Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005304.1 Hibiscus syriacus cultivar Beakdansim tig00012006_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88084

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
271--319
21
2.3
22
92
3
82
40
14
18
26
1.89
2132--2165
6
5.7
6
100
0
68
17
35
14
32
1.91
5822--5858
17
2.2
17
100
0
74
18
27
24
29
1.98
12587--12749
83
2.0
83
88
0
245
45
9
6
38
1.62
12706--12789
35
2.5
35
79
12
86
50
8
1
40
1.40
16985--17028
22
2.0
23
90
4
72
43
2
0
54
1.12
23255--23295
18
2.3
18
95
0
73
68
4
0
26
1.10
23260--23300
10
4.3
10
78
12
50
65
4
0
29
1.13
30888--30947
30
2.0
30
100
0
120
30
20
23
26
1.98
36151--36237
22
3.9
23
70
24
69
65
2
0
32
1.05
36702--36737
15
2.4
15
90
0
54
33
0
2
63
1.08
48371--48433
31
2.0
32
81
9
76
25
12
12
49
1.76
51012--51074
18
3.3
18
75
12
63
44
3
4
47
1.40
51057--51083
14
1.9
14
100
0
54
29
7
7
55
1.55
51646--51708
24
2.6
24
100
0
126
47
26
19
6
1.73
52329--52537
104
2.0
104
80
3
233
31
5
27
34
1.81
52989--53145
2
79.0
2
66
21
55
46
4
3
45
1.39
52993--53067
11
6.7
11
74
8
71
44
2
5
48
1.39
52952--53006
28
1.9
29
88
3
85
47
3
5
43
1.44
52989--53058
23
3.0
23
83
4
88
44
1
5
48
1.35
58716--58760
21
2.1
22
87
4
65
35
4
2
57
1.31
59811--59845
14
2.4
15
85
9
54
40
2
0
57
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59822--59868
25
1.9
24
86
4
67
51
2
0
46
1.13
61602--61627
13
2.0
13
100
0
52
38
7
0
53
1.30
61750--61776
4
6.8
4
100
0
54
25
0
0
74
0.83
65744--65796
24
2.2
24
100
0
106
35
7
13
43
1.72
78090--78161
30
2.4
30
90
0
108
16
20
31
30
1.95

Tables:   1

The End!