genome.fa.s5309.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005309.1 Hibiscus syriacus cultivar Beakdansim tig00012015_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  98533

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3210--3252	23	1.9	22	90	4	68	13	11	4	69	1.33
13321--13423	37	2.8	37	81	0	125	41	14	13	30	1.84
14276--14305	4	7.2	4	92	7	51	23	3	0	73	0.98
14287--14364	25	3.0	25	75	9	75	15	11	0	73	1.11
17611--17641	15	2.1	15	93	0	53	12	16	12	58	1.64
18796--18862	20	3.2	20	81	12	73	80	4	14	0	0.86
18796--18854	8	7.2	8	76	16	59	81	3	15	0	0.82
18811--18875	27	2.4	27	85	12	80	81	4	12	1	0.91
19697--19731	18	1.9	18	94	0	61	31	11	5	51	1.61
20446--21389	106	9.0	106	88	2	1305	34	24	18	23	1.96
20439--21389	317	3.0	317	90	1	1414	33	24	18	23	1.96
22088--22192	37	2.8	37	85	2	140	40	15	9	34	1.79
22794--22836	2	21.5	2	100	0	86	48	0	0	51	1.00
23043--23079	2	18.5	2	100	0	74	48	0	0	51	1.00
23077--23113	4	9.2	4	93	0	65	24	2	0	72	0.97
23103--23143	15	2.6	16	81	14	50	14	7	0	78	0.96
23082--23140	12	4.8	12	80	12	57	18	5	0	76	0.97
33556--33690	70	2.0	68	88	2	198	51	9	8	31	1.64
53133--53177	14	2.9	16	87	12	67	48	11	22	17	1.78
55396--55496	51	2.0	51	98	0	193	34	12	21	30	1.91
58323--58396	14	5.0	14	87	11	103	50	12	21	16	1.77
58323--58396	31	2.5	30	93	6	125	50	12	21	16	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65679--65790	59	1.9	57	92	3	188	25	12	20	41	1.88
66105--66166	17	3.6	17	82	4	79	48	1	6	43	1.38
66106--66169	19	3.4	19	82	8	60	48	1	6	43	1.37
66122--66254	42	3.2	42	67	25	102	47	3	6	42	1.45
66146--66224	40	2.0	40	83	9	101	46	3	8	40	1.53
66209--66253	20	2.2	20	84	0	63	46	2	6	44	1.42
66276--66372	2	52.0	2	68	20	50	38	3	2	56	1.27
66225--66289	27	2.3	29	78	7	80	46	3	6	44	1.44
66225--66291	29	2.3	31	75	17	81	46	2	5	44	1.43
66276--66377	9	11.8	9	75	21	67	37	3	1	56	1.29
66292--66394	19	6.1	18	68	26	64	33	2	1	62	1.21
66320--66394	4	17.8	4	77	13	53	30	4	1	64	1.20
66871--66936	19	3.3	19	69	19	62	56	15	18	10	1.67
66856--66947	41	2.2	41	100	0	184	53	15	18	13	1.73
66853--66917	21	3.1	21	68	18	64	55	15	16	12	1.69
68446--68511	27	2.4	27	100	0	132	51	6	9	33	1.58
75060--75108	19	2.6	19	93	0	80	42	22	6	28	1.77
75766--75803	18	2.1	18	90	0	58	34	7	5	52	1.53
83732--83777	15	3.0	15	84	6	56	45	4	8	41	1.55
83887--83924	18	2.1	18	95	0	67	39	5	0	55	1.23
85264--85318	22	2.7	19	83	10	74	21	23	12	41	1.88
91580--91699	31	4.0	31	87	8	153	37	23	20	19	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92615--92659	21	2.1	21	87	0	63	15	24	28	31	1.96
95740--95850	31	3.6	31	90	2	179	37	22	20	18	1.94
96763--96803	20	2.0	20	85	0	55	17	26	29	26	1.97

Tables:   1

The End!