Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005306.1 Hibiscus syriacus cultivar Beakdansim tig00012009_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45291

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2719--2761
20
2.1
21
86
4
61
11
20
20
46
1.82
5675--5759
38
2.2
38
81
4
100
43
12
8
35
1.73
7853--7884
2
16.0
2
93
0
55
50
3
0
46
1.17
13129--13222
41
2.3
41
96
0
170
19
23
17
40
1.91
18660--18785
22
5.9
22
72
14
93
44
3
9
42
1.55
18673--18798
44
2.9
43
75
12
123
43
5
10
40
1.62
18753--18814
17
3.5
17
70
20
54
43
3
12
40
1.59
18827--18925
21
4.8
20
67
16
58
52
5
4
38
1.42
18896--18961
26
2.3
29
87
10
93
50
0
3
46
1.16
18943--18974
2
16.0
2
100
0
64
50
0
0
50
1.00
20235--20265
12
2.6
12
100
0
62
41
6
45
6
1.55
24568--24885
44
7.2
44
87
3
426
26
20
11
41
1.86
31483--31600
45
2.6
45
87
2
166
38
8
22
29
1.84
37850--37911
23
2.9
21
85
7
81
20
35
25
17
1.95
39561--39591
12
2.6
12
94
0
53
29
32
38
0
1.57
43123--43468
44
8.0
44
83
5
425
25
21
11
41
1.86
43205--43456
43
5.9
39
80
7
148
25
21
12
41
1.88
43108--43441
129
2.6
130
85
7
464
25
21
12
41
1.88

Tables:   1

The End!