genome.fa.s531.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000531.1 Hibiscus syriacus cultivar Beakdansim tig00001026_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  115027

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1--48	24	2.0	24	92	8	80	37	4	4	54	1.39
11821--11856	18	2.0	18	94	0	63	27	13	5	52	1.63
11821--11863	18	2.5	17	88	7	61	32	11	4	51	1.59
16111--16140	14	2.1	14	93	0	51	23	0	0	76	0.78
20073--20252	65	2.8	65	80	9	199	28	17	23	30	1.97
20093--20291	65	3.1	63	79	13	165	28	17	23	31	1.96
28758--28910	74	2.1	73	85	6	202	28	19	22	28	1.98
35517--35551	12	2.9	12	95	0	61	88	0	11	0	0.51
37239--37281	22	2.0	21	82	13	52	34	0	11	53	1.37
37621--37707	11	8.4	11	73	13	60	32	3	1	63	1.19
38472--38515	7	5.9	7	80	15	52	22	0	0	77	0.77
38470--38515	16	2.9	16	96	3	85	21	0	0	78	0.76
40063--40099	13	2.7	14	87	8	58	29	13	2	54	1.53
44618--45268	93	7.4	90	95	2	934	28	14	21	35	1.92
47809--47882	22	3.4	22	78	0	67	36	10	14	37	1.82
48385--48706	166	1.9	164	88	5	488	34	14	12	38	1.84
48711--49083	73	5.1	73	98	0	692	32	20	12	34	1.90
49090--49311	113	2.0	113	92	0	372	37	16	19	26	1.93
49552--49628	39	2.0	39	92	0	127	22	42	18	16	1.89
51061--51137	12	6.7	11	82	10	84	31	2	1	64	1.15
51049--51137	23	3.9	23	83	15	105	30	3	1	65	1.16
51061--51144	11	7.4	11	79	11	53	29	3	2	64	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55763--55791	15	2.0	15	93	6	51	58	0	27	13	1.36
55938--55987	11	4.5	11	72	18	50	72	12	10	6	1.28
57042--57089	23	2.1	23	88	0	69	37	25	2	35	1.68
59253--59283	15	2.1	15	93	0	53	29	0	12	58	1.35
73278--73554	21	13.4	20	71	16	131	22	18	24	34	1.96
73319--73582	42	6.3	40	84	8	230	22	18	23	35	1.96
73338--73533	63	3.1	62	90	4	281	22	18	21	36	1.95
73278--73582	105	3.0	103	88	5	447	22	18	23	34	1.96
73338--73571	63	3.7	60	84	9	213	21	18	22	36	1.95
74351--74398	6	8.5	6	97	2	75	0	16	54	29	1.43
74759--75038	95	3.0	94	87	0	380	30	15	16	37	1.90
77120--77157	20	1.9	20	94	0	67	39	15	21	23	1.92
78841--78940	35	2.8	36	86	6	130	31	16	15	38	1.89
79459--80849	105	13.3	105	82	6	1413	21	19	26	32	1.97
79462--80849	204	6.7	203	84	7	1463	21	19	26	32	1.97
81498--81725	102	2.2	102	80	5	239	40	14	20	25	1.90
81631--81811	65	2.8	65	91	0	290	36	12	20	30	1.89
81596--81913	167	1.9	169	93	2	552	36	12	20	30	1.90
81696--82051	102	3.5	102	92	0	586	36	12	20	29	1.90
81761--82069	37	8.9	37	68	19	207	37	13	20	28	1.91
81817--81976	50	3.2	50	62	10	126	36	12	20	31	1.89
81965--82069	36	2.9	36	89	1	147	39	14	21	24	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82922--82972	22	2.3	22	96	0	93	25	11	27	35	1.91
83610--83699	8	11.7	7	73	15	54	1	13	7	77	1.03
84861--84899	8	5.0	8	84	6	53	58	12	17	10	1.61
84861--84899	15	2.5	15	87	4	51	58	12	17	10	1.61
85420--85457	18	2.1	18	100	0	76	34	13	31	21	1.91
87426--87525	35	2.8	36	86	6	130	31	16	15	38	1.89
89620--89718	18	5.5	18	90	0	153	27	32	22	18	1.97
105328--105357	12	2.5	12	94	0	51	66	6	0	26	1.16
107203--107434	104	2.2	109	81	4	258	23	19	14	42	1.88
108403--108444	19	2.2	19	87	8	59	40	21	23	14	1.90

Tables:   1

The End!