genome.fa.s5318.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01005318.1 Hibiscus syriacus cultivar Beakdansim tig00012038_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  125683

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3277--3310	2	17.0	2	100	0	68	50	0	0	50	1.00
3491--3602	59	1.9	58	83	8	147	30	16	17	35	1.92
5576--5619	2	22.5	2	95	4	81	47	0	0	52	1.00
6201--6564	46	7.9	47	85	4	472	22	20	11	45	1.84
6201--6564	91	3.9	93	86	5	445	22	20	11	45	1.84
6400--6486	27	3.5	27	70	20	98	20	22	11	44	1.84
6436--6550	20	5.2	20	64	27	54	22	24	13	40	1.89
8544--8643	34	2.9	35	97	2	186	40	12	16	32	1.84
10279--10340	24	2.6	24	92	0	97	22	20	22	33	1.97
15606--15656	21	2.4	21	93	0	93	23	31	21	23	1.98
17372--17745	47	8.0	47	87	4	436	21	19	12	46	1.83
17372--17745	94	4.0	94	87	0	509	21	19	12	46	1.83
17361--17740	141	2.7	140	90	2	555	21	19	12	46	1.83
18414--18452	20	2.0	19	90	5	60	30	25	10	33	1.89
19918--19967	24	2.0	24	81	11	57	30	0	4	66	1.10
24390--24431	21	2.0	21	100	0	84	28	14	9	47	1.75
24420--24496	33	2.4	32	84	4	109	33	9	12	44	1.75
24907--24948	17	2.4	18	96	4	77	30	9	9	50	1.67
25425--25477	2	26.5	2	100	0	106	49	0	0	50	1.00
26339--26380	16	2.6	16	78	10	50	28	2	0	69	1.01
34162--34351	65	2.9	65	87	1	256	31	20	15	33	1.94
35782--35817	12	3.0	12	91	0	54	55	13	27	2	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40134--40204	23	3.2	23	64	22	60	28	19	19	32	1.97
40110--40209	44	2.3	44	91	0	155	30	21	19	30	1.97
40631--40667	18	2.1	18	90	5	58	27	0	8	64	1.21
42473--42507	13	2.6	14	86	13	56	42	8	5	42	1.59
42505--42533	13	2.2	13	100	0	58	65	6	6	20	1.40
42832--43019	65	2.9	65	81	5	229	32	22	13	31	1.93
45038--45106	23	3.0	23	77	10	79	15	2	5	75	1.12
51763--51821	11	5.5	11	71	15	52	74	1	22	1	1.00
51763--51820	14	4.1	14	72	16	57	74	1	22	1	1.01
58540--58579	21	2.0	20	86	13	57	17	10	7	65	1.46
61253--61350	23	4.5	21	71	9	70	36	25	18	19	1.94
61271--61336	23	2.9	23	81	0	78	34	25	21	18	1.96
65727--65788	28	2.2	28	82	5	81	37	33	6	22	1.80
66520--66548	13	2.1	14	93	6	51	37	0	0	62	0.96
66520--66549	10	2.9	10	95	5	51	40	0	0	60	0.97
74803--74875	2	36.5	2	100	0	146	49	0	0	50	1.00
74875--74985	2	55.5	2	100	0	222	0	0	49	50	1.00
80356--80605	57	4.5	54	74	15	217	28	11	18	41	1.85
85193--85265	32	2.3	32	82	0	101	16	31	28	23	1.96
85607--85636	2	15.0	2	100	0	60	50	0	0	50	1.00
87577--87603	14	1.9	14	100	0	54	44	0	3	51	1.19
91000--91054	16	3.3	16	82	12	58	32	9	0	58	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91001--91048	23	2.0	24	84	4	62	35	6	0	58	1.23
92527--92567	16	2.6	16	88	3	57	34	21	7	36	1.82
95130--95165	3	12.3	3	94	5	65	69	0	0	30	0.89
95748--95813	31	2.2	31	88	2	98	59	9	7	24	1.54
98686--98832	60	2.4	61	78	7	149	32	19	3	44	1.67
100496--100563	20	3.4	19	75	4	64	19	22	26	32	1.97
104865--104905	20	2.0	20	86	9	57	9	21	31	36	1.86
107962--108021	31	1.9	31	86	10	86	20	15	21	43	1.88
107894--108052	72	2.3	66	82	7	183	23	16	21	38	1.92
112452--112513	30	2.1	30	100	0	124	38	32	9	19	1.84
114862--114964	54	1.9	54	84	4	136	32	19	7	40	1.80
119134--119212	20	4.0	20	89	0	122	46	22	12	17	1.82
119335--119385	22	2.3	22	86	0	75	19	41	13	25	1.88
119744--119815	20	3.7	20	90	1	101	19	19	18	43	1.89
119761--119813	20	2.7	20	100	0	106	15	20	16	47	1.83
121960--122057	21	4.7	21	80	0	106	24	34	19	21	1.96
121966--122057	42	2.2	42	86	0	121	25	34	19	20	1.96
123764--123821	20	2.9	20	84	0	80	18	18	18	43	1.89

Tables:   1

The End!