Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005314.1 Hibiscus syriacus cultivar Beakdansim tig00012031_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  113425

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8699--8783
36
2.4
36
100
0
170
40
17
12
29
1.87
12810--12843
16
2.1
16
94
0
59
32
26
8
32
1.87
18863--18907
20
2.3
20
88
3
65
48
37
0
13
1.42
21286--21429
7
20.4
7
75
7
112
19
0
34
45
1.51
21633--21672
21
2.0
21
85
5
55
45
2
0
52
1.14
22984--23044
31
2.0
31
86
0
86
22
11
19
45
1.82
25709--25864
42
3.8
41
78
10
129
26
21
19
32
1.97
26848--26900
25
2.1
25
100
0
106
43
3
7
45
1.50
30024--30125
42
2.5
42
79
7
111
29
24
11
34
1.91
30069--30157
41
2.2
40
86
6
117
26
23
10
39
1.87
30069--30157
20
4.4
20
73
8
72
26
23
10
39
1.87
30150--30217
20
3.4
20
75
0
73
27
22
17
32
1.96
30103--30239
60
2.3
61
82
5
154
28
21
13
35
1.92
37513--37610
27
3.4
27
71
15
79
23
32
15
28
1.95
37690--37741
27
1.9
27
88
0
77
32
15
25
26
1.95
37781--37834
27
2.0
27
92
0
90
31
16
27
24
1.96
38215--38291
13
5.8
12
74
19
57
10
2
6
80
0.98
38220--38285
9
7.4
9
83
13
84
10
1
7
80
0.97
38257--38304
12
3.9
12
82
12
53
4
10
4
81
0.97
39697--39772
38
2.0
38
100
0
152
34
7
5
52
1.53
39920--39969
21
2.4
21
83
9
66
26
0
2
72
0.96
43983--44024
12
3.5
12
90
0
66
40
4
0
54
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48766--48798
2
16.0
2
93
6
57
48
3
0
48
1.17
48958--48998
14
3.0
14
85
7
57
36
4
0
58
1.20
60330--60377
20
2.4
20
89
0
69
45
14
12
27
1.81
61666--61712
18
2.6
18
86
0
58
34
29
0
36
1.58
61682--61726
18
2.5
18
89
7
65
26
26
2
44
1.66
65375--65455
6
13.2
6
79
10
83
37
3
13
45
1.61
65413--65443
14
2.2
14
94
0
53
38
0
9
51
1.35
80443--80648
109
1.9
108
91
1
340
29
9
14
47
1.75
91444--91502
30
2.0
29
96
3
109
33
28
10
27
1.89
92358--92394
9
4.1
9
86
13
58
35
0
10
54
1.36
93362--93512
67
2.2
69
91
2
243
35
7
18
39
1.79
97020--97061
23
1.9
21
85
9
57
26
2
2
69
1.13
107686--107744
26
2.3
26
90
0
91
13
27
13
45
1.81
108809--108859
11
4.6
11
97
0
93
47
0
9
43
1.36
111728--112152
133
3.2
132
84
1
562
23
18
31
26
1.97
112205--112396
64
3.0
64
80
6
226
38
15
20
25
1.92
112192--112403
65
3.3
66
78
8
220
37
15
19
27
1.92
112543--112689
65
2.3
66
92
4
246
38
12
15
34
1.85
112926--113117
91
2.1
93
95
3
345
37
10
18
32
1.86
113201--113393
34
5.5
35
75
12
130
37
11
19
31
1.88

Tables:   1

The End!