genome.fa.s5300.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005300.1 Hibiscus syriacus cultivar Beakdansim tig00011997_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  114328

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68--168	37	2.8	36	78	12	93	44	13	3	37	1.63
102--181	37	2.2	35	82	12	99	41	13	5	40	1.67
1770--1815	20	2.3	20	80	0	56	43	4	0	52	1.21
1804--1851	24	2.0	23	84	4	60	43	2	0	54	1.12
7666--7759	35	2.7	35	80	1	109	42	12	21	23	1.87
9901--9954	23	2.3	23	81	12	58	12	5	3	77	1.07
11657--11682	13	2.0	13	100	0	52	15	0	0	84	0.62
12793--12832	19	2.1	19	90	0	62	47	30	0	22	1.52
12824--12874	21	2.5	22	78	12	63	47	25	0	27	1.53
14038--14122	22	3.9	22	92	0	116	43	22	11	22	1.85
14270--14305	16	2.2	17	90	5	56	47	0	2	50	1.15
25715--25764	17	3.0	16	86	13	66	24	0	4	72	1.02
30588--30666	39	2.0	39	80	4	88	32	17	12	36	1.88
30727--30902	76	2.4	76	80	9	193	30	14	14	40	1.86
30874--31267	39	10.5	39	85	8	421	26	18	16	38	1.92
30874--31204	79	4.4	76	83	9	394	26	19	17	37	1.93
31057--31114	30	1.9	30	92	0	98	27	22	12	37	1.89
30900--31252	187	1.9	180	85	6	476	26	19	16	37	1.92
31018--31153	69	2.0	68	94	1	236	26	19	16	36	1.94
30978--31177	108	1.8	109	90	3	323	26	20	16	37	1.93
31105--31267	36	4.4	36	92	2	245	22	19	16	41	1.90
31167--31288	21	6.4	20	69	21	93	23	18	13	43	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31203--31324	57	2.1	57	90	0	190	25	18	13	42	1.86
31167--31359	93	2.1	92	91	2	307	25	19	13	41	1.88
31263--31377	35	3.3	35	85	2	160	29	20	12	37	1.89
31264--31473	71	2.9	73	81	9	216	30	19	13	37	1.90
31817--31942	64	2.0	64	91	0	207	37	17	19	25	1.94
31879--32085	91	2.3	91	90	0	324	36	16	23	23	1.94
37846--37896	19	2.9	17	86	13	68	0	19	1	78	0.85
39754--39797	9	5.2	8	84	15	54	27	0	2	70	0.99
39739--39810	16	3.9	18	75	15	60	25	0	4	70	1.04
39739--39797	9	6.6	9	77	16	52	25	0	5	69	1.09
39707--39810	25	4.0	25	74	15	70	25	0	4	68	1.16
42795--42851	13	4.3	13	76	12	53	70	5	15	8	1.31
42806--42869	27	2.4	27	81	2	76	71	6	17	4	1.24
42821--42864	15	3.2	14	90	9	65	75	6	13	4	1.17
42825--42866	12	3.2	13	90	10	59	76	7	14	2	1.10
44296--44484	65	2.9	67	87	7	280	28	15	12	42	1.84
44367--44585	120	1.8	118	91	3	359	25	16	15	42	1.88
44487--44717	65	3.5	65	88	1	329	23	19	15	41	1.90
44565--44678	29	3.7	29	70	21	79	23	19	15	41	1.90
44303--44650	185	1.9	184	87	2	509	25	17	14	42	1.87
44740--45111	134	2.8	133	86	2	464	27	29	16	25	1.97
44719--45111	131	3.0	132	83	4	472	28	29	17	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54378--54416	20	2.0	20	89	0	60	64	0	2	33	1.08
56575--56628	24	2.2	25	83	9	76	62	0	3	33	1.12
57285--57497	86	2.5	86	93	1	365	25	19	18	36	1.95
57757--58897	106	11.0	106	91	4	1848	22	18	24	33	1.96
57578--58897	411	3.2	412	93	4	2152	22	18	25	33	1.97
58505--58893	200	1.9	200	96	0	715	21	19	25	33	1.97
62541--62578	19	2.0	19	89	0	58	63	0	2	34	1.09
64739--64791	24	2.2	25	83	10	74	62	0	3	33	1.13
68740--68781	16	2.7	15	85	3	57	54	0	0	45	0.99
68740--68776	16	2.4	16	90	4	58	56	0	0	43	0.99
69164--69210	19	2.5	19	82	6	51	44	6	2	46	1.40
71956--72031	36	2.1	36	97	0	143	31	10	14	43	1.79
74369--74414	18	2.4	20	75	7	51	60	4	0	34	1.16
88573--88617	4	11.2	4	100	0	90	51	0	24	24	1.49
88615--88649	4	8.8	4	87	12	54	51	22	25	0	1.48
90984--91008	11	2.3	11	100	0	50	44	16	12	28	1.83
93398--93426	2	15.0	2	92	7	51	51	0	0	48	1.00
93459--93524	24	2.8	24	93	2	107	33	3	13	50	1.57
93515--93579	20	3.3	20	78	6	62	30	1	18	49	1.57
94705--94738	16	2.1	16	88	0	50	38	14	20	26	1.91
107087--107117	12	2.5	13	89	10	55	48	6	9	35	1.62

Tables:   1

The End!