genome.fa.s5299.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005299.1 Hibiscus syriacus cultivar Beakdansim tig00011996_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  80515

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2244--2276	6	5.5	6	96	0	57	72	27	0	0	0.85
6235--6303	32	2.2	32	89	0	102	21	34	26	17	1.95
6235--6291	15	3.7	15	75	9	60	21	36	26	15	1.93
8905--8958	27	2.0	27	100	0	108	18	14	29	37	1.91
9700--9736	14	2.6	14	95	0	65	13	35	0	51	1.41
12515--12559	22	2.0	22	82	4	54	31	31	26	11	1.91
13772--14135	121	3.0	121	93	0	638	25	14	24	35	1.93
13996--14031	18	2.0	18	100	0	72	11	22	33	33	1.89
14138--14210	23	3.3	23	82	3	96	23	21	23	31	1.98
18020--18064	22	2.0	22	82	4	54	33	33	24	8	1.86
19380--19415	18	2.0	18	100	0	72	11	22	33	33	1.89
19277--19640	121	3.0	121	95	0	656	25	13	25	36	1.92
19501--19536	18	2.0	18	94	0	63	13	19	33	33	1.91
19352--19538	62	3.1	62	63	26	153	24	13	25	36	1.92
19647--19707	23	2.7	23	89	0	95	19	26	27	26	1.99
20941--21006	2	33.0	2	100	0	132	50	0	0	50	1.00
21006--21034	2	14.5	2	100	0	58	0	0	48	51	1.00
22195--22235	18	2.3	18	91	0	64	46	17	4	31	1.69
22361--22396	18	2.0	18	89	10	56	38	22	5	33	1.77
30700--30775	30	2.5	30	76	10	73	51	1	0	47	1.09
30748--30802	20	2.8	20	78	8	58	52	0	0	47	1.00
33939--33970	8	4.0	8	91	0	55	59	12	3	25	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43416--43443	13	2.2	13	100	0	56	57	7	7	28	1.52
43630--43734	52	2.0	52	100	0	210	9	29	11	49	1.70
45779--45812	16	2.1	16	100	0	68	55	20	5	17	1.62
49122--49162	21	1.9	21	85	5	55	41	24	2	31	1.68
50026--50056	4	8.0	4	92	7	55	74	0	0	25	0.82
50885--50953	32	2.2	32	86	0	93	23	34	24	17	1.96
50984--51016	16	2.1	16	94	0	57	36	30	18	15	1.91
54356--54392	14	2.6	14	100	0	74	13	37	0	48	1.43
57171--57215	22	2.0	22	83	12	56	31	33	28	6	1.83
58455--58490	18	2.0	18	100	0	72	11	22	33	33	1.89
58352--58715	121	3.0	121	93	0	638	25	14	24	35	1.93
58576--58611	18	2.0	18	94	0	63	11	19	33	36	1.87
58427--58613	62	3.1	62	64	23	151	25	13	25	36	1.92
58722--58782	23	2.7	23	89	0	95	19	26	27	26	1.99
62597--62641	22	2.0	22	86	4	63	31	33	26	8	1.87
63915--63950	18	2.0	18	100	0	72	11	22	33	33	1.89
63812--64175	121	3.0	121	94	0	647	25	14	25	35	1.93
64036--64071	18	2.0	18	100	0	72	11	22	33	33	1.89
63887--64073	62	3.1	62	63	26	153	25	13	25	35	1.93
64173--64250	23	3.3	23	81	1	93	24	19	23	33	1.97
65919--65959	18	2.3	18	91	0	64	46	17	4	31	1.69
66085--66120	18	2.0	18	89	10	56	38	22	5	33	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74423--74498	30	2.5	30	76	10	73	51	1	0	47	1.09

Tables:   1

The End!