Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005312.1 Hibiscus syriacus cultivar Beakdansim tig00012020_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  99293

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1579--1627
17
2.7
18
78
6
55
32
20
18
28
1.96
1961--2265
54
5.6
54
82
0
358
31
17
17
34
1.93
2291--2434
54
2.7
54
83
9
190
30
18
15
35
1.92
2314--2541
124
1.8
124
82
5
291
31
18
16
33
1.93
2571--2719
44
3.4
45
83
6
193
49
5
19
25
1.69
2646--2717
21
3.3
21
75
11
81
54
4
16
25
1.60
2596--2734
44
3.1
45
81
6
162
51
4
16
27
1.63
7484--7523
20
2.0
21
90
5
64
40
15
12
32
1.84
14714--14777
17
3.2
20
78
19
71
18
42
23
15
1.89
18168--18220
20
2.7
20
88
2
72
30
15
15
39
1.87
29857--29886
2
15.5
2
93
6
53
50
0
0
50
1.00
39384--39449
20
3.3
20
87
6
91
31
24
13
30
1.94
58768--58841
20
3.7
20
75
7
78
31
32
14
21
1.94
58747--58842
40
2.4
41
85
1
122
33
30
13
22
1.93
59977--60525
58
9.5
58
87
1
746
38
17
9
34
1.82
60869--61087
95
2.3
95
81
3
246
26
23
15
34
1.94
62437--62502
2
33.0
2
100
0
132
0
0
50
50
1.00
63655--63726
24
3.2
24
64
22
64
31
19
9
38
1.84
63604--63755
44
3.4
44
90
1
241
32
23
6
38
1.80
72619--72658
20
2.0
20
85
9
55
37
27
22
12
1.90
77470--77577
40
2.6
42
85
4
139
31
15
19
33
1.93
78057--78110
21
2.6
21
81
0
63
7
33
3
55
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
81207--81304
47
2.0
49
84
7
130
35
13
17
33
1.88
82518--82551
16
2.1
16
88
0
50
67
2
2
26
1.19
83456--83512
27
2.1
27
84
9
73
57
7
3
31
1.42
83971--84025
9
6.3
9
76
14
53
32
0
3
63
1.12
83978--84030
27
2.0
27
85
14
74
33
0
5
60
1.20
95288--95313
12
2.2
12
100
0
52
42
7
34
15
1.75

Tables:   1

The End!