Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005307.1 Hibiscus syriacus cultivar Beakdansim tig00012010_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104310

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3324--3855
182
2.9
182
92
2
885
27
19
20
31
1.97
4978--5086
35
3.1
35
68
6
96
30
16
11
42
1.83
4978--5137
70
2.2
71
82
12
186
28
18
12
40
1.87
5242--5316
39
1.9
39
86
5
107
26
21
13
38
1.90
5219--5536
106
3.1
105
90
4
488
30
20
11
37
1.88
5442--5512
35
2.0
36
86
2
99
23
21
15
39
1.91
5452--5522
35
2.0
35
83
0
88
25
23
12
38
1.90
5708--6331
103
6.0
104
87
5
838
33
26
17
22
1.96
5708--6331
208
3.0
206
87
5
859
33
26
17
22
1.96
6871--6975
37
2.8
37
82
0
129
41
14
12
31
1.82
7316--7445
48
2.8
45
84
12
138
31
3
3
62
1.26
7356--7432
21
3.7
20
77
16
66
35
1
1
62
1.12
7368--7449
29
2.8
29
83
5
85
34
2
0
63
1.08
7376--7420
18
2.4
18
85
7
54
31
2
0
66
1.04
7327--7431
49
2.1
48
86
10
142
33
2
1
61
1.21
7368--7449
25
3.4
25
71
20
68
34
2
0
63
1.08
7900--7938
19
2.0
21
85
10
55
17
10
0
71
1.12
9095--9184
29
3.1
29
82
7
103
36
16
4
42
1.69
9463--9553
48
1.9
48
88
2
139
26
7
16
49
1.72
9463--9595
47
2.8
49
82
8
141
28
8
14
48
1.72
10872--10910
3
12.7
3
83
5
51
64
5
0
30
1.15
16602--16703
3
35.3
3
90
7
122
35
5
0
58
1.22
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
18276--18305
10
3.0
10
90
0
51
10
6
3
80
1.01
20245--20336
13
7.2
12
75
20
64
77
4
16
2
1.03
20247--20332
19
4.8
16
70
24
55
77
4
15
2
1.02
20245--20336
26
3.6
25
76
15
82
77
4
16
2
1.03
20236--20304
14
5.3
13
74
22
65
78
5
14
1
1.01
21374--21468
32
3.0
32
92
1
147
31
13
25
29
1.94
21629--21766
62
2.2
65
82
5
165
29
13
15
41
1.85
21883--22373
131
3.7
131
78
5
454
26
30
16
26
1.96
21906--22373
132
3.5
131
79
4
449
26
31
15
26
1.96
35098--35249
77
2.0
78
84
6
202
43
5
11
38
1.66
37241--37298
28
2.1
28
87
9
84
41
10
6
41
1.66
37503--37560
26
2.2
27
84
3
73
29
0
6
63
1.20
38823--38996
86
2.0
88
96
2
325
32
6
6
53
1.54
48511--48542
8
4.1
8
96
4
57
78
0
0
21
0.76
49049--49079
4
7.8
4
100
0
62
22
0
0
77
0.77
54853--54966
3
38.7
3
94
3
205
33
0
0
66
0.92
55458--55489
16
1.9
17
93
6
57
81
3
15
0
0.82
67736--67798
11
6.0
10
75
15
56
84
1
14
0
0.71
67736--67797
27
2.4
27
82
12
78
85
1
12
0
0.67
68941--69042
50
2.0
50
96
0
186
27
13
20
38
1.90
68927--69167
133
1.8
133
98
0
464
27
14
20
37
1.91
69075--69391
52
6.1
52
92
2
498
24
13
23
38
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
69333--69536
83
2.5
83
96
0
372
29
11
21
37
1.88
70094--70768
119
5.8
116
92
3
1051
37
13
21
27
1.91
71019--71094
3
25.7
3
94
2
136
34
0
0
65
0.93
76074--76115
22
1.9
22
85
0
57
21
9
7
61
1.50
80971--81021
20
2.5
21
84
6
61
27
0
3
68
1.07
81227--81280
23
2.2
25
75
18
60
51
0
0
48
1.00
81950--82073
60
2.1
60
82
0
149
30
13
17
37
1.89
86485--86590
39
2.7
39
80
13
112
34
17
2
44
1.64
86868--86927
25
2.4
25
81
10
70
41
6
0
51
1.28
88635--88692
23
2.5
23
100
0
116
58
3
10
27
1.47
89495--89550
26
2.1
27
93
3
96
37
37
5
19
1.75
90310--90347
14
2.6
15
83
8
51
63
0
10
26
1.27
90457--90498
19
2.1
21
79
20
54
69
0
11
19
1.19
91651--91708
21
3.0
18
79
16
62
75
0
1
22
0.89
91738--91868
55
2.3
58
83
11
164
41
10
5
42
1.62
91787--91836
23
2.2
23
82
13
59
36
10
6
48
1.61
91809--91911
38
2.7
38
86
7
131
41
9
4
43
1.59
91894--91929
2
18.5
2
94
5
65
47
0
0
52
1.00
91857--91970
56
2.1
54
83
9
142
45
6
2
45
1.42
97111--97174
22
3.0
21
75
6
65
62
3
14
20
1.45
97108--97191
43
1.9
44
90
2
134
61
2
14
21
1.43

Tables:   1

The End!