genome.fa.s5301.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005301.1 Hibiscus syriacus cultivar Beakdansim tig00011998_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65477

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4422--4454	15	2.1	16	88	5	50	45	3	0	51	1.16
4597--4671	22	3.4	22	94	0	123	24	10	20	45	1.82
4597--4681	22	3.9	22	92	0	116	22	11	22	43	1.85
5876--5915	19	2.1	19	90	0	62	22	0	30	47	1.52
5852--5927	33	2.2	33	81	9	82	25	0	30	44	1.54
10919--11007	35	2.5	35	81	0	106	24	21	12	41	1.87
16926--16979	21	2.6	20	80	8	63	55	0	3	40	1.17
17106--17167	26	2.4	27	78	8	74	61	0	1	37	1.06
17149--17194	24	1.9	24	81	0	56	67	2	2	28	1.14
18624--18850	38	6.2	35	73	18	162	39	3	12	43	1.62
18643--18867	74	3.1	71	75	15	192	40	4	12	43	1.61
18799--18825	13	2.1	13	100	0	54	44	7	7	40	1.60
18625--18832	112	1.9	111	80	13	248	40	3	12	42	1.62
18897--18956	16	3.7	16	75	16	52	35	1	1	61	1.16
18921--18963	19	2.2	20	87	4	61	30	0	0	69	0.88
25107--25160	20	2.9	18	73	21	58	37	14	22	25	1.93
25207--25248	22	1.9	22	95	0	75	38	14	28	19	1.90
25209--25261	22	2.4	22	83	0	70	41	15	22	20	1.89
25885--25958	23	3.2	23	90	0	112	37	17	21	22	1.94
25938--25986	21	2.3	22	86	10	66	22	14	28	34	1.93
41287--41384	37	2.6	37	83	6	117	41	4	11	42	1.59
41368--41412	2	22.5	2	100	0	90	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41420--41540	36	3.2	37	80	13	131	42	3	13	40	1.60
41485--41600	37	3.3	34	74	17	94	43	2	11	42	1.54
41598--41630	17	1.9	17	93	0	57	45	3	6	45	1.43
41664--41722	24	2.5	24	88	5	84	27	1	0	71	0.96
41681--41724	14	3.0	15	87	12	65	27	0	0	72	0.85
41651--41722	12	6.2	12	76	15	71	30	1	0	68	0.99
41664--41717	4	13.5	4	78	21	51	27	1	0	70	0.98
42848--42890	14	3.1	14	80	3	52	18	4	0	76	0.95
43908--44358	54	8.4	54	85	3	496	27	15	19	37	1.92
51036--51377	54	6.4	54	83	6	383	28	18	18	35	1.94
51034--51376	160	2.1	162	85	4	462	27	18	18	35	1.94
51756--51936	95	1.9	93	81	6	215	31	24	10	33	1.89
60639--60706	31	2.3	30	80	12	77	41	8	17	32	1.80

Tables:   1

The End!