genome.fa.s5311.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005311.1 Hibiscus syriacus cultivar Beakdansim tig00012019_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60909

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3980--4150	34	5.0	34	91	0	279	38	14	24	22	1.92
8028--8060	17	1.9	17	100	0	66	51	6	12	30	1.63
10336--10366	16	1.9	16	100	0	62	19	9	19	51	1.74
12732--12771	20	2.0	20	90	4	64	42	10	0	47	1.37
14071--14176	52	2.0	53	94	1	187	35	15	19	29	1.92
17885--17924	21	1.9	21	90	10	64	52	0	20	27	1.46
18327--18400	20	3.7	20	80	3	94	41	17	21	18	1.90
18327--18419	21	4.5	21	78	4	91	40	17	23	18	1.90
18327--18419	41	2.3	41	96	0	168	40	17	23	18	1.90
18410--18502	20	4.6	20	78	2	69	35	24	18	21	1.95
18405--18482	41	1.9	41	83	0	102	41	21	16	20	1.91
20730--20934	20	11.1	19	78	13	178	42	21	22	12	1.87
20779--20873	33	2.8	33	85	1	127	38	26	22	12	1.90
20845--20934	19	4.7	19	93	2	153	46	22	20	11	1.81
20845--20934	39	2.3	38	94	1	153	46	22	20	11	1.81
20930--21015	19	4.5	19	89	2	127	9	15	24	51	1.72
20930--21015	39	2.2	38	89	2	127	9	15	24	51	1.72
21535--21587	20	2.7	20	93	0	88	26	20	28	24	1.99
21596--21649	20	2.7	20	94	0	90	25	16	24	33	1.96
21721--21761	21	2.0	21	85	0	55	34	31	17	17	1.93
24391--24499	24	4.5	24	73	4	94	20	11	16	52	1.73
29474--29581	52	2.1	53	91	1	173	37	14	17	29	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29657--29694	14	2.7	14	95	0	67	18	18	13	50	1.78
32374--32447	36	2.0	37	94	2	132	13	22	14	48	1.79
34698--34810	60	1.9	59	83	5	147	29	18	15	37	1.91
34710--34837	60	2.1	59	80	7	141	31	17	14	36	1.90
35639--35697	31	1.9	30	83	13	75	22	5	10	62	1.46
36896--37038	71	2.0	71	95	0	259	42	9	9	38	1.70
48003--48066	29	2.2	29	83	5	76	32	21	4	40	1.74
48386--48497	41	2.7	41	98	0	215	23	13	30	33	1.93

Tables:   1

The End!