genome.fa.s5296.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005296.1 Hibiscus syriacus cultivar Beakdansim tig00011988_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  182134

Tables:   1   

This is table  1  of  1  ( 106 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6422--6459	19	2.0	20	94	5	69	18	23	21	36	1.95
6525--6568	19	2.3	20	80	11	56	25	29	22	22	1.99
13699--14075	127	3.0	127	94	1	623	43	5	4	47	1.45
25990--26054	23	2.8	23	83	0	94	32	24	23	20	1.98
25991--26063	23	3.2	23	68	18	62	34	21	21	21	1.97
27056--27087	2	16.5	2	93	6	57	50	0	0	50	1.00
27470--27514	21	2.1	21	87	0	63	15	24	24	35	1.94
28406--28448	17	2.6	16	78	7	50	39	25	0	34	1.56
31086--31145	23	2.6	23	81	0	84	28	26	28	16	1.97
34198--34265	23	2.9	24	84	4	93	26	19	19	35	1.95
34196--34277	24	3.5	24	83	3	112	26	18	19	35	1.95
34355--34421	35	1.9	35	93	0	116	10	26	28	34	1.90
36193--36256	2	32.0	2	100	0	128	50	0	0	50	1.00
44664--44707	2	22.0	2	100	0	88	50	0	50	0	1.00
49415--49457	12	3.6	12	93	0	68	16	46	18	18	1.84
51840--51864	6	4.2	6	100	0	50	0	0	16	84	0.63
53325--53369	23	2.0	23	86	8	65	55	0	0	44	0.99
53595--53731	54	2.5	54	92	2	231	32	18	8	40	1.80
56281--56374	21	4.6	21	85	5	113	19	19	24	37	1.94
61732--61758	2	13.5	2	100	0	54	51	0	0	48	1.00
65941--65990	18	2.7	19	90	6	77	0	34	32	34	1.58
81525--81571	19	2.5	19	100	0	94	10	14	6	68	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86670--86802	59	2.2	60	80	4	144	34	15	15	34	1.89
87397--87435	17	2.3	17	100	0	78	28	17	25	28	1.98
87695--87746	24	2.2	24	79	10	61	42	1	0	55	1.10
88661--88877	102	2.1	103	97	0	409	33	13	10	42	1.78
92266--92292	2	13.5	2	100	0	54	51	0	48	0	1.00
96699--96742	15	2.9	15	96	0	79	34	4	2	59	1.30
96957--96984	2	14.0	2	100	0	56	50	0	0	50	1.00
102509--102546	20	2.0	20	90	10	62	42	0	0	57	0.98
103729--103841	60	1.9	60	83	7	149	32	21	3	42	1.70
103970--104147	60	3.0	61	76	10	170	43	6	19	30	1.77
105517--105632	44	2.7	43	86	4	169	30	21	15	32	1.94
105748--105882	42	3.1	43	80	9	116	27	23	15	33	1.95
106188--106225	20	1.9	20	89	10	60	50	5	0	44	1.24
106371--106408	20	1.9	20	89	10	60	50	5	0	44	1.24
108441--108506	24	2.8	24	88	0	96	54	19	12	13	1.70
108452--108507	14	4.3	14	71	17	57	53	21	12	12	1.71
112003--112029	2	13.5	2	100	0	54	51	0	0	48	1.00
113665--113714	22	2.2	22	82	3	55	32	12	22	34	1.90
113672--113726	22	2.5	22	81	0	65	38	7	20	34	1.80
122322--122478	64	2.5	64	79	8	176	27	18	19	35	1.95
128629--128662	15	2.3	15	89	0	50	32	32	17	17	1.94
129192--129312	64	1.9	64	83	10	158	28	15	14	41	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
129189--129345	64	2.5	63	77	12	151	28	16	17	38	1.91
130380--130516	69	2.0	69	97	0	256	34	18	11	35	1.88
131155--131201	20	2.3	20	82	7	60	38	25	17	19	1.92
131150--131340	40	4.8	40	81	13	159	39	22	17	20	1.93
131149--131321	60	2.9	60	74	16	212	37	22	18	21	1.94
131167--131341	20	8.7	22	81	10	123	38	22	17	21	1.93
131309--131418	39	2.8	40	80	5	118	39	22	10	28	1.86
