Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005308.1 Hibiscus syriacus cultivar Beakdansim tig00012013_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  103080

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5031--5061
12
2.5
12
94
5
53
58
0
3
38
1.15
5219--5260
8
5.0
8
86
11
57
73
0
2
23
0.94
5227--5260
13
2.6
13
82
17
52
76
0
0
23
0.79
6581--6615
18
2.0
18
94
5
63
5
22
17
54
1.64
7033--7544
105
5.0
105
82
7
613
22
18
24
34
1.96
7881--7949
36
1.9
36
90
0
111
40
15
20
23
1.91
9446--9502
16
3.7
15
77
17
55
0
15
7
77
0.98
9439--9503
25
2.7
25
75
15
66
0
16
7
75
1.03
12397--12427
12
2.5
12
94
5
53
58
0
3
38
1.15
14229--14313
23
3.5
24
80
12
86
76
2
5
15
1.08
14327--14363
2
18.5
2
100
0
74
51
0
0
48
1.00
14622--14650
2
14.5
2
100
0
58
51
0
0
48
1.00
14844--14872
2
14.5
2
100
0
58
51
0
0
48
1.00
14880--14926
11
4.2
11
86
5
58
68
4
6
21
1.30
15602--15706
37
2.8
37
88
0
156
30
15
14
40
1.87
16217--16438
41
5.5
41
77
8
132
32
19
19
28
1.96
16220--16588
121
3.0
119
79
6
339
30
17
19
32
1.95
16217--16609
42
9.6
40
76
7
324
29
18
19
32
1.96
16653--16694
18
2.3
18
91
0
66
16
30
2
50
1.58
19986--20319
42
7.9
42
85
3
377
24
22
20
32
1.97
23942--23985
13
3.5
13
87
6
63
18
50
15
15
1.79
24019--24075
24
2.3
26
77
20
68
56
0
0
43
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
24037--24076
19
2.1
19
85
0
53
55
0
0
45
0.99
24075--24128
12
4.6
12
86
4
74
33
46
9
11
1.71
31232--31266
13
2.7
13
100
0
70
42
5
8
42
1.59
31384--31416
2
16.5
2
100
0
66
0
48
0
51
1.00
45346--45732
96
4.0
96
97
0
729
25
17
21
35
1.95
47741--47798
29
2.0
29
86
6
82
32
3
12
51
1.56
51924--52062
74
1.9
74
84
3
190
34
15
9
41
1.79
56019--56064
19
2.3
20
78
14
51
73
6
10
8
1.23
59236--59302
25
2.6
26
77
17
77
46
0
0
53
1.00
59337--59400
26
2.4
26
94
2
110
34
15
17
32
1.91
59639--61090
99
14.5
99
86
3
1867
35
12
13
38
1.83
73280--73355
36
2.1
36
85
7
100
47
1
3
47
1.29
73495--73549
18
2.9
18
83
5
65
18
20
10
50
1.76
73519--73556
20
1.9
20
88
0
58
21
26
10
42
1.85
77062--77350
144
2.0
143
98
0
560
25
21
18
34
1.96
82380--82446
33
2.0
33
97
0
125
26
17
25
29
1.98
82550--82620
33
2.2
33
86
0
97
42
9
22
25
1.84

Tables:   1

The End!