genome.fa.s530.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000530.1 Hibiscus syriacus cultivar Beakdansim tig00001019_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75391

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11019--11102	29	2.8	31	80	7	95	36	2	2	58	1.24
18621--18685	30	2.2	30	100	0	130	21	7	10	60	1.55
19978--20056	31	2.5	32	77	6	90	32	12	11	43	1.79
25202--25537	134	2.5	135	86	3	448	24	18	31	25	1.97
25591--25752	30	5.3	30	81	10	159	41	12	13	32	1.82
25618--25749	33	4.1	33	85	4	141	39	11	14	34	1.82
25689--25758	33	2.1	33	89	0	104	45	10	11	32	1.73
25714--25871	66	2.4	66	82	7	180	44	13	13	28	1.81
26859--26901	17	2.5	17	100	0	86	30	11	16	41	1.83
29560--29599	21	1.9	21	94	0	71	27	20	22	30	1.98
29590--29726	64	2.2	64	81	6	154	33	18	22	25	1.96
29714--29771	20	2.6	22	86	10	75	31	18	22	27	1.97
34207--34283	31	2.5	31	80	2	91	27	31	27	14	1.95
34160--34283	63	2.0	63	82	6	153	25	29	28	16	1.97
35172--35229	17	3.4	17	92	0	98	17	22	43	17	1.88
35223--35294	19	3.8	19	92	5	119	25	31	26	16	1.96
35223--35311	9	9.3	9	76	11	79	26	29	25	17	1.98
41563--41639	31	2.5	31	80	2	91	27	31	27	14	1.95
41516--41639	63	2.0	63	82	6	153	25	29	28	16	1.97
42519--42586	34	2.0	35	88	2	102	17	20	44	17	1.87
42528--42586	17	3.5	17	95	0	100	15	18	47	18	1.83
42584--42655	19	3.8	19	90	9	112	25	30	26	18	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42600--42672	9	7.7	9	77	11	74	28	28	24	17	1.98
44041--44142	45	2.3	44	79	5	107	34	17	22	25	1.96
44170--44207	20	1.9	20	94	0	67	31	18	23	26	1.97
48261--48297	16	2.3	17	81	13	51	56	8	5	29	1.51
50355--50567	91	2.3	91	84	1	275	27	18	29	24	1.98
50815--50979	30	5.4	29	75	15	120	43	12	14	30	1.82
50884--50984	33	3.1	33	84	4	125	37	10	14	36	1.82
53818--53856	20	1.9	21	94	5	71	38	10	23	28	1.87
54061--54116	24	2.3	24	96	0	103	41	10	10	37	1.75
58672--58713	13	3.3	12	83	9	57	69	0	2	28	1.01
63076--63140	33	2.0	33	88	8	98	33	12	9	44	1.74

Tables:   1

The End!