131329--131418	19	4.7	19	83	5	110	36	22	10	31	1.87
131392--131438	18	2.5	19	82	6	60	29	23	14	31	1.95
132193--132226	12	2.8	12	90	0	50	55	29	0	14	1.40
132352--132405	24	2.2	24	86	0	72	24	18	16	40	1.90
134650--134685	18	2.0	18	94	0	63	55	22	2	19	1.56
134988--135026	14	2.9	14	82	17	55	41	30	20	7	1.80
136600--136697	21	4.7	21	76	13	85	23	17	33	25	1.96
138874--138920	20	2.4	20	92	3	78	48	23	17	10	1.77
139287--139351	22	3.0	21	84	4	60	21	16	43	18	1.88
139294--139351	22	2.6	22	88	0	89	18	18	43	18	1.89
139454--139656	20	10.1	20	84	1	253	17	15	24	42	1.88
139456--139687	121	1.9	120	89	4	360	18	15	24	41	1.89
139460--139687	40	5.7	41	82	7	254	18	15	24	41	1.89
139661--139708	20	2.4	20	96	0	87	20	18	25	35	1.95
139456--139687	60	3.8	60	86	4	308	18	15	24	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
150636--150745	7	15.7	7	100	0	220	0	41	0	58	0.98
154851--154914	30	2.1	30	91	0	101	32	6	18	42	1.76
155494--155550	17	3.6	16	73	22	50	52	1	1	43	1.21
158161--158196	18	2.0	18	88	0	54	27	27	16	27	1.97
163973--164031	28	2.1	27	90	3	91	16	11	18	52	1.74
170845--170901	25	2.2	26	84	6	80	47	10	12	29	1.74
171389--171430	22	2.0	21	86	13	59	45	2	0	52	1.13
173209--173372	15	10.5	15	82	10	186	48	0	1	50	1.11
173209--173372	30	5.2	30	83	11	213	48	0	1	50	1.11
173209--173370	61	2.6	60	86	9	209	48	0	1	49	1.11
173317--173412	22	4.2	22	67	12	68	37	0	8	54	1.31
173455--173499	22	2.1	21	91	4	72	33	2	15	48	1.57
173423--173792	54	6.9	54	82	10	463	35	0	12	51	1.44
173509--173551	22	2.0	22	100	0	86	34	0	13	51	1.42
173638--173825	31	6.7	31	72	24	184	36	0	12	50	1.45
173670--173711	22	2.0	21	95	4	75	35	2	14	47	1.57
173639--173795	53	3.0	52	93	5	271	36	0	12	50	1.44
173727--173766	21	1.9	21	94	0	71	37	0	12	50	1.41
173744--173825	30	2.6	31	92	3	139	35	0	12	52	1.39
173798--173848	21	2.5	21	70	3	59	31	1	15	50	1.55
173352--173950	108	5.5	107	77	15	592	34	0	13	51	1.44
173852--174007	28	5.5	30	74	16	145	32	0	13	53	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
173860--173926	30	2.3	28	81	18	84	32	0	11	55	1.37
173692--174086	191	2.1	187	90	7	638	33	0	13	52	1.44
173939--174015	28	2.5	32	79	16	108	32	0	11	55	1.36
173938--174144	103	2.1	94	86	10	274	31	0	13	54	1.43
174070--174112	22	2.0	22	100	0	86	34	0	13	51	1.42
174137--174194	30	1.9	31	89	3	91	41	10	6	41	1.66
174881--174927	24	2.0	24	95	0	85	27	21	17	34	1.95
174886--174932	24	1.9	24	91	4	76	25	21	17	36	1.94
177291--177323	2	16.5	2	100	0	66	51	48	0	0	1.00
177555--177619	21	3.2	20	67	20	55	26	43	12	18	1.85
177520--177619	39	2.5	41	90	4	159	27	41	13	19	1.88
179009--179058	22	2.3	22	92	0	82	24	14	46	16	1.83
179158--179291	60	2.2	60	90	1	207	35	14	21	28	1.92
179136--179245	40	2.7	39	76	15	116	33	13	23	29	1.93
179156--179369	20	10.6	19	69	13	90	34	14	21	30	1.92
179336--179384	20	2.5	19	74	9	53	24	18	24	32	1.97
180076--180114	3	13.0	3	89	10	62	69	0	0	30	0.89
181144--181188	22	2.0	22	95	0	81	26	4	20	48	1.68

Tables:   1

The End!