genome.fa.s5302.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005302.1 Hibiscus syriacus cultivar Beakdansim tig00011999_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64333

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6446--6597	72	2.1	72	80	2	162	36	21	17	24	1.94
7618--7668	13	3.9	13	86	0	75	33	9	15	41	1.80
9269--9314	16	3.0	16	75	9	51	10	17	8	63	1.51
13337--13388	20	2.5	20	84	9	70	26	19	25	28	1.98
15763--15873	58	1.9	59	86	1	161	26	18	18	36	1.94
19384--19490	43	2.3	48	84	12	134	31	0	13	55	1.38
29278--29307	15	2.0	15	100	0	60	46	6	6	40	1.56
29404--29445	18	2.3	18	84	8	50	45	11	2	40	1.54
30091--30159	29	2.3	31	76	14	74	30	14	8	46	1.75
49909--49961	22	2.4	22	87	6	63	39	0	15	45	1.46
53471--53524	28	1.9	28	85	7	74	61	1	0	37	1.07
53489--53528	21	2.0	21	90	5	64	60	2	0	37	1.11
53712--53764	21	2.5	21	87	6	81	22	26	16	33	1.96
53754--53805	21	2.5	21	87	3	70	38	17	23	21	1.93
53712--53887	21	8.5	21	68	14	62	30	21	18	28	1.97
53874--53970	20	4.8	20	76	3	86	40	14	19	25	1.90
54113--54179	21	3.2	21	66	6	55	23	35	20	19	1.95
54061--54179	42	2.8	42	81	5	107	22	36	18	22	1.95
55531--55566	14	2.6	14	95	0	63	33	0	22	44	1.53
55673--55762	33	2.7	33	87	3	128	45	22	20	12	1.83
55673--55733	19	3.5	19	70	21	60	44	19	22	13	1.85
55709--55762	19	3.1	19	70	29	57	46	25	18	9	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55759--55908	19	8.6	19	65	21	78	12	22	20	44	1.85
55762--55888	33	3.8	33	90	0	191	12	22	18	46	1.83
55882--55954	20	3.6	20	70	17	69	23	19	24	32	1.97
58202--58226	12	2.1	12	100	0	50	0	28	0	72	0.86
59140--59222	20	4.2	20	93	0	130	25	25	19	30	1.98
59565--59633	20	3.5	20	95	0	120	37	24	21	15	1.93
59563--59652	40	2.5	35	80	16	110	43	23	20	13	1.86
59665--59717	14	3.4	14	75	22	52	11	22	20	45	1.83
61294--61372	42	1.9	42	89	7	126	20	15	41	22	1.89
61315--61372	21	2.8	21	71	10	64	22	13	39	24	1.90
61712--61749	20	1.9	20	94	0	67	36	28	13	21	1.91
61829--61925	19	5.6	19	68	30	83	12	21	21	44	1.85
61851--61906	14	3.6	14	71	28	51	10	21	25	42	1.85
61834--61925	33	2.8	33	98	0	175	11	20	21	45	1.83
61910--61964	20	2.8	19	83	8	65	16	23	23	36	1.94
62502--62549	18	2.7	18	90	0	78	16	12	43	27	1.84
63840--63894	19	2.9	19	86	0	65	43	21	18	16	1.88
64001--64053	26	2.0	26	100	0	106	39	22	3	33	1.72

Tables:   1

The End!