1.89
44103--44160	19	3.3	19	68	22	63	13	24	18	43	1.87
44102--44221	61	1.9	63	89	8	190	15	22	20	41	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46517--46549	12	2.8	12	100	0	66	0	27	0	72	0.85
46724--46777	24	2.2	24	90	0	81	40	20	16	22	1.91
47562--47613	21	2.5	20	84	3	59	38	15	23	23	1.92
47612--47680	20	3.4	20	76	11	68	36	21	18	23	1.95
47640--47689	20	2.5	20	80	0	73	38	22	18	22	1.94
47903--47990	20	4.4	20	77	5	106	39	23	20	15	1.91
48022--48075	14	3.5	14	73	22	54	12	18	20	48	1.81
48004--48074	33	2.2	33	86	0	97	21	18	21	39	1.93
48202--48238	14	2.6	14	86	0	56	48	21	0	29	1.50
50100--50153	20	2.7	20	82	0	72	38	22	22	16	1.93
50156--50246	14	5.9	14	69	20	65	48	20	17	13	1.81
50140--50251	33	3.4	33	95	1	190	48	20	17	13	1.81
50140--50262	65	1.9	66	88	5	187	47	21	17	13	1.81
50280--50337	14	3.9	14	75	16	62	12	17	22	48	1.80
50263--50353	32	2.8	33	91	3	157	13	18	20	47	1.82
50338--50392	20	2.8	19	83	8	65	16	23	23	36	1.94
50871--50918	18	2.7	18	86	0	69	18	14	41	25	1.88
52238--52296	20	3.0	20	87	0	73	42	22	18	16	1.89
52559--52602	22	2.0	22	100	0	88	18	13	45	22	1.84
52770--52907	61	2.3	61	84	0	186	24	17	23	34	1.96
52770--52904	20	6.7	20	78	7	112	25	17	23	33	1.96
52975--53015	21	2.0	21	85	0	55	34	31	17	17	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66101--66167	11	6.3	11	74	11	50	55	1	2	40	1.24
66176--66214	19	2.1	19	100	0	78	41	15	10	33	1.81
67120--67193	22	3.4	22	92	0	121	31	32	21	14	1.94
67899--67943	2	22.5	2	100	0	90	48	0	0	51	1.00
70605--70661	15	3.7	15	92	2	96	15	28	28	28	1.96
70698--70766	15	4.3	16	75	10	61	18	27	31	21	1.97
70710--70766	15	3.7	15	77	9	69	17	28	33	21	1.96
70698--70766	32	2.2	32	91	0	111	18	27	31	21	1.97
70710--70774	15	4.2	15	73	7	58	18	27	32	21	1.97
72798--72848	22	2.3	22	100	0	102	27	33	25	13	1.94
77189--77302	11	10.3	11	88	1	165	28	14	26	31	1.94
77453--77529	32	2.4	32	93	0	127	20	16	24	37	1.93

Tables:   1

The End!