Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: VEPZ01005316.1 Hibiscus syriacus cultivar Beakdansim tig00012036_pilon, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 155458
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33


File 2 of 2

Found at i:150755 original size:18 final size:18

Alignment explanation


    Indices: 150734--150768  Score: 70
    Period size: 18  Copynumber: 1.9  Consensus size: 18

     150724 ACAACATTGT

                              
     150734 CGAACCAGTTAAACCAGC
          1 CGAACCAGTTAAACCAGC

                             
     150752 CGAACCAGTTAAACCAG
          1 CGAACCAGTTAAACCAG

     150769 TCTACAAAAT


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   17  1.00

ACGTcount: A:0.40, C:0.31, G:0.17, T:0.11


Consensus pattern (18 bp):   
CGAACCAGTTAAACCAGC

Found at i:151828 original size:16 final size:16

Alignment explanation


    Indices: 151809--151851  Score: 52
    Period size: 16  Copynumber: 2.8  Consensus size: 16

     151799 TAGGACTTTA

                    *       
     151809 TTTATTTTCATTTTCC
          1 TTTATTTTAATTTTCC

                  *         
     151825 TTTATTCTAATTTTCC
          1 TTTATTTTAATTTTCC

                   *    
     151841 -TTATTTGAATT
          1 TTTATTTTAATT

     151852 ATACTCATTT


Statistics
Matches: 23,  Mismatches: 4, Indels: 1
        0.82            0.14        0.04

Matches are distributed among these distances:
  15    9  0.39
  16   14  0.61

ACGTcount: A:0.19, C:0.14, G:0.02, T:0.65


Consensus pattern (16 bp):   
TTTATTTTAATTTTCC

Done.