genome.fa.s5298.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005298.1 Hibiscus syriacus cultivar Beakdansim tig00011994_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  119684

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5459--5671	110	1.9	109	83	4	277	30	21	17	30	1.96
5445--5681	54	4.4	54	84	6	268	30	21	17	29	1.96
5474--5710	54	4.3	53	81	7	201	30	20	17	30	1.96
7044--7142	30	3.2	30	81	2	108	48	11	3	37	1.54
8483--8811	37	8.8	37	81	12	347	43	4	7	44	1.53
8551--8577	2	13.5	2	100	0	54	51	0	0	48	1.00
8482--8649	80	2.1	80	88	3	257	44	4	6	44	1.51
11636--11676	16	2.6	16	84	0	55	34	26	21	17	1.95
13129--13199	36	2.0	36	91	0	115	16	12	11	59	1.61
13698--13896	99	2.0	98	90	2	310	34	16	19	30	1.93
15766--16027	43	6.1	40	90	2	263	25	20	22	31	1.98
15766--16027	86	3.0	86	89	3	386	25	20	22	31	1.98
15770--16026	129	2.0	129	89	0	397	24	20	22	31	1.98
15799--16079	43	6.5	43	87	2	208	27	21	20	30	1.98
15799--16077	86	3.2	85	85	3	335	26	21	20	30	1.98
15799--16077	129	2.2	129	85	2	373	26	21	20	30	1.98
16224--16282	21	2.8	21	84	0	73	55	20	5	18	1.61
20389--20780	41	9.6	41	73	10	266	31	18	19	30	1.96
20446--20751	82	3.8	82	77	7	293	33	19	18	28	1.96
21012--21669	85	7.8	85	88	0	906	35	19	18	26	1.95
22230--22259	2	15.0	2	100	0	60	50	0	0	50	1.00
22330--22653	73	4.3	73	75	15	290	45	5	7	42	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22330--22653	118	2.9	108	84	8	330	45	5	7	42	1.54
22330--22653	36	8.6	37	80	11	324	45	5	7	42	1.54
22480--22638	83	1.9	81	89	5	248	47	6	6	39	1.54
22563--22677	35	3.1	36	85	7	151	50	5	3	40	1.42
22711--22784	6	11.3	6	79	16	58	20	4	0	75	0.96
22717--22784	20	3.4	19	80	13	75	19	4	0	76	0.95
22740--22785	14	3.3	14	79	11	58	15	4	0	80	0.86
28961--28989	2	14.5	2	100	0	58	48	0	0	51	1.00
34726--34768	17	2.5	17	76	0	50	27	11	11	48	1.74
34762--34865	35	3.0	36	80	10	101	32	13	13	40	1.83
34797--34867	18	4.1	17	89	3	88	33	14	12	39	1.83
39291--39325	14	2.6	14	90	4	54	8	31	0	60	1.27
39795--39834	21	2.0	21	90	5	64	40	10	22	27	1.86
57986--58120	2	67.5	2	100	0	270	0	0	49	50	1.00
58179--58787	81	7.5	81	88	0	862	36	11	19	33	1.87
86578--86630	19	2.7	20	82	8	63	30	20	20	28	1.98
86775--86824	19	2.6	19	100	0	100	32	20	30	18	1.96
88245--88336	20	4.6	20	76	2	78	36	25	11	26	1.90
91949--92256	81	3.8	81	88	3	451	36	10	20	32	1.87
92207--92327	60	2.0	59	85	1	161	33	15	23	27	1.95
94008--94032	13	1.9	13	100	0	50	40	0	0	60	0.97
95296--95337	12	3.6	12	96	3	77	28	7	7	57	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96499--96748	51	5.0	50	79	5	204	49	10	10	30	1.70
96920--97013	49	1.9	49	82	8	120	52	0	4	43	1.21
97513--97564	27	1.9	27	88	7	79	34	11	15	38	1.83
98016--98052	19	1.9	19	88	0	56	54	5	0	40	1.24
98020--98066	19	2.5	19	92	0	76	51	0	2	46	1.13
98498--98523	2	13.0	2	100	0	52	50	0	0	50	1.00
99645--99697	27	2.0	27	84	0	70	11	41	11	35	1.77
99975--100015	20	2.0	20	90	9	64	51	2	4	41	1.36
101455--101487	6	5.8	6	86	13	52	84	0	15	0	0.61
101456--101487	11	2.9	11	100	0	64	84	0	15	0	0.63
115113--115144	2	16.0	2	100	0	64	50	0	0	50	1.00
115683--115726	22	1.9	24	86	9	65	50	2	6	40	1.42
117259--117488	65	3.6	65	77	11	208	29	24	18	27	1.98

Tables:   1

The End!