genome.fa.s5295.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005295.1 Hibiscus syriacus cultivar Beakdansim tig00011986_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83927

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53--91	17	2.3	17	100	0	78	35	30	5	28	1.79
5477--5540	26	2.5	26	82	2	67	64	6	9	20	1.45
5487--5540	26	2.1	25	90	10	83	62	5	9	22	1.45
17657--17723	28	2.4	27	78	7	80	8	8	1	80	0.96
17665--17714	9	5.4	9	78	4	55	8	8	2	82	0.93
18058--18096	20	1.9	21	84	5	53	33	0	38	28	1.57
21099--21197	3	33.0	3	87	0	144	38	1	0	60	1.04
21100--21197	27	3.6	27	92	0	160	38	1	0	60	1.04
21298--21332	16	2.2	16	100	0	70	5	57	17	20	1.60
23248--23294	24	2.1	21	84	11	58	34	2	2	61	1.20
30310--30650	114	3.0	114	94	0	574	33	15	20	31	1.94
37324--37391	9	8.4	8	82	10	68	0	8	8	82	0.85
37325--37387	16	3.8	16	79	8	72	0	9	9	80	0.89
37324--37387	25	2.6	24	85	7	92	0	9	9	81	0.88
37307--37391	42	2.0	43	88	6	131	0	10	11	77	0.99
40971--41028	22	2.6	22	88	0	89	32	15	13	37	1.87
41431--42107	113	6.0	113	91	2	1031	37	14	18	29	1.90
42442--42540	3	33.0	3	85	0	135	39	1	0	59	1.04
42653--42693	16	2.6	16	100	0	82	7	56	19	17	1.64
44801--44895	42	2.3	43	87	5	133	17	18	23	40	1.92
50329--50371	17	2.5	17	76	0	50	51	2	16	30	1.57
50436--50463	2	14.0	2	100	0	56	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50445--50495	24	2.0	25	88	11	77	37	0	3	58	1.16
50553--50589	19	2.0	19	94	5	67	27	27	5	40	1.78
50761--50785	2	12.5	2	100	0	50	52	0	0	48	1.00
51179--51532	20	17.2	20	76	9	293	38	25	19	16	1.92
51179--51532	62	5.8	62	79	10	309	38	25	19	16	1.92
51236--51532	42	7.2	42	87	6	344	37	26	19	16	1.93
51632--51681	5	9.6	5	97	2	82	24	56	20	0	1.43
52172--52289	6	20.5	6	98	0	183	0	16	54	28	1.43
52385--52694	20	15.2	20	76	10	272	16	18	24	40	1.91
52393--52694	40	7.4	39	84	5	300	16	18	25	39	1.91
52394--52611	62	3.6	61	86	9	286	16	18	25	38	1.92
52536--52632	42	2.3	40	89	7	122	18	17	27	36	1.94
52937--52962	6	4.3	6	100	0	52	0	38	15	46	1.46
55914--55976	30	2.2	30	85	5	94	30	15	3	50	1.60
55991--56015	13	1.9	13	100	0	50	40	24	8	28	1.83
57107--57228	30	4.1	30	90	6	187	43	12	0	44	1.41
57107--57228	58	2.1	59	89	6	185	43	12	0	44	1.41
57145--57226	16	5.4	16	64	29	54	46	12	0	41	1.41
57214--57299	30	2.9	29	81	10	102	32	6	3	56	1.43
57351--57467	29	4.1	29	77	14	118	36	9	1	52	1.44
57351--57455	29	3.5	29	81	7	120	38	9	1	50	1.46
57516--57589	30	2.5	30	78	12	89	55	0	8	36	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58023--58093	29	2.5	28	81	6	81	57	5	4	32	1.41
59039--59092	17	3.1	17	76	10	54	55	3	1	38	1.28
59116--59170	19	3.0	18	74	25	53	54	1	5	38	1.34
59129--59185	19	2.8	20	72	17	55	59	1	3	35	1.25
61496--61544	23	2.1	23	100	0	98	46	8	8	36	1.63
66398--66445	21	2.5	19	80	12	55	29	12	27	31	1.93
67007--67323	44	7.2	44	90	0	474	41	13	23	22	1.89
73771--73848	22	3.7	21	67	19	54	38	15	17	28	1.91
74269--74629	44	8.2	44	87	0	481	41	12	21	24	1.87
81355--81397	20	2.2	20	82	0	50	48	25	2	23	1.62

Tables:   1

The End!