genome.fa.s5310.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005310.1 Hibiscus syriacus cultivar Beakdansim tig00012016_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78971

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3517--3547	15	2.1	14	94	5	53	38	0	38	22	1.54
5878--5924	23	2.0	24	91	4	78	38	8	4	48	1.53
11611--11840	116	1.9	120	86	6	326	37	15	15	30	1.89
17025--17056	2	16.0	2	100	0	64	0	50	0	50	1.00
17934--18291	179	2.0	179	96	1	655	32	22	3	41	1.72
18268--18319	9	6.1	9	76	13	56	32	1	1	63	1.16
18267--18316	17	3.0	17	91	2	75	34	2	4	60	1.27
18276--18321	16	2.9	16	87	6	58	30	2	2	65	1.16
23989--24109	55	2.2	55	90	0	188	43	13	22	20	1.86
24462--24498	6	6.2	6	87	12	58	18	16	16	48	1.81
24462--24498	13	3.1	12	88	11	58	18	16	16	48	1.81
27746--28007	125	2.1	125	86	2	357	32	17	25	24	1.97
29660--29766	55	2.0	54	88	1	160	34	18	22	24	1.96
29653--29772	54	2.2	53	85	4	168	34	17	24	24	1.96
29761--30404	55	11.8	55	87	1	893	31	14	24	29	1.95
30368--30595	54	4.2	54	89	1	341	35	17	23	22	1.95
39397--39445	15	3.3	15	91	0	62	8	16	65	10	1.46
43650--43712	29	2.1	29	82	8	74	30	14	28	26	1.95
44292--44339	23	2.1	23	88	0	69	35	12	18	33	1.89
44815--44887	23	3.2	23	88	0	101	41	17	5	35	1.73
45251--45323	23	3.2	23	90	0	110	39	20	4	35	1.72
49334--49426	3	31.0	3	77	0	87	22	33	7	36	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49334--49449	12	9.7	12	84	0	115	21	31	7	38	1.82
49338--49426	18	4.9	18	81	0	106	21	33	7	37	1.82
49338--49449	6	18.7	6	79	0	89	20	32	8	39	1.82
50945--51709	200	3.8	200	95	0	1334	30	18	15	35	1.92
51810--51870	19	3.3	18	88	2	59	52	11	1	34	1.47
51822--51870	19	2.6	19	96	0	89	55	10	2	32	1.45
53665--53730	33	2.0	33	87	0	96	22	46	0	30	1.52
53764--53828	21	3.1	21	93	0	103	16	30	10	41	1.83
56027--56069	20	2.3	18	85	14	61	20	16	11	51	1.75
56032--56078	20	2.4	19	82	10	67	19	17	10	53	1.72
56214--56260	20	2.3	20	82	10	60	17	14	12	55	1.70
55999--56472	182	2.6	180	87	2	660	26	16	13	42	1.86
62685--62823	73	1.9	73	85	5	192	53	1	6	38	1.35
65218--65251	11	3.0	11	91	8	59	26	0	0	73	0.83
65218--65251	12	2.9	12	95	4	61	26	0	0	73	0.83
65406--65450	23	2.0	23	90	0	72	55	17	4	22	1.60
65534--65600	20	3.3	20	97	0	125	46	7	23	22	1.77
67474--67553	32	2.5	32	95	0	133	32	22	10	35	1.87
69019--69086	24	2.8	24	84	4	91	54	14	14	16	1.72
69007--69050	14	3.1	14	100	0	88	54	15	15	13	1.71
70377--70407	5	6.2	5	92	0	53	3	19	54	22	1.58
70395--70987	268	2.3	259	88	4	818	26	12	20	39	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71275--71395	44	2.8	44	92	0	188	39	18	10	31	1.85
75040--75101	26	2.3	27	81	10	65	48	1	11	38	1.49
75243--75278	16	2.2	17	90	5	56	50	2	0	47	1.15
75406--75439	13	2.6	13	100	0	68	32	11	8	47	1.71

Tables:   1

The End